RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ZC3H10Q96K80 434 aaKnown RBP18.38■□□□□ 0.53
VPS29-204ENST00000548259 CXCL8P10145 99 aa18.37■□□□□ 0.53
VPS29-204ENST00000548259 AVPR1AP37288 418 aa18.37■□□□□ 0.53
VPS29-204ENST00000548259 AARSP49588 968 aaKnown RBP eCLIP18.37■□□□□ 0.53
VPS29-204ENST00000548259 TNK2Q07912 1038 aa18.37■□□□□ 0.53
VPS29-204ENST00000548259 PLA2G2CQ5R387 149 aa18.37■□□□□ 0.53
VPS29-204ENST00000548259 DAB2IPQ5VWQ8 1189 aa18.37■□□□□ 0.53
VPS29-204ENST00000548259 RINT1Q6NUQ1 792 aa18.37■□□□□ 0.53
VPS29-204ENST00000548259 CC2D1AQ6P1N0 951 aaPredicted RBP18.37■□□□□ 0.53
VPS29-204ENST00000548259 DAW1Q8N136 415 aa18.37■□□□□ 0.53
VPS29-204ENST00000548259 ZBTB45Q96K62 511 aaPredicted RBP18.37■□□□□ 0.53
VPS29-204ENST00000548259 SEPT5Q99719 369 aaPredicted RBP18.37■□□□□ 0.53
VPS29-204ENST00000548259 MKNK1Q9BUB5 465 aa18.37■□□□□ 0.53
VPS29-204ENST00000548259 GKN1Q9NS71 199 aa18.37■□□□□ 0.53
VPS29-204ENST00000548259 C2orf42Q9NWW7 574 aa18.37■□□□□ 0.53
VPS29-204ENST00000548259 VNN2O95498 520 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 PLS3P13797 630 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 DRD1P21728 446 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 GUCY2CP25092 1073 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 PXNP49023 591 aaPredicted RBP18.36■□□□□ 0.53
VPS29-204ENST00000548259 SMARCB1Q12824 385 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 BFSP1Q12934 665 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 RUNX3Q13761 415 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 MGAT5BQ3V5L5 792 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 FBXO43Q4G163 708 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 SEZ6Q53EL9 994 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 TMEM196Q5HYL7 178 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 WDR44Q5JSH3 913 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 PSAPL1Q6NUJ1 521 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 IGSF22Q8N9C0 903 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 CCDC26Q8TAB7 109 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 LRRC3BQ96PB8 259 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 CRISPLD1Q9H336 500 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 SH2B1Q9NRF2 756 aaPredicted RBP18.36■□□□□ 0.53
VPS29-204ENST00000548259 DSEQ9UL01 958 aa18.36■□□□□ 0.53
VPS29-204ENST00000548259 TTC26A0AVF1 554 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 E9PMD0 336 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 LAD1O00515 517 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 TRDMT1O14717 391 aaKnown RBP18.35■□□□□ 0.53
VPS29-204ENST00000548259 LARGE1O95461 756 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 PRAMEF12O95522 483 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 DDX6P26196 483 aaKnown RBP eCLIP18.35■□□□□ 0.53
VPS29-204ENST00000548259 CACNB1Q02641 598 aaPredicted RBP18.35■□□□□ 0.53
VPS29-204ENST00000548259 SPAG1Q07617 926 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 C1orf186Q6ZWK4 172 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 C11orf74Q86VG3 221 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 METTL23Q86XA0 190 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 THEM5Q8N1Q8 247 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 KCTD17Q8N5Z5 321 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 C2orf15Q8WU43 125 aaKnown RBP18.35■□□□□ 0.53
VPS29-204ENST00000548259 EDEM2Q9BV94 578 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 RUSC1Q9BVN2 902 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 RPF1Q9H9Y2 349 aaKnown RBP18.35■□□□□ 0.53
VPS29-204ENST00000548259 KIF9Q9HAQ2 790 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 RXFP3Q9NSD7 469 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 LARSQ9P2J5 1176 aaKnown RBP18.35■□□□□ 0.53
VPS29-204ENST00000548259 FAM208BQ5VWN6 2430 aa18.35■□□□□ 0.53
VPS29-204ENST00000548259 RALGAPA1Q6GYQ0 2036 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 SFI1A8K8P3 1242 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 MEFVO15553 781 aaPredicted RBP18.34■□□□□ 0.53
VPS29-204ENST00000548259 EIF5BO60841 1220 aaKnown RBP18.34■□□□□ 0.53
VPS29-204ENST00000548259 SCP2P22307 547 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 NOVA1P51513 510 aaKnown RBP18.34■□□□□ 0.53
VPS29-204ENST00000548259 CYP4F8P98187 520 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 MAPK7Q13164 816 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 ZBTB6Q15916 424 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 PLK5Q496M5 336 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 UNQ6494/PRO21346Q6UXR6 183 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 CD302Q8IX05 232 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 CMTM8Q8IZV2 173 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 TMEM161BQ8NDZ6 487 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 ACDQ96AP0 544 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 SENP8Q96LD8 212 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 KCND2Q9NZV8 630 aa18.34■□□□□ 0.53
VPS29-204ENST00000548259 SOBPA7XYQ1 873 aa18.33■□□□□ 0.52
VPS29-204ENST00000548259 RNF40O75150 1001 aa18.33■□□□□ 0.52
VPS29-204ENST00000548259 SOAT2O75908 522 aa18.33■□□□□ 0.52
VPS29-204ENST00000548259 APBB3O95704 486 aa18.33■□□□□ 0.52
VPS29-204ENST00000548259 CAVIN2O95810 425 aa18.33■□□□□ 0.52
VPS29-204ENST00000548259 MAPTP10636 758 aaKnown RBP18.33■□□□□ 0.52
VPS29-204ENST00000548259 LIG4P49917 911 aa18.33■□□□□ 0.52
VPS29-204ENST00000548259 NEK4P51957 841 aa18.33■□□□□ 0.52
VPS29-204ENST00000548259 LILRA4P59901 499 aa18.33■□□□□ 0.52
VPS29-204ENST00000548259 CREB5Q02930 508 aa18.33■□□□□ 0.52
VPS29-204ENST00000548259 PDGFRLQ15198 375 aa18.33■□□□□ 0.52
VPS29-204ENST00000548259 SLC39A12Q504Y0 691 aa18.33■□□□□ 0.52
VPS29-204ENST00000548259 DTHD1Q6ZMT9 781 aa18.33■□□□□ 0.52
VPS29-204ENST00000548259 FAM83CQ9BQN1 747 aa18.33■□□□□ 0.52
VPS29-204ENST00000548259 ATRXP46100 2492 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 TMEM8BA6NDV4 472 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 LACTBL1A8MY62 500 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 HNRNPDLO14979 420 aaKnown RBP18.32■□□□□ 0.52
VPS29-204ENST00000548259 ZRSR1Q15695 479 aaKnown RBP18.32■□□□□ 0.52
VPS29-204ENST00000548259 SPATA1Q5VX52 437 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 FSTL4Q6MZW2 842 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 PKN3Q6P5Z2 889 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 CPA6Q8N4T0 437 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 TTC9BQ8N6N2 239 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 C4orf32Q8N8J7 132 aa18.32■□□□□ 0.52
VPS29-204ENST00000548259 FAM184AQ8NB25 1140 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 194.4 ms