RNA–Protein interactions for RNA: YIR009W

MSL1, Transcript of U2B component of U2 snRNP, yeastyeast

Gene MSL1, Length 336 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSL1YIR009W YPT52P36018 234 aaKnown RBP1.51□□□□□ -2.17
MSL1YIR009W ECM33P38248 429 aaKnown RBP1.51□□□□□ -2.17
MSL1YIR009W DOG2P38773 246 aa1.51□□□□□ -2.17
MSL1YIR009W DOG1P38774 246 aa1.51□□□□□ -2.17
MSL1YIR009W ECM14P38836 430 aa1.51□□□□□ -2.17
MSL1YIR009W EGD2P38879 174 aaKnown RBP1.51□□□□□ -2.17
MSL1YIR009W FIS1P40515 155 aa1.51□□□□□ -2.17
MSL1YIR009W FAR7P43592 221 aa1.51□□□□□ -2.17
MSL1YIR009W PIR5P46999 287 aa1.51□□□□□ -2.17
MSL1YIR009W SNO1Q03144 224 aa1.51□□□□□ -2.17
MSL1YIR009W FUS2Q05670 677 aa1.51□□□□□ -2.17
MSL1YIR009W ATG39Q06159 398 aa1.51□□□□□ -2.17
MSL1YIR009W EMP46Q12396 444 aa1.51□□□□□ -2.17
MSL1YIR009W TDA8Q6B2U8 126 aa1.51□□□□□ -2.17
MSL1YIR009W GSC2P40989 1895 aa1.51□□□□□ -2.17
MSL1YIR009W IKI3Q06706 1349 aaKnown RBP1.5□□□□□ -2.17
MSL1YIR009W QCR6P00127 147 aa1.5□□□□□ -2.17
MSL1YIR009W RPL25P04456 142 aaKnown RBP1.5□□□□□ -2.17
MSL1YIR009W YBR063CP38083 404 aa1.5□□□□□ -2.17
MSL1YIR009W COS8P38723 381 aa1.5□□□□□ -2.17
MSL1YIR009W SRP14P38985 146 aa1.5□□□□□ -2.17
MSL1YIR009W AST2P39945 430 aaKnown RBP1.5□□□□□ -2.17
MSL1YIR009W YER188WP40103 239 aa1.5□□□□□ -2.17
MSL1YIR009W POG1P40473 351 aa1.5□□□□□ -2.17
MSL1YIR009W PRM8P53174 237 aa1.5□□□□□ -2.17
MSL1YIR009W YIP3P53633 176 aa1.5□□□□□ -2.17
MSL1YIR009W YMR279CQ03263 540 aa1.5□□□□□ -2.17
MSL1YIR009W GRH1Q04410 372 aaKnown RBP1.5□□□□□ -2.17
MSL1YIR009W YDR114CQ04597 100 aa1.5□□□□□ -2.17
MSL1YIR009W GRX8Q05926 109 aa1.5□□□□□ -2.17
MSL1YIR009W NOC4Q06512 552 aaPredicted RBP1.5□□□□□ -2.17
MSL1YIR009W YNG1Q08465 219 aa1.5□□□□□ -2.17
MSL1YIR009W USB1Q12208 290 aaKnown RBP1.5□□□□□ -2.17
MSL1YIR009W YOR020W-AQ3E824 90 aa1.5□□□□□ -2.17
MSL1YIR009W HIS3P06633 220 aa1.49□□□□□ -2.17
MSL1YIR009W MRS1P07266 363 aa1.49□□□□□ -2.17
MSL1YIR009W PUT1P09368 476 aa1.49□□□□□ -2.17
MSL1YIR009W GCY1P14065 312 aaKnown RBP RIP-Chip data1.49□□□□□ -2.17not detected
MSL1YIR009W ATG22P25568 528 aa1.49□□□□□ -2.17
MSL1YIR009W TAH1P25638 111 aaPredicted RBP1.49□□□□□ -2.17
MSL1YIR009W VMA11P32842 164 aa1.49□□□□□ -2.17
MSL1YIR009W RPF1P38805 295 aaKnown RBP1.49□□□□□ -2.17
MSL1YIR009W YHR125WP38831 101 aa1.49□□□□□ -2.17
MSL1YIR009W LSM7P53905 115 aaKnown RBP1.49□□□□□ -2.17
MSL1YIR009W ABF2Q02486 183 aa1.49□□□□□ -2.17
MSL1YIR009W LPP1Q04396 274 aa1.49□□□□□ -2.17
MSL1YIR009W FCF1Q05498 189 aaPredicted RBP1.49□□□□□ -2.17
MSL1YIR009W YLR036CQ07986 203 aa1.49□□□□□ -2.17
MSL1YIR009W BRX1Q08235 291 aaKnown RBP1.49□□□□□ -2.17
MSL1YIR009W AGC1Q12482 902 aa1.49□□□□□ -2.17
MSL1YIR009W NOT5Q12514 560 aaPredicted RBP1.49□□□□□ -2.17
MSL1YIR009W LSO2Q3E772 92 aaKnown RBP1.49□□□□□ -2.17
MSL1YIR009W YDR034W-BQ6Q5X2 51 aa1.49□□□□□ -2.17
MSL1YIR009W SIR2P06700 562 aa1.48□□□□□ -2.17
MSL1YIR009W ADH3P07246 375 aaKnown RBP1.48□□□□□ -2.17
MSL1YIR009W SGA1P08019 549 aa1.48□□□□□ -2.17
MSL1YIR009W RPL35AP0CX84 120 aaKnown RBP1.48□□□□□ -2.17
MSL1YIR009W RPL35BP0CX85 120 aaKnown RBP1.48□□□□□ -2.17
MSL1YIR009W YKR032WP36127 104 aa1.48□□□□□ -2.17
MSL1YIR009W SHG1P38337 142 aa1.48□□□□□ -2.17
MSL1YIR009W YER084WP40057 128 aa1.48□□□□□ -2.17
MSL1YIR009W PDS1P40316 373 aaPredicted RBP1.48□□□□□ -2.17
MSL1YIR009W ARC15P40518 154 aaRIP-Chip data1.48□□□□□ -2.17not detected
MSL1YIR009W RPA43P46669 326 aa1.48□□□□□ -2.17
MSL1YIR009W BUD13P46947 266 aaPredicted RBP1.48□□□□□ -2.17
MSL1YIR009W OST2P46964 130 aa1.48□□□□□ -2.17
MSL1YIR009W SSU72P53538 206 aaPredicted RBP1.48□□□□□ -2.17
MSL1YIR009W NRK1P53915 240 aa1.48□□□□□ -2.17
MSL1YIR009W RSM10Q03201 203 aa1.48□□□□□ -2.17
MSL1YIR009W YML108WQ03759 105 aa1.48□□□□□ -2.17
MSL1YIR009W YPR195CQ06594 109 aa1.48□□□□□ -2.17
MSL1YIR009W RDS3Q06835 107 aaPredicted RBP1.48□□□□□ -2.17
MSL1YIR009W YOL024WQ08172 172 aa1.48□□□□□ -2.17
MSL1YIR009W YPL162CQ12042 273 aa1.48□□□□□ -2.17
MSL1YIR009W CDC7P06243 507 aa1.47□□□□□ -2.17
MSL1YIR009W TRR1P29509 319 aaKnown RBP1.47□□□□□ -2.17
MSL1YIR009W VPS51P36116 164 aa1.47□□□□□ -2.17
MSL1YIR009W SKG1P36169 355 aa1.47□□□□□ -2.17
MSL1YIR009W IRC22P40006 225 aa1.47□□□□□ -2.17
MSL1YIR009W YER076CP40049 302 aa1.47□□□□□ -2.17
MSL1YIR009W YKE4P40544 346 aa1.47□□□□□ -2.17
MSL1YIR009W MRPL49P40858 161 aaPredicted RBP1.47□□□□□ -2.17
MSL1YIR009W YJR141WP47172 347 aaPredicted RBP1.47□□□□□ -2.17
MSL1YIR009W RTC4P53850 401 aa1.47□□□□□ -2.17
MSL1YIR009W YET3Q07451 203 aa1.47□□□□□ -2.17
MSL1YIR009W YOR268CQ08734 132 aa1.47□□□□□ -2.17
MSL1YIR009W YFR032C-BQ8TGU2 87 aa1.47□□□□□ -2.17
MSL1YIR009W SAS5Q99314 248 aa1.47□□□□□ -2.17
MSL1YIR009W YLR419WQ06698 1435 aaKnown RBP1.47□□□□□ -2.17
MSL1YIR009W RRP5Q05022 1729 aaKnown RBP1.46□□□□□ -2.18
MSL1YIR009W Q0255P03881 472 aa1.46□□□□□ -2.18
MSL1YIR009W SEC4P07560 215 aaKnown RBP1.46□□□□□ -2.18
MSL1YIR009W YLR156WP0CE96 114 aa1.46□□□□□ -2.18
MSL1YIR009W YLR159WP0CE97 114 aa1.46□□□□□ -2.18
MSL1YIR009W YLR161WP0CE98 114 aa1.46□□□□□ -2.18
MSL1YIR009W TCA17P32613 152 aa1.46□□□□□ -2.18
MSL1YIR009W AGA2P32781 87 aa1.46□□□□□ -2.18
MSL1YIR009W UTP30P36144 274 aaKnown RBP1.46□□□□□ -2.18
MSL1YIR009W HMF1P40037 129 aaKnown RBP1.46□□□□□ -2.18
MSL1YIR009W DSK2P48510 373 aa1.46□□□□□ -2.18
Retrieved 100 of 5,963 RNA–protein pairs in 30.2 ms