RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 TYRO3Q06418 890 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 AAK1Q2M2I8 961 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 CBWD6Q4V339 395 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 ZNF667Q5HYK9 610 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 CBWD3Q5JTY5 395 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 CBWD5Q5RIA9 395 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 SYCE2Q6PIF2 218 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 C11orf57Q6ZUT1 292 aaPredicted RBP21.77■■□□□ 1.08
PTCD3-220ENST00000627371 SMRP1Q8NCR6 262 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 KREMEN2Q8NCW0 462 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 FBXL13Q8NEE6 735 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 OR10T2Q8NGX3 314 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 ZNF461Q8TAF7 563 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 MMS19Q96T76 1030 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 IMPG2Q9BZV3 1241 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 THAP9Q9H5L6 903 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 SFXN1Q9H9B4 322 aa21.77■■□□□ 1.08
PTCD3-220ENST00000627371 NXF1Q9UBU9 619 aaKnown RBP21.77■■□□□ 1.08
PTCD3-220ENST00000627371 GABRDO14764 452 aa21.76■■□□□ 1.07
PTCD3-220ENST00000627371 CLSTN1O94985 981 aa21.76■■□□□ 1.07
PTCD3-220ENST00000627371 LETM1O95202 739 aaPredicted RBP21.76■■□□□ 1.07
PTCD3-220ENST00000627371 SPATA31D3P0C874 917 aa21.76■■□□□ 1.07
PTCD3-220ENST00000627371 CPB1P15086 417 aa21.76■■□□□ 1.07
PTCD3-220ENST00000627371 LHX1P48742 406 aa21.76■■□□□ 1.07
PTCD3-220ENST00000627371 CLUL1Q15846 466 aa21.76■■□□□ 1.07
PTCD3-220ENST00000627371 TPGS2Q68CL5 300 aa21.76■■□□□ 1.07
PTCD3-220ENST00000627371 SPATA31D4Q6ZUB0 917 aa21.76■■□□□ 1.07
PTCD3-220ENST00000627371 OSTM1Q86WC4 334 aa21.76■■□□□ 1.07
PTCD3-220ENST00000627371 IRF2BP1Q8IU81 584 aa21.76■■□□□ 1.07
PTCD3-220ENST00000627371 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.76■■□□□ 1.07
PTCD3-220ENST00000627371 ENOX1Q8TC92 643 aaKnown RBP21.76■■□□□ 1.07
PTCD3-220ENST00000627371 KBTBD7Q8WVZ9 684 aa21.76■■□□□ 1.07
PTCD3-220ENST00000627371 DDX43Q9NXZ2 648 aaKnown RBP21.76■■□□□ 1.07
PTCD3-220ENST00000627371 POLIQ9UNA4 740 aa21.76■■□□□ 1.07
PTCD3-220ENST00000627371 COQ4Q9Y3A0 265 aa21.76■■□□□ 1.07
PTCD3-220ENST00000627371 SPDYE4A6NLX3 237 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 PMM2O15305 246 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 N4BP1O75113 896 aaKnown RBP21.75■■□□□ 1.07
PTCD3-220ENST00000627371 TACC1O75410 805 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 FAM163BP0C2L3 166 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 OR4Q2P0C623 313 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 P4HA1P13674 534 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 ATF2P15336 505 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 WARSP23381 471 aaKnown RBP21.75■■□□□ 1.07
PTCD3-220ENST00000627371 FMO5P49326 533 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 NOP14P78316 857 aaKnown RBP21.75■■□□□ 1.07
PTCD3-220ENST00000627371 MRPS5P82675 430 aaKnown RBP21.75■■□□□ 1.07
PTCD3-220ENST00000627371 MYL7Q01449 175 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 SMAD4Q13485 552 aaKnown RBP21.75■■□□□ 1.07
PTCD3-220ENST00000627371 LIN9Q5TKA1 542 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 FAM114A1Q8IWE2 563 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.75■■□□□ 1.07
PTCD3-220ENST00000627371 TMEM209Q96SK2 561 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 PI4K2AQ9BTU6 479 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 ZCWPW1Q9H0M4 648 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 DNAJC25Q9H1X3 360 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 S1PR5Q9H228 398 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 RAB20Q9NX57 234 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 AFF4Q9UHB7 1163 aaKnown RBP21.75■■□□□ 1.07
PTCD3-220ENST00000627371 UTP18Q9Y5J1 556 aaKnown RBP eCLIP21.75■■□□□ 1.07
PTCD3-220ENST00000627371 C5orf42Q9H799 3197 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 DENND4AQ7Z401 1863 aa21.75■■□□□ 1.07
PTCD3-220ENST00000627371 PTPRDP23468 1912 aa21.74■■□□□ 1.07
PTCD3-220ENST00000627371 TCF20Q9UGU0 1960 aaKnown RBP21.74■■□□□ 1.07
PTCD3-220ENST00000627371 GPR17Q13304 367 aa21.74■■□□□ 1.07
PTCD3-220ENST00000627371 NFKBIBQ15653 356 aa21.74■■□□□ 1.07
PTCD3-220ENST00000627371 PUS10Q3MIT2 529 aaKnown RBP21.74■■□□□ 1.07
PTCD3-220ENST00000627371 SPOPLQ6IQ16 392 aa21.74■■□□□ 1.07
PTCD3-220ENST00000627371 CCDC150Q8NCX0 1101 aa21.74■■□□□ 1.07
PTCD3-220ENST00000627371 CMASQ8NFW8 434 aaPredicted RBP21.74■■□□□ 1.07
PTCD3-220ENST00000627371 SEMA4DQ92854 862 aa21.74■■□□□ 1.07
PTCD3-220ENST00000627371 ELMO3Q96BJ8 720 aa21.74■■□□□ 1.07
PTCD3-220ENST00000627371 ACBD6Q9BR61 282 aa21.74■■□□□ 1.07
PTCD3-220ENST00000627371 MRPL45Q9BRJ2 306 aaKnown RBP21.74■■□□□ 1.07
PTCD3-220ENST00000627371 SMYD3Q9H7B4 428 aa21.74■■□□□ 1.07
PTCD3-220ENST00000627371 ZDHHC7Q9NXF8 308 aa21.74■■□□□ 1.07
PTCD3-220ENST00000627371 MAFFQ9ULX9 164 aa21.74■■□□□ 1.07
PTCD3-220ENST00000627371 P4HA2O15460 535 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 MBTPS2O43462 519 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 ZMYND10O75800 440 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 PAPLNO95428 1278 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 C8AP07357 584 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 PCSK1P29120 753 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 TSPY1Q01534 308 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 ITIH3Q06033 890 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 KCNH2Q12809 1159 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 UVSSAQ2YD98 709 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 RARS2Q5T160 578 aaKnown RBP21.73■■□□□ 1.07
PTCD3-220ENST00000627371 RNF19BQ6ZMZ0 732 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 CCDC149Q6ZUS6 474 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 RTL10Q7L3V2 364 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 C12orf76Q8N812 135 aaPredicted RBP21.73■■□□□ 1.07
PTCD3-220ENST00000627371 FUCA2Q9BTY2 467 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 APOL5Q9BWW9 433 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 ADAM7Q9H2U9 754 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 APOBEC3GQ9HC16 384 aaKnown RBP21.73■■□□□ 1.07
PTCD3-220ENST00000627371 NFE2L3Q9Y4A8 694 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 DOCK6Q96HP0 2047 aa21.73■■□□□ 1.07
PTCD3-220ENST00000627371 SYCE3A1L190 88 aa21.72■■□□□ 1.07
PTCD3-220ENST00000627371 LRRN2O75325 713 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms