RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	PSMG2	Q969U7	264 aa		13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	TMEM209	Q96SK2	561 aa		13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	ACO2	Q99798	780 aa	Known RBP	13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	MKNK1	Q9BUB5	465 aa		13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	ADAM33	Q9BZ11	813 aa		13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	TMEM134	Q9H6X4	195 aa		13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	PDRG1	Q9NUG6	133 aa		13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	THG1L	Q9NWX6	298 aa	Known RBP	13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	ORC3	Q9UBD5	711 aa	Predicted RBP	13.57	□□□□□ -0.24
CAPN1-223	ENST00000533079	F5	P12259	2224 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079		A0A087WWV3	80 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	OR6C75	A6NL08	312 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	C1QTNF9B	B2RNN3	333 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079		M0QZQ0	153 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	EXTL3	O43909	919 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	C1QTNF9	P0C862	333 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	PROZ	P22891	400 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	NOVA1	P51513	510 aa	Known RBP	13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	OSTN	P61366	133 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	ZNF252P-AS1	Q0IIN9	211 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	GRSF1	Q12849	480 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	GPR17	Q13304	367 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	CCDC6	Q16204	474 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	TMEM196	Q5HYL7	178 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	DAB2IP	Q5VWQ8	1189 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	MPZL3	Q6UWV2	235 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	C11orf74	Q86VG3	221 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	EXOC4	Q96A65	974 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	LARP6	Q9BRS8	491 aa	Known RBP	13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	DNAJC25	Q9H1X3	360 aa		13.56	□□□□□ -0.24
CAPN1-223	ENST00000533079	RHOBTB1	O94844	696 aa		13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	AARS	P49588	968 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	AMPD2	Q01433	879 aa		13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	DMP1	Q13316	513 aa	Predicted RBP	13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	MYBPC2	Q14324	1141 aa		13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	PLK5	Q496M5	336 aa		13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	STXBP5	Q5T5C0	1151 aa		13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	GPR158	Q5T848	1215 aa		13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	DIS3L2	Q8IYB7	885 aa	Known RBP	13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	C18orf25	Q96B23	403 aa	Predicted RBP	13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	ZFYVE19	Q96K21	471 aa		13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	GCNA	Q96QF7	691 aa		13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	ATXN3L	Q9H3M9	355 aa		13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	C17orf75	Q9HAS0	396 aa		13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	ARHGAP28	Q9P2N2	729 aa		13.55	□□□□□ -0.24
CAPN1-223	ENST00000533079	TRIP11	Q15643	1979 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	CIT	O14578	2027 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	WNT7A	O00755	349 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	CTDNEP1	O95476	244 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	VNN2	O95498	520 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	CEACAM1	P13688	526 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	PAX3	P23760	479 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	GABRR2	P28476	465 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	CDC25C	P30307	473 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	LRPAP1	P30533	357 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	CACNB1	Q02641	598 aa	Predicted RBP	13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	TRIM29	Q14134	588 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	FBXO43	Q4G163	708 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	GAREM2	Q75VX8	874 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	USP37	Q86T82	979 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	DRC1	Q96MC2	740 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	LRRC3B	Q96PB8	259 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	TMEM60	Q9H2L4	133 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	BHMT2	Q9H2M3	363 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	TASP1	Q9H6P5	420 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	PLEKHA5	Q9HAU0	1116 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	WASF3	Q9UPY6	502 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	STK24	Q9Y6E0	443 aa		13.54	□□□□□ -0.24
CAPN1-223	ENST00000533079	TSC2	P49815	1807 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	MTMR11	A4FU01	709 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	BTBD18	B2RXH4	712 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	ABLIM1	O14639	778 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	TRDMT1	O14717	391 aa	Known RBP	13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	PRAMEF12	O95522	483 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	CAVIN2	O95810	425 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	OR52Z1	P0C646	297 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	CYP3A5	P20815	502 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	CSRP1	P21291	193 aa	Known RBP	13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	DRD1	P21728	446 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	MCM7	P33993	719 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	NPTX2	P47972	431 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	PXN	P49023	591 aa	Predicted RBP	13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	TNK2	Q07912	1038 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	DUSP4	Q13115	394 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	VEPH1	Q14D04	833 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	ANKRD1	Q15327	319 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	CENPP	Q6IPU0	288 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	TTC8	Q8TAM2	541 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	ACD	Q96AP0	544 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	PGLYRP2	Q96PD5	576 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	TCHP	Q9BT92	498 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	DUSP15	Q9H1R2	295 aa	Predicted RBP	13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	CRISPLD1	Q9H336	500 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	SMOC1	Q9H4F8	434 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	KIF9	Q9HAQ2	790 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	TUBGCP4	Q9UGJ1	667 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	EBF1	Q9UH73	591 aa		13.53	□□□□□ -0.24
CAPN1-223	ENST00000533079	LNP1	A1A4G5	178 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms