RNA–Protein interactions for RNA: YDR049W

VMS1, Transcript of Component of a Cdc48p-complex involved in protein quality control, yeast

Gene VMS1, Length 1,899 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMS1	YDR049W	AVT1	P47082	602 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	IDP3	P53982	420 aa	Known RBP	4.86	□□□□□ -1.63
VMS1	YDR049W	YDR366C	P87287	132 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	NHP10	Q03435	203 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	YOR342C	Q12182	319 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	PRR2	Q12310	699 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	MPD1	Q12404	318 aa	Known RBP	4.86	□□□□□ -1.63
VMS1	YDR049W	PCL9	Q12477	304 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	YHR214C-E	Q8TGK0	99 aa		4.86	□□□□□ -1.63
VMS1	YDR049W	PDR18	P53756	1333 aa		4.85	□□□□□ -1.63
VMS1	YDR049W	PTM1	P32857	523 aa		4.85	□□□□□ -1.63
VMS1	YDR049W	MRPL15	P36523	253 aa		4.85	□□□□□ -1.63
VMS1	YDR049W	POP8	P38208	133 aa		4.85	□□□□□ -1.63
VMS1	YDR049W	MTC6	P38849	526 aa		4.85	□□□□□ -1.63
VMS1	YDR049W	YGR018C	P53211	109 aa		4.85	□□□□□ -1.63
VMS1	YDR049W	CGI121	Q03705	181 aa	Known RBP	4.85	□□□□□ -1.63
VMS1	YDR049W	PFA4	Q12006	378 aa		4.85	□□□□□ -1.63
VMS1	YDR049W	YBL112C	Q3E7Y4	105 aa		4.85	□□□□□ -1.63
VMS1	YDR049W	YMR316C-A	I2HB70	103 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	HEM4	P06174	275 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	YGL041W-A	P0C5N3	154 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	SPO13	P23624	291 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	ERG4	P25340	473 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	AGA1	P32323	725 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	MBA1	P38300	278 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	LSM12	P38828	187 aa	Known RBP	4.84	□□□□□ -1.63
VMS1	YDR049W	HEM14	P40012	539 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	AIF1	P52923	378 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	MDM34	P53083	459 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	YGR039W	P53225	103 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	YGR219W	P53307	113 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	RNH201	P53942	307 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	DIG2	Q03373	323 aa	Known RBP	4.84	□□□□□ -1.63
VMS1	YDR049W	HRI1	Q05905	244 aa	Known RBP	4.84	□□□□□ -1.63
VMS1	YDR049W	SYC1	Q08553	188 aa	Predicted RBP	4.84	□□□□□ -1.63
VMS1	YDR049W	IML1	P47170	1584 aa		4.84	□□□□□ -1.63
VMS1	YDR049W	RPL30	P14120	105 aa	Known RBP	4.83	□□□□□ -1.64
VMS1	YDR049W	GPX1	P36014	167 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	YPT53	P36019	220 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	MOB1	P40484	314 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	GVP36	P40531	326 aa	Known RBP	4.83	□□□□□ -1.64
VMS1	YDR049W	GLR1	P41921	483 aa	Known RBP	4.83	□□□□□ -1.64
VMS1	YDR049W	YFR054C	P43622	192 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	YPR114W	Q06107	315 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	YLR118C	Q12354	227 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	PSK1	P31374	1356 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	MBF1	O14467	151 aa	Known RBP	4.83	□□□□□ -1.64
VMS1	YDR049W	ADH1	P00330	348 aa	Known RBP	4.83	□□□□□ -1.64
VMS1	YDR049W	GLC7	P32598	312 aa	Known RBP	4.83	□□□□□ -1.64
VMS1	YDR049W	YHL026C	P38740	315 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	DLS1	P40366	167 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	CFD1	P40558	293 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	OST1	P41543	476 aa	Known RBP	4.83	□□□□□ -1.64
VMS1	YDR049W	TPC1	P53257	314 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	CAB4	P53332	305 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	ERV29	P53337	310 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	YMR181C	Q03231	154 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	FCY1	Q12178	158 aa		4.83	□□□□□ -1.64
VMS1	YDR049W	YHR139C-A	O13536	103 aa		4.82	□□□□□ -1.64
VMS1	YDR049W	SEC59	P20048	519 aa		4.82	□□□□□ -1.64
VMS1	YDR049W	PGA1	P53896	198 aa		4.82	□□□□□ -1.64
VMS1	YDR049W	AIM11	P87275	137 aa		4.82	□□□□□ -1.64
VMS1	YDR049W	MRX8	Q05473	314 aa		4.82	□□□□□ -1.64
VMS1	YDR049W	AIM39	Q08223	395 aa		4.82	□□□□□ -1.64
VMS1	YDR049W	YPL245W	Q12179	454 aa	Known RBP	4.82	□□□□□ -1.64
VMS1	YDR049W	YLR122C	Q12312	125 aa		4.82	□□□□□ -1.64
VMS1	YDR049W	NUP192	P47054	1683 aa		4.82	□□□□□ -1.64
VMS1	YDR049W	DNF3	Q12674	1656 aa		4.82	□□□□□ -1.64
VMS1	YDR049W	KRE5	P22023	1365 aa		4.82	□□□□□ -1.64
VMS1	YDR049W	YOR062C	P36025	268 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	TRS20	P38334	175 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	RRT5	P43607	289 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	YGR050C	P53231	118 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	YNL010W	P53981	241 aa	Known RBP	4.81	□□□□□ -1.64
VMS1	YDR049W	VPS71	Q03433	280 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	THI74	Q04083	370 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	YLR177W	Q06251	628 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	ROM2	P51862	1356 aa	Known RBP	4.81	□□□□□ -1.64
VMS1	YDR049W	NUP188	P52593	1655 aa	Known RBP	4.81	□□□□□ -1.64
VMS1	YDR049W	FMP49	A0A023PZB3	126 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	PIS1	P06197	220 aa	Known RBP	4.81	□□□□□ -1.64
VMS1	YDR049W	RPS14A	P06367	137 aa	Known RBP	4.81	□□□□□ -1.64
VMS1	YDR049W	STE7	P06784	515 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	AQY1	P0CD91	305 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	COQ2	P32378	372 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	PEX2	P32800	271 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	RPF1	P38805	295 aa	Known RBP	4.81	□□□□□ -1.64
VMS1	YDR049W	RPS14B	P39516	138 aa	Known RBP	4.81	□□□□□ -1.64
VMS1	YDR049W	YNL234W	P53857	426 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	GOT1	Q03554	138 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	INP1	Q03694	420 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	BSP1	Q06604	576 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	SNX3	Q08826	162 aa	Known RBP	4.81	□□□□□ -1.64
VMS1	YDR049W	FCF2	Q12035	217 aa	Predicted RBP	4.81	□□□□□ -1.64
VMS1	YDR049W	YDL180W	Q12301	547 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	TSC3	Q3E790	80 aa		4.81	□□□□□ -1.64
VMS1	YDR049W	VAR1	P02381	398 aa		4.8	□□□□□ -1.64
VMS1	YDR049W	MAG1	P22134	296 aa	Known RBP	4.8	□□□□□ -1.64
VMS1	YDR049W	MIR1	P23641	311 aa	Known RBP	4.8	□□□□□ -1.64
VMS1	YDR049W	OAR1	P35731	278 aa		4.8	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 22.6 ms