RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 UTP6Q9NYH9 597 aaKnown RBP8.2□□□□□ -1.1
VPS13D-211ENST00000543710 MYO1CO00159 1063 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 APOA1P02647 267 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 GNA15P30679 374 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 NPY2RP49146 381 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 ANXA11P50995 505 aaKnown RBP8.19□□□□□ -1.1
VPS13D-211ENST00000543710 C1orf146Q5VVC0 180 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 PADI6Q6TGC4 694 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 CCDC149Q6ZUS6 474 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 WNK4Q96J92 1243 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 MAGEB18Q96M61 343 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 NEUROG2Q9H2A3 272 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 TLE6Q9H808 572 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 NYAP2Q9P242 653 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 ADAM21Q9UKJ8 722 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 KIAA1257Q9ULG3 409 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 ABCC6O95255 1503 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 HNRNPCL2B2RXH8 293 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 SORBS3O60504 671 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 CTSHP09668 335 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 NCF2P19878 526 aaPredicted RBP8.19□□□□□ -1.1
VPS13D-211ENST00000543710 PSMA3P25788 255 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 PMLP29590 882 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 KRT72Q14CN4 511 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 PSMD6Q15008 389 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 FAM83BQ5T0W9 1011 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 FAM173BQ6P4H8 233 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 LVRNQ6Q4G3 990 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 PALB2Q86YC2 1186 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 STAG2Q8N3U4 1231 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 TTLL11Q8NHH1 800 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 ATOH1Q92858 354 aaPredicted RBP8.19□□□□□ -1.1
VPS13D-211ENST00000543710 CAVIN3Q969G5 261 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 TTC17Q96AE7 1141 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 RMDN3Q96TC7 470 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 C10orf88Q9H8K7 445 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.19□□□□□ -1.1
VPS13D-211ENST00000543710 APEX2Q9UBZ4 518 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 GGA2Q9UJY4 613 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 APPL1Q9UKG1 709 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 STARD13Q9Y3M8 1113 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 USP15Q9Y4E8 981 aaPredicted RBP8.19□□□□□ -1.1
VPS13D-211ENST00000543710 BRAFP15056 766 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 SDC4P31431 198 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 FOXR2Q6PJQ5 311 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 RBM43Q6ZSC3 357 aaKnown RBP8.19□□□□□ -1.1
VPS13D-211ENST00000543710 NEDD1Q8NHV4 660 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 TRPC4APQ8TEL6 797 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 ZNF473Q8WTR7 871 aaKnown RBP8.19□□□□□ -1.1
VPS13D-211ENST00000543710 C19orf60Q96EN9 201 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 CEP95Q96GE4 821 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 PSMB7Q99436 277 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 ANKEF1Q9NU02 776 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 CDYLQ9Y232 598 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 COPG1Q9Y678 874 aaKnown RBP8.19□□□□□ -1.1
VPS13D-211ENST00000543710 KLHL41O60662 606 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 VPS4BO75351 444 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 DNAJB2P25686 324 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 CDC27P30260 824 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 PRCPP42785 496 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 PPM1LQ5SGD2 360 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 WLSQ5T9L3 541 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 ADSSL1Q8N142 457 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 PCYOX1LQ8NBM8 494 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 FSD1LQ9BXM9 530 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 ABCG4Q9H172 646 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 ANAPC7Q9UJX3 599 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 TRAF3IP3Q9Y228 551 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 ANKRD6Q9Y2G4 727 aa8.19□□□□□ -1.1
VPS13D-211ENST00000543710 K7ERI5 159 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 HUS1O60921 280 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 GARTP22102 1010 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 PDE1CQ14123 709 aaPredicted RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 MORF4L2Q15014 288 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 BEND6Q5SZJ8 279 aaPredicted RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 TMCO4Q5TGY1 634 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 SMYD5Q6GMV2 418 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 CCDC137Q6PK04 289 aaKnown RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 CDK5RAP1Q96SZ6 601 aaKnown RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 ITM2BQ9Y287 266 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 CDY2AQ9Y6F7 541 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 CDY1Q9Y6F8 540 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 GNSP15586 552 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 FBLN1P23142 703 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 C21orf59P57076 290 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 DEFA1P59665 94 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 DEFA3P59666 94 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 WASHC5Q12768 1159 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 MEI1Q5TIA1 1274 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 NUGGCQ68CJ6 796 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 PRR23BQ6ZRT6 265 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 ARMC2Q8NEN0 867 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 ERGIC2Q96RQ1 377 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 DNAJC7Q99615 494 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 EPS8L2Q9H6S3 715 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 TLR7Q9NYK1 1049 aaKnown RBP8.18□□□□□ -1.1
VPS13D-211ENST00000543710 DCDC2Q9UHG0 476 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 KIDINS220Q9ULH0 1771 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 MAGEA13PA6NCF6 341 aa8.18□□□□□ -1.1
VPS13D-211ENST00000543710 TM9SF1O15321 606 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms