RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 GTF3C5Q9Y5Q8 519 aaPredicted RBP28.57■■■□□ 2.16
MSX1-201ENST00000382723 TANC1Q9C0D5 1861 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 FANCGO15287 622 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 INPPL1O15357 1258 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 HUS1O60921 280 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 EN2P19622 333 aaPredicted RBP28.57■■■□□ 2.16
MSX1-201ENST00000382723 UPP1Q16831 310 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 C3orf58Q8NDZ4 430 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 OR6B3Q8NGW1 331 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 KIF18AQ8NI77 898 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 URGCPQ8TCY9 931 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 CPA5Q8WXQ8 436 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 CTNNBL1Q8WYA6 563 aaPredicted RBP28.57■■■□□ 2.16
MSX1-201ENST00000382723 HEXIM2Q96MH2 286 aaKnown RBP28.57■■■□□ 2.16
MSX1-201ENST00000382723 THAP2Q9H0W7 228 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 LRFN2Q9ULH4 789 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 L1RE1Q9UN81 338 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 SCN5AQ14524 2016 aa28.57■■■□□ 2.16
MSX1-201ENST00000382723 KIAA0100Q14667 2235 aaKnown RBP28.56■■■□□ 2.16
MSX1-201ENST00000382723 TUSC3Q13454 348 aa28.56■■■□□ 2.16
MSX1-201ENST00000382723 NAA35Q5VZE5 725 aa28.56■■■□□ 2.16
MSX1-201ENST00000382723 NT5C1AQ9BXI3 368 aa28.56■■■□□ 2.16
MSX1-201ENST00000382723 FAM124BQ9H5Z6 455 aaPredicted RBP28.56■■■□□ 2.16
MSX1-201ENST00000382723 ELAC1Q9H777 363 aaKnown RBP28.56■■■□□ 2.16
MSX1-201ENST00000382723 MYO1AQ9UBC5 1043 aa28.56■■■□□ 2.16
MSX1-201ENST00000382723 LOC101059915A0A1B0GWI6 518 aaPredicted RBP28.55■■■□□ 2.16
MSX1-201ENST00000382723 ANKRD62A6NC57 917 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 TRIM43BA6NCK2 446 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 CYB561D2O14569 222 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 CAPN2P17655 700 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 CASQ1P31415 396 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 SMYD5Q6GMV2 418 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 ACAD10Q6JQN1 1059 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 DPH6Q7L8W6 267 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 TRIM43Q96BQ3 446 aaPredicted RBP28.55■■■□□ 2.16
MSX1-201ENST00000382723 PCDH10Q9P2E7 1040 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 CYP1A1P04798 512 aaPredicted RBP28.55■■■□□ 2.16
MSX1-201ENST00000382723 TMEM253P0C7T8 217 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 UNGP13051 313 aaPredicted RBP28.55■■■□□ 2.16
MSX1-201ENST00000382723 ITGB8P26012 769 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 PAN2Q504Q3 1202 aaKnown RBP28.55■■■□□ 2.16
MSX1-201ENST00000382723 PDZRN4Q6ZMN7 1036 aaPredicted RBP28.55■■■□□ 2.16
MSX1-201ENST00000382723 ABI1Q8IZP0 508 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 KBTBD7Q8WVZ9 684 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 NME7Q9Y5B8 376 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 CAPN6Q9Y6Q1 641 aa28.55■■■□□ 2.16
MSX1-201ENST00000382723 ATP8B3O60423 1300 aa28.54■■■□□ 2.16
MSX1-201ENST00000382723 RNASELQ05823 741 aaKnown RBP28.54■■■□□ 2.16
MSX1-201ENST00000382723 TRIM72Q6ZMU5 477 aa28.54■■■□□ 2.16
MSX1-201ENST00000382723 ZNF280BQ86YH2 543 aa28.54■■■□□ 2.16
MSX1-201ENST00000382723 ADGRF2Q8IZF7 708 aa28.54■■■□□ 2.16
MSX1-201ENST00000382723 ARHGEF26Q96DR7 871 aa28.54■■■□□ 2.16
MSX1-201ENST00000382723 DDX27Q96GQ7 796 aaKnown RBP28.54■■■□□ 2.16
MSX1-201ENST00000382723 NOX5Q96PH1 765 aa28.54■■■□□ 2.16
MSX1-201ENST00000382723 A8MXQ7 604 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 HCRTO43612 131 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 TACC1O75410 805 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 B3GAT3O94766 335 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 NOP2P46087 812 aaKnown RBP28.53■■■□□ 2.16
MSX1-201ENST00000382723 GATMP50440 423 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 ACOT1Q86TX2 421 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 PDCL2Q8N4E4 241 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 SENP8Q96LD8 212 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 SNX25Q9H3E2 840 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 TET1Q8NFU7 2136 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 MED7O43513 233 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 DDHD2O94830 711 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 TIMP1P01033 207 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 PDGFRBP09619 1106 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 GNL1P36915 607 aaPredicted RBP28.53■■■□□ 2.16
MSX1-201ENST00000382723 NSFP46459 744 aaKnown RBP28.53■■■□□ 2.16
MSX1-201ENST00000382723 DSTYKQ6XUX3 929 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 FAM43BQ6ZT52 329 aaPredicted RBP28.53■■■□□ 2.16
MSX1-201ENST00000382723 RNF10Q8N5U6 811 aaKnown RBP28.53■■■□□ 2.16
MSX1-201ENST00000382723 TOP6BLQ8N6T0 577 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 HASPINQ8TF76 798 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 TBC1D13Q9NVG8 400 aa28.53■■■□□ 2.16
MSX1-201ENST00000382723 MKI67P46013 3256 aaKnown RBP28.52■■■□□ 2.16
MSX1-201ENST00000382723 BTNL10A8MVZ5 291 aa28.52■■■□□ 2.16
MSX1-201ENST00000382723 B4GALT3O60512 393 aa28.52■■■□□ 2.16
MSX1-201ENST00000382723 RAG1P15918 1043 aa28.52■■■□□ 2.16
MSX1-201ENST00000382723 NOMO3P69849 1222 aa28.52■■■□□ 2.16
MSX1-201ENST00000382723 LIMS2Q7Z4I7 341 aa28.52■■■□□ 2.16
MSX1-201ENST00000382723 UROC1Q96N76 676 aa28.52■■■□□ 2.16
MSX1-201ENST00000382723 KANSL3Q9P2N6 904 aa28.52■■■□□ 2.16
MSX1-201ENST00000382723 ATMINO43313 823 aaPredicted RBP28.51■■■□□ 2.16
MSX1-201ENST00000382723 VDRP11473 427 aa28.51■■■□□ 2.16
MSX1-201ENST00000382723 LMO2P25791 158 aa28.51■■■□□ 2.16
MSX1-201ENST00000382723 RFC2P35250 354 aa28.51■■■□□ 2.16
MSX1-201ENST00000382723 IKBKEQ14164 716 aa28.51■■■□□ 2.16
MSX1-201ENST00000382723 SGO2Q562F6 1265 aa28.51■■■□□ 2.16
MSX1-201ENST00000382723 WSCD1Q658N2 575 aa28.51■■■□□ 2.16
MSX1-201ENST00000382723 CNKSR3Q6P9H4 555 aa28.51■■■□□ 2.16
MSX1-201ENST00000382723 C12orf29Q8N999 325 aa28.51■■■□□ 2.16
MSX1-201ENST00000382723 VWCEQ96DN2 955 aa28.51■■■□□ 2.16
MSX1-201ENST00000382723 DPEP3Q9H4B8 488 aa28.51■■■□□ 2.16
MSX1-201ENST00000382723 CHORDC1Q9UHD1 332 aaPredicted RBP28.51■■■□□ 2.16
MSX1-201ENST00000382723 PCDHGC3Q9UN70 934 aa28.51■■■□□ 2.16
MSX1-201ENST00000382723 I3L4J1 428 aa28.51■■■□□ 2.15
MSX1-201ENST00000382723 GPC5P78333 572 aa28.51■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms