RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 TAS2R40P59535 323 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 TNNC1P63316 161 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 RBP5P82980 135 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 PTPN11Q06124 597 aaPredicted RBP6.62□□□□□ -1.35
CLK1-210ENST00000473565 MAMLD1Q13495 774 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 BRD3Q15059 726 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 PTPN20Q4JDL3 420 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 DDX42Q86XP3 938 aaKnown RBP eCLIP6.62□□□□□ -1.35
CLK1-210ENST00000473565 RNF169Q8NCN4 708 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 ACTRT1Q8TDG2 376 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 CD101Q93033 1021 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 ACSF2Q96CM8 615 aaPredicted RBP6.62□□□□□ -1.35
CLK1-210ENST00000473565 HEXIM2Q96MH2 286 aaKnown RBP6.62□□□□□ -1.35
CLK1-210ENST00000473565 SELENOOQ9BVL4 669 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 FUT8Q9BYC5 575 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 FAM49BQ9NUQ9 324 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 UVRAGQ9P2Y5 699 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 SRRDQ9UH36 339 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 AMACRQ9UHK6 382 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 ST3GAL5Q9UNP4 418 aa6.62□□□□□ -1.35
CLK1-210ENST00000473565 TLR3O15455 904 aaKnown RBP6.61□□□□□ -1.35
CLK1-210ENST00000473565 RPS6KA5O75582 802 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 HEXIM1O94992 359 aaKnown RBP6.61□□□□□ -1.35
CLK1-210ENST00000473565 GHRP10912 638 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 MMP8P22894 467 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 TNNT3P45378 269 aaPredicted RBP6.61□□□□□ -1.35
CLK1-210ENST00000473565 VEGFBP49765 207 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 OGDHQ02218 1023 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 GUCY2DQ02846 1103 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 ACOT1Q86TX2 421 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 PHF13Q86YI8 300 aaPredicted RBP6.61□□□□□ -1.35
CLK1-210ENST00000473565 IFT81Q8WYA0 676 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 MCEEQ96PE7 176 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 HERPUD2Q9BSE4 406 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 UPF3AQ9H1J1 476 aaKnown RBP6.61□□□□□ -1.35
CLK1-210ENST00000473565 DPEP3Q9H4B8 488 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 EPB41L5Q9HCM4 733 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 TMEM59LQ9UK28 342 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 ITGA11Q9UKX5 1188 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 RALGAPA2Q2PPJ7 1873 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 CASP8AP2Q9UKL3 1982 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 THSD7BQ9C0I4 1608 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 M0QYV0 167 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 MYO1FO00160 1098 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 TULP2O00295 520 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 RRP9O43818 475 aaKnown RBP6.61□□□□□ -1.35
CLK1-210ENST00000473565 MICAL2O94851 1124 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 CD52P31358 61 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 PLA2G4AP47712 749 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 CARSP49589 748 aaKnown RBP6.61□□□□□ -1.35
CLK1-210ENST00000473565 ZNF252P-AS1Q0IIN9 211 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 TCEAL1Q15170 157 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 ZBTB6Q15916 424 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 PTGISQ16647 500 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 ATP13A4Q4VNC1 1196 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 LIN9Q5TKA1 542 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 C9orf57Q5W0N0 161 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 TAF2Q6P1X5 1199 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 WDR93Q6P2C0 686 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 ALKAL1Q6UXT8 129 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 TRIM72Q6ZMU5 477 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 MTERF4Q7Z6M4 381 aaKnown RBP6.61□□□□□ -1.35
CLK1-210ENST00000473565 RASGEF1CQ8N431 466 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 EMC1Q8N766 993 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 TMEM35BQ8NCS4 154 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 RAET1EQ8TD07 263 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 TMEM176AQ96HP8 235 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 CPXM1Q96SM3 734 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 FAM118BQ9BPY3 351 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 STIM2Q9P246 746 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 PDCD11Q14690 1871 aaKnown RBP6.61□□□□□ -1.35
CLK1-210ENST00000473565 PTGESO14684 152 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 TTI1O43156 1089 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 SART1O43290 800 aaKnown RBP6.61□□□□□ -1.35
CLK1-210ENST00000473565 PDGFRBP09619 1106 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 MLH1P40692 756 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 RGS7P49802 495 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 CDC42EP1Q00587 391 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 ITIH3Q06033 890 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 KYAT1Q16773 422 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 CCSAPQ6IQ19 270 aaPredicted RBP6.61□□□□□ -1.35
CLK1-210ENST00000473565 CCNI2Q6ZMN8 369 aaPredicted RBP6.61□□□□□ -1.35
CLK1-210ENST00000473565 ANKS1BQ7Z6G8 1248 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 SERINC5Q86VE9 423 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 ERICH1Q86X53 443 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 UBL4BQ8N7F7 174 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 KLHDC9Q8NEP7 349 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 BEST2Q8NFU1 509 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 JOSD2Q8TAC2 188 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 CASKIN2Q8WXE0 1202 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 GAD1Q99259 594 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 TRIM51Q9BSJ1 452 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 TRIM31Q9BZY9 425 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 CARD9Q9H257 536 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 AVENQ9NQS1 362 aaPredicted RBP6.61□□□□□ -1.35
CLK1-210ENST00000473565 CNTN3Q9P232 1028 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 RNF14Q9UBS8 474 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 TRPV2Q9Y5S1 764 aa6.61□□□□□ -1.35
CLK1-210ENST00000473565 TARSL2A2RTX5 802 aaKnown RBP6.6□□□□□ -1.35
CLK1-210ENST00000473565 F8VP50 259 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms