RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 GJA10Q969M2 543 aa5.52□□□□□ -1.53
CCDC54-201ENST00000261058 TRIM43Q96BQ3 446 aaPredicted RBP5.52□□□□□ -1.53
CCDC54-201ENST00000261058 C8orf49Q96NF6 230 aa5.52□□□□□ -1.53
CCDC54-201ENST00000261058 UNKQ9C0B0 810 aaKnown RBP5.52□□□□□ -1.53
CCDC54-201ENST00000261058 DEF6Q9H4E7 631 aa5.52□□□□□ -1.53
CCDC54-201ENST00000261058 KIAA1586Q9HCI6 787 aa5.52□□□□□ -1.53
CCDC54-201ENST00000261058 SLAMF7Q9NQ25 335 aa5.52□□□□□ -1.53
CCDC54-201ENST00000261058 ETAA1Q9NY74 926 aa5.52□□□□□ -1.53
CCDC54-201ENST00000261058 CEP72Q9P209 647 aa5.52□□□□□ -1.53
CCDC54-201ENST00000261058 COL20A1Q9P218 1284 aa5.52□□□□□ -1.53
CCDC54-201ENST00000261058 HSFX1Q9UBD0 423 aa5.52□□□□□ -1.53
CCDC54-201ENST00000261058 CPNE7Q9UBL6 633 aa5.52□□□□□ -1.53
CCDC54-201ENST00000261058 PLEKHM1Q9Y4G2 1056 aa5.52□□□□□ -1.53
CCDC54-201ENST00000261058 PAXBP1Q9Y5B6 917 aa5.52□□□□□ -1.53
CCDC54-201ENST00000261058 A0A087WWL8 130 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 BTN3A1O00481 513 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 MUSKO15146 869 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 ELANEP08246 267 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 PIM1P11309 404 aaPredicted RBP5.51□□□□□ -1.53
CCDC54-201ENST00000261058 MAGEA10P43363 369 aaPredicted RBP5.51□□□□□ -1.53
CCDC54-201ENST00000261058 TOB1P50616 345 aaPredicted RBP5.51□□□□□ -1.53
CCDC54-201ENST00000261058 SUMO3P55854 103 aaPredicted RBP5.51□□□□□ -1.53
CCDC54-201ENST00000261058 RNASE9P60153 205 aaKnown RBP5.51□□□□□ -1.53
CCDC54-201ENST00000261058 OCA2Q04671 838 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 CNGB1Q14028 1251 aaPredicted RBP5.51□□□□□ -1.53
CCDC54-201ENST00000261058 PDCD4Q53EL6 469 aaKnown RBP5.51□□□□□ -1.53
CCDC54-201ENST00000261058 RABL3Q5HYI8 236 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 ZNF783Q6ZMS7 281 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 GDF7Q7Z4P5 450 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 MICU3Q86XE3 530 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 CFAP52Q8N1V2 620 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 OR6B3Q8NGW1 331 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 DVL3Q92997 716 aaPredicted RBP5.51□□□□□ -1.53
CCDC54-201ENST00000261058 MARS2Q96GW9 593 aaKnown RBP5.51□□□□□ -1.53
CCDC54-201ENST00000261058 PNKPQ96T60 521 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 REXO4Q9GZR2 422 aaKnown RBP5.51□□□□□ -1.53
CCDC54-201ENST00000261058 SIK2Q9H0K1 926 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 RNPEPQ9H4A4 650 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 CTTNBP2NLQ9P2B4 639 aa5.51□□□□□ -1.53
CCDC54-201ENST00000261058 AFF4Q9UHB7 1163 aaKnown RBP5.51□□□□□ -1.53
CCDC54-201ENST00000261058 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.51□□□□□ -1.53
CCDC54-201ENST00000261058 A0A1B0GTW7 788 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 GAGE12BA1L429 117 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 GAGE12HA6NDE8 117 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 BRAFP15056 766 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 PRIM2P49643 509 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 HTRA4P83105 476 aaPredicted RBP5.5□□□□□ -1.53
CCDC54-201ENST00000261058 ZNF543Q08ER8 600 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 CRHR2Q13324 411 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 IFIT5Q13325 482 aaKnown RBP5.5□□□□□ -1.53
CCDC54-201ENST00000261058 TSHZ3Q63HK5 1081 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 RNF152Q8N8N0 203 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 SLC17A8Q8NDX2 589 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 CHST13Q8NET6 341 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 IL17DQ8TAD2 202 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 LRIG1Q96JA1 1093 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 MED15Q96RN5 788 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 CDK5RAP1Q96SZ6 601 aaKnown RBP5.5□□□□□ -1.53
CCDC54-201ENST00000261058 ELAC2Q9BQ52 826 aaKnown RBP5.5□□□□□ -1.53
CCDC54-201ENST00000261058 CNPPD1Q9BV87 410 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 COLEC11Q9BWP8 271 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 SLC46A2Q9BY10 475 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 TEX101Q9BY14 249 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 CHMP4AQ9BY43 222 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 IMPG2Q9BZV3 1241 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 MRPS18AQ9NVS2 196 aaKnown RBP5.5□□□□□ -1.53
CCDC54-201ENST00000261058 DKK2Q9UBU2 259 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 SRRDQ9UH36 339 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 OGDHLQ9ULD0 1010 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 ATP11BQ9Y2G3 1177 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 TSC22D4Q9Y3Q8 395 aa5.5□□□□□ -1.53
CCDC54-201ENST00000261058 USP15Q9Y4E8 981 aaPredicted RBP5.5□□□□□ -1.53
CCDC54-201ENST00000261058 RHPN2P1A8MT19 583 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 RASA4BC9J798 803 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 F8W8V4 182 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 RASA4O43374 803 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 UNC5CO95185 931 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 CFIP05156 583 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 TSHRP16473 764 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 ZNF20P17024 532 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 FGFR4P22455 802 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 KCNJ5P48544 419 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 SLC11A2P49281 568 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 ADAM17P78536 824 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 SLC13A2Q13183 592 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 CTBP1Q13363 440 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 FAM160B1Q5W0V3 765 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 TOGARAM2Q6ZUX3 1019 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 DPP9Q86TI2 863 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 POC1BQ8TC44 478 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 PMM1Q92871 262 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 FUBP1Q96AE4 644 aaKnown RBP5.49□□□□□ -1.53
CCDC54-201ENST00000261058 PHACTR3Q96KR7 559 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 SPATA5L1Q9BVQ7 753 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 ZNF518BQ9C0D4 1074 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 ZNF287Q9HBT7 754 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 EIF2B4Q9UI10 523 aaKnown RBP5.49□□□□□ -1.53
CCDC54-201ENST00000261058 SORCS3Q9UPU3 1222 aa5.49□□□□□ -1.53
CCDC54-201ENST00000261058 RPS6KA4O75676 772 aa5.48□□□□□ -1.53
CCDC54-201ENST00000261058 RECQL4O94761 1208 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms