RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 PTPN12Q05209 780 aaKnown RBP13.89□□□□□ -0.19
USP40-208ENST00000450966 NR1I3Q14994 352 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 C4orf50Q6ZRC1 276 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 GATAD2AQ86YP4 633 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 MCUQ8NE86 351 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 NT5C1BQ96P26 610 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 FBXO28Q9NVF7 368 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 APPL1Q9UKG1 709 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 AXIN1O15169 862 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 SLC5A9Q2M3M2 681 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 HPS1Q92902 700 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 EPAS1Q99814 870 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 HEY2Q9UBP5 337 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 POTECB2RU33 542 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 ZNF12P17014 697 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 NFKBIAP25963 317 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 PAPD7Q5XG87 772 aaKnown RBP13.89□□□□□ -0.19
USP40-208ENST00000450966 TMPRSS6Q8IU80 811 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 RTL3Q8N8U3 475 aaKnown RBP13.89□□□□□ -0.19
USP40-208ENST00000450966 CENPTQ96BT3 561 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 CPDO75976 1380 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 GYS1P13807 737 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 NR2F2P24468 414 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 CDC42EP1Q00587 391 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 LMBRD2Q68DH5 695 aaPredicted RBP13.89□□□□□ -0.19
USP40-208ENST00000450966 PRCCQ92733 491 aaPredicted RBP13.89□□□□□ -0.19
USP40-208ENST00000450966 APOL6Q9BWW8 343 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 WNT8AQ9H1J5 351 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 GNB5O14775 395 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 PHF2O75151 1096 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 SP100P23497 879 aaPredicted RBP13.88□□□□□ -0.19
USP40-208ENST00000450966 RPS6P62753 249 aaKnown RBP13.88□□□□□ -0.19
USP40-208ENST00000450966 SDE2Q6IQ49 451 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 RBM44Q6ZP01 1051 aaKnown RBP13.88□□□□□ -0.19
USP40-208ENST00000450966 USP38Q8NB14 1042 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 TAGLN3Q9UI15 199 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 SMNDC1O75940 238 aaKnown RBP eCLIP13.88□□□□□ -0.19
USP40-208ENST00000450966 KCNA1Q09470 495 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 TTLL4Q14679 1199 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 RNF19BQ6ZMZ0 732 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 FNIP1Q8TF40 1166 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 TATDN2Q93075 761 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 PHF21AQ96BD5 680 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 ACCSQ96QU6 501 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 PHGDHO43175 533 aaKnown RBP13.88□□□□□ -0.19
USP40-208ENST00000450966 ENO3P13929 434 aaPredicted RBP13.88□□□□□ -0.19
USP40-208ENST00000450966 IST1P53990 364 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 ADAM17P78536 824 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 PUDPQ08623 228 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 ASPSCR1Q9BZE9 553 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 SLC12A6Q9UHW9 1150 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 MYO3AQ8NEV4 1616 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 CYP4A11Q02928 519 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 KCNMA1Q12791 1236 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 DNAJC3Q13217 504 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 TTC13Q8NBP0 860 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 TRNAU1APQ9NX07 287 aaKnown RBP13.88□□□□□ -0.19
USP40-208ENST00000450966 AXIN2Q9Y2T1 843 aa13.88□□□□□ -0.19
USP40-208ENST00000450966 LIFRP42702 1097 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 SNAPC2Q13487 334 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 ACCSLQ4AC99 568 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 PPP4R3CPQ6ZMV5 832 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 OR8H2Q8N162 312 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 DCLK2Q8N568 766 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 CASKIN2Q8WXE0 1202 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 KIAA1024Q9UPX6 916 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 ZHX2Q9Y6X8 837 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 ENTPD3O75355 529 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 PSMC2P35998 433 aaKnown RBP13.87□□□□□ -0.19
USP40-208ENST00000450966 KCNQ4P56696 695 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 PPP1R15BQ5SWA1 713 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 EEF2KMTQ96G04 330 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 MS4A14Q96JA4 679 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 PLEKHG4BQ96PX9 1271 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 PFASO15067 1338 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 SPAG6O75602 509 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 FCER1AP12319 257 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 CPA2P48052 419 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 DARS2Q6PI48 645 aaKnown RBP13.87□□□□□ -0.19
USP40-208ENST00000450966 TMEM79Q9BSE2 394 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 TEX13BQ9BXU2 312 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 REXO4Q9GZR2 422 aaKnown RBP13.87□□□□□ -0.19
USP40-208ENST00000450966 INO80B-WBP1J3KQ70 363 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 ATF4P18848 351 aaPredicted RBP13.87□□□□□ -0.19
USP40-208ENST00000450966 ANXA13P27216 316 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 SERPINH1P50454 418 aaKnown RBP13.87□□□□□ -0.19
USP40-208ENST00000450966 TNFAIP2Q03169 654 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 EPS8Q12929 822 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 TRAF2Q12933 501 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 ZNF846Q147U1 533 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 MAPK11Q15759 364 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 AASDHQ4L235 1098 aaPredicted RBP13.87□□□□□ -0.19
USP40-208ENST00000450966 LIN52Q52LA3 116 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 IZUMO3Q5VZ72 239 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 SLFN12LQ6IEE8 588 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 LVRNQ6Q4G3 990 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 NSUN6Q8TEA1 469 aaKnown RBP13.87□□□□□ -0.19
USP40-208ENST00000450966 GJA10Q969M2 543 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 C12orf4Q9NQ89 552 aa13.87□□□□□ -0.19
USP40-208ENST00000450966 ABCA6Q8N139 1617 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms