RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 SUSD3Q96L08 255 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 TRIM5Q9C035 493 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 XPO4Q9C0E2 1151 aaKnown RBP16.14■□□□□ 0.17
TRIM28-207ENST00000597136 TLE6Q9H808 572 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 RTN4Q9NQC3 1192 aaKnown RBP16.14■□□□□ 0.17
TRIM28-207ENST00000597136 TIMM13Q9Y5L4 95 aaPredicted RBP16.14■□□□□ 0.17
TRIM28-207ENST00000597136 IRAK3Q9Y616 596 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 NCOR1O75376 2440 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 PTPRDP23468 1912 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 LGALS16A8MUM7 142 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 PES1O00541 588 aaKnown RBP16.13■□□□□ 0.17
TRIM28-207ENST00000597136 TNNC2P02585 160 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 KRT19P08727 400 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 CNPP09543 421 aaKnown RBP16.13■□□□□ 0.17
TRIM28-207ENST00000597136 PDE12Q6L8Q7 609 aaKnown RBP16.13■□□□□ 0.17
TRIM28-207ENST00000597136 KIAA1841Q6NSI8 718 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 RSPO2Q6UXX9 243 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-207ENST00000597136 LNX1Q8TBB1 728 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-207ENST00000597136 ANKRD36BP1Q96IX9 119 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 KLHL5Q96PQ7 755 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 TTPALQ9BTX7 342 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 MRPL17Q9NRX2 175 aaKnown RBP16.13■□□□□ 0.17
TRIM28-207ENST00000597136 NOTCH4Q99466 2003 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 ADAM12O43184 909 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 TEX33O43247 280 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 CBFA2T2O43439 604 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 TRAPPC3O43617 180 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 CLASP2O75122 1294 aaKnown RBP16.13■□□□□ 0.17
TRIM28-207ENST00000597136 AFPP02771 609 aaKnown RBP16.13■□□□□ 0.17
TRIM28-207ENST00000597136 C4BPAP04003 597 aaKnown RBP16.13■□□□□ 0.17
TRIM28-207ENST00000597136 URODP06132 367 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 AARSP49588 968 aaKnown RBP eCLIP16.13■□□□□ 0.17
TRIM28-207ENST00000597136 PPP3CAQ08209 521 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 VN1R2Q8NFZ6 395 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 SENP8Q96LD8 212 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 ITGA11Q9UKX5 1188 aa16.13■□□□□ 0.17
TRIM28-207ENST00000597136 M0QZQ0 153 aa16.12■□□□□ 0.17
TRIM28-207ENST00000597136 TEX28O15482 410 aa16.12■□□□□ 0.17
TRIM28-207ENST00000597136 STX10O60499 249 aa16.12■□□□□ 0.17
TRIM28-207ENST00000597136 GTF2H1P32780 548 aa16.12■□□□□ 0.17
TRIM28-207ENST00000597136 TAF6P49848 677 aa16.12■□□□□ 0.17
TRIM28-207ENST00000597136 ZNF75DP51815 510 aa16.12■□□□□ 0.17
TRIM28-207ENST00000597136 RBP5P82980 135 aa16.12■□□□□ 0.17
TRIM28-207ENST00000597136 UBXN1Q04323 297 aa16.12■□□□□ 0.17
TRIM28-207ENST00000597136 DLX2Q07687 328 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-207ENST00000597136 ELAVL2Q12926 359 aaKnown RBP16.12■□□□□ 0.17
TRIM28-207ENST00000597136 SKIV2LQ15477 1246 aaKnown RBP16.12■□□□□ 0.17
TRIM28-207ENST00000597136 DUSP6Q16828 381 aa16.12■□□□□ 0.17
TRIM28-207ENST00000597136 TDRD10Q5VZ19 366 aaKnown RBP16.12■□□□□ 0.17
TRIM28-207ENST00000597136 DSTYKQ6XUX3 929 aa16.12■□□□□ 0.17
TRIM28-207ENST00000597136 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-207ENST00000597136 CLSTN3Q9BQT9 956 aa16.12■□□□□ 0.17
TRIM28-207ENST00000597136 RXFP1Q9HBX9 757 aa16.12■□□□□ 0.17
TRIM28-207ENST00000597136 ZNF638Q14966 1978 aaKnown RBP16.12■□□□□ 0.17
TRIM28-207ENST00000597136 LRRN2O75325 713 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 VNN1O95497 513 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 ADCY5O95622 1261 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 GLP2RO95838 553 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 TPM3P06753 285 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 LTBRP36941 435 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 GCLMP48507 274 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 FMO5P49326 533 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 ADAM15Q13444 863 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 KCNC3Q14003 757 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 PSMD5Q16401 504 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 CBWD6Q4V339 395 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 CBWD3Q5JTY5 395 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 CBWD5Q5RIA9 395 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 VARS2Q5ST30 1063 aaKnown RBP16.11■□□□□ 0.17
TRIM28-207ENST00000597136 LLGL2Q6P1M3 1020 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 EP400NLQ6ZTU2 488 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 PIK3R5Q8WYR1 880 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 MMRN2Q9H8L6 949 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 STK39Q9UEW8 545 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 PCDHB8Q9UN66 801 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.11■□□□□ 0.17
TRIM28-207ENST00000597136 GREB1Q4ZG55 1949 aa16.11■□□□□ 0.17
TRIM28-207ENST00000597136 KPNA7A9QM74 516 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 PMM2O15305 246 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 SPATA31D3P0C874 917 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 KLRC2P26717 231 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 MYL6P60660 151 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 MRPL58Q14197 206 aaKnown RBP16.1■□□□□ 0.17
TRIM28-207ENST00000597136 BMS1Q14692 1282 aaKnown RBP16.1■□□□□ 0.17
TRIM28-207ENST00000597136 CTC1Q2NKJ3 1217 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 FKBP15Q5T1M5 1219 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 DENND4CQ5VZ89 1909 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 C15orf39Q6ZRI6 1047 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 SPATA31D4Q6ZUB0 917 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 SV2AQ7L0J3 742 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 PALB2Q86YC2 1186 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 MRFAP1L1Q96HT8 127 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 HPDLQ96IR7 371 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 TMEM8AQ9HCN3 771 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 CLDND1Q9NY35 253 aa16.1■□□□□ 0.17
TRIM28-207ENST00000597136 CYB561D2O14569 222 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 N4BP1O75113 896 aaKnown RBP16.09■□□□□ 0.17
TRIM28-207ENST00000597136 EPCAMP16422 314 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 AP3M2P53677 418 aa16.09■□□□□ 0.17
TRIM28-207ENST00000597136 BIRC3Q13489 604 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms