RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 UBR7Q8N806 425 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 HDAC7Q8WUI4 952 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 PARP2Q9UGN5 583 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 GTF3C4Q9UKN8 822 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 MAP2K7O14733 419 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 CEP104O60308 925 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 UNGP13051 313 aaPredicted RBP24.11■■□□□ 1.45
CDX1-201ENST00000231656 ADAM2Q99965 735 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 CNTN3Q9P232 1028 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 ATP11BQ9Y2G3 1177 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 PCDHB4Q9Y5E5 795 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 TANC1Q9C0D5 1861 aa24.1■■□□□ 1.45
CDX1-201ENST00000231656 ZMYND10O75800 440 aa24.1■■□□□ 1.45
CDX1-201ENST00000231656 GPNMBQ14956 572 aa24.1■■□□□ 1.45
CDX1-201ENST00000231656 GLE1Q53GS7 698 aaKnown RBP24.1■■□□□ 1.45
CDX1-201ENST00000231656 KIF12Q96FN5 646 aa24.1■■□□□ 1.45
CDX1-201ENST00000231656 ZMAT2Q96NC0 199 aaKnown RBP24.1■■□□□ 1.45
CDX1-201ENST00000231656 HIPK3Q9H422 1215 aa24.1■■□□□ 1.45
CDX1-201ENST00000231656 KLK14Q9P0G3 267 aa24.1■■□□□ 1.45
CDX1-201ENST00000231656 DMGDHQ9UI17 866 aaKnown RBP24.1■■□□□ 1.45
CDX1-201ENST00000231656 DERAQ9Y315 318 aa24.1■■□□□ 1.45
CDX1-201ENST00000231656 ATMINO43313 823 aaPredicted RBP24.09■■□□□ 1.45
CDX1-201ENST00000231656 NBNO60934 754 aa24.09■■□□□ 1.45
CDX1-201ENST00000231656 RNASE9P60153 205 aaKnown RBP24.09■■□□□ 1.45
CDX1-201ENST00000231656 C8orf74Q6P047 294 aa24.09■■□□□ 1.45
CDX1-201ENST00000231656 CCNI2Q6ZMN8 369 aaPredicted RBP24.09■■□□□ 1.45
CDX1-201ENST00000231656 C1orf127Q8N9H9 656 aa24.09■■□□□ 1.45
CDX1-201ENST00000231656 TET1Q8NFU7 2136 aa24.09■■□□□ 1.45
CDX1-201ENST00000231656 ZNF653Q96CK0 615 aa24.09■■□□□ 1.45
CDX1-201ENST00000231656 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.09■■□□□ 1.45
CDX1-201ENST00000231656 IMPG2Q9BZV3 1241 aa24.09■■□□□ 1.45
CDX1-201ENST00000231656 SCN5AQ14524 2016 aa24.09■■□□□ 1.45
CDX1-201ENST00000231656 PGRMC1O00264 195 aaKnown RBP24.08■■□□□ 1.45
CDX1-201ENST00000231656 ZNF623O75123 536 aa24.08■■□□□ 1.45
CDX1-201ENST00000231656 RAB27AP51159 221 aa24.08■■□□□ 1.45
CDX1-201ENST00000231656 ZNF132P52740 706 aa24.08■■□□□ 1.45
CDX1-201ENST00000231656 MYL6P60660 151 aa24.08■■□□□ 1.45
CDX1-201ENST00000231656 LRRC26Q2I0M4 334 aa24.08■■□□□ 1.45
CDX1-201ENST00000231656 XKR4Q5GH76 650 aa24.08■■□□□ 1.45
CDX1-201ENST00000231656 TMEM270Q6UE05 265 aa24.08■■□□□ 1.45
CDX1-201ENST00000231656 HDXQ7Z353 690 aa24.08■■□□□ 1.45
CDX1-201ENST00000231656 NECAB2Q7Z6G3 386 aa24.08■■□□□ 1.45
CDX1-201ENST00000231656 TMEM130Q8N3G9 435 aa24.08■■□□□ 1.45
CDX1-201ENST00000231656 RBBP8NLQ8NC74 664 aaPredicted RBP24.08■■□□□ 1.45
CDX1-201ENST00000231656 CHORDC1Q9UHD1 332 aaPredicted RBP24.08■■□□□ 1.45
CDX1-201ENST00000231656 SIX4Q9UIU6 781 aa24.08■■□□□ 1.45
CDX1-201ENST00000231656 ALG6Q9Y672 507 aa24.08■■□□□ 1.45
CDX1-201ENST00000231656 A0A0U1RQF3 1178 aa24.08■■□□□ 1.44
CDX1-201ENST00000231656 MEIS3P2A8K0S8 358 aa24.08■■□□□ 1.44
CDX1-201ENST00000231656 CYP1A1P04798 512 aaPredicted RBP24.08■■□□□ 1.44
CDX1-201ENST00000231656 TRPC3Q13507 836 aa24.08■■□□□ 1.44
CDX1-201ENST00000231656 ZBTB6Q15916 424 aa24.08■■□□□ 1.44
CDX1-201ENST00000231656 GLRA4Q5JXX5 417 aa24.08■■□□□ 1.44
CDX1-201ENST00000231656 DCAF12L1Q5VU92 463 aa24.08■■□□□ 1.44
CDX1-201ENST00000231656 MRPL10Q7Z7H8 261 aaKnown RBP24.08■■□□□ 1.44
CDX1-201ENST00000231656 HACE1Q8IYU2 909 aa24.08■■□□□ 1.44
CDX1-201ENST00000231656 CXorf38Q8TB03 319 aa24.08■■□□□ 1.44
CDX1-201ENST00000231656 NUP85Q9BW27 656 aa24.08■■□□□ 1.44
CDX1-201ENST00000231656 UVRAGQ9P2Y5 699 aa24.08■■□□□ 1.44
CDX1-201ENST00000231656 ITGA4P13612 1032 aa24.07■■□□□ 1.44
CDX1-201ENST00000231656 MRPS25P82663 173 aaKnown RBP24.07■■□□□ 1.44
CDX1-201ENST00000231656 SLC7A5Q01650 507 aa24.07■■□□□ 1.44
CDX1-201ENST00000231656 SGSM1Q2NKQ1 1148 aa24.07■■□□□ 1.44
CDX1-201ENST00000231656 RTN4RL1Q86UN2 441 aaPredicted RBP24.07■■□□□ 1.44
CDX1-201ENST00000231656 ZNF564Q8TBZ8 553 aaPredicted RBP24.07■■□□□ 1.44
CDX1-201ENST00000231656 PPP1R12CQ9BZL4 782 aa24.07■■□□□ 1.44
CDX1-201ENST00000231656 RNF19AQ9NV58 838 aa24.07■■□□□ 1.44
CDX1-201ENST00000231656 STIM2Q9P246 746 aa24.07■■□□□ 1.44
CDX1-201ENST00000231656 TBX21Q9UL17 535 aa24.07■■□□□ 1.44
CDX1-201ENST00000231656 TTC7AQ9ULT0 858 aaPredicted RBP24.07■■□□□ 1.44
CDX1-201ENST00000231656 SMIM28A0A1B0GU29 152 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 ITGB3P05106 788 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 KRT19P08727 400 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 MYBL2P10244 700 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 KCNE1P15382 129 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 MAP9Q49MG5 647 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 PLEKHG4Q58EX7 1191 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 LPPQ93052 612 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 SCLYQ96I15 445 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 RPS6KC1Q96S38 1066 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 UBXN6Q9BZV1 441 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 NIF3L1Q9GZT8 377 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 WNT8AQ9H1J5 351 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 RGS18Q9NS28 235 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 DPP3Q9NY33 737 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 ATF7P17544 494 aaPredicted RBP24.06■■□□□ 1.44
CDX1-201ENST00000231656 GNA15P30679 374 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 GUCY2FP51841 1108 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 CCL23P55773 120 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 TNNC1P63316 161 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 CENPCQ03188 943 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 TRIM72Q6ZMU5 477 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 AGMOQ6ZNB7 445 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 MCOLN2Q8IZK6 566 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 ZFP42Q96MM3 310 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 TSPAN18Q96SJ8 248 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 KRT12Q99456 494 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 FTHL17Q9BXU8 183 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 XYLT2Q9H1B5 865 aa24.06■■□□□ 1.44
CDX1-201ENST00000231656 CARD9Q9H257 536 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms