RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ANKRD54Q6NXT1 300 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.97□□□□□ -0.81
VPS35-206ENST00000565228 C15orf39Q6ZRI6 1047 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 STXBP4Q6ZWJ1 553 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 LIMS2Q7Z4I7 341 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 CEP57Q86XR8 500 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 PALB2Q86YC2 1186 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 SPDYE1Q8NFV5 336 aaPredicted RBP9.97□□□□□ -0.81
VPS35-206ENST00000565228 OR10T2Q8NGX3 314 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 HLA-CQ95604 372 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 SENP8Q96LD8 212 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 UROC1Q96N76 676 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 CGRRF1Q99675 332 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 TTPALQ9BTX7 342 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 XYLT2Q9H1B5 865 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 SLC38A7Q9NVC3 462 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 MTRRQ9UBK8 725 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 SF3B1O75533 1304 aaKnown RBP eCLIP9.97□□□□□ -0.81
VPS35-206ENST00000565228 DENND4AQ7Z401 1863 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 WDFY4Q6ZS81 3184 aa9.97□□□□□ -0.81
VPS35-206ENST00000565228 WDR27A2RRH5 827 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 EXOC3O60645 756 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 RFPL2O75678 378 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 IL18RAPO95256 599 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 SEC24AO95486 1093 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 URODP06132 367 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 DLATP10515 647 aaKnown RBP9.96□□□□□ -0.82
VPS35-206ENST00000565228 NR2F2P24468 414 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 MCM4P33991 863 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 CA8P35219 290 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 SNRPFP62306 86 aaKnown RBP9.96□□□□□ -0.82
VPS35-206ENST00000565228 PSMD5Q16401 504 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 LEXMQ3ZCV2 418 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 PDE12Q6L8Q7 609 aaKnown RBP9.96□□□□□ -0.82
VPS35-206ENST00000565228 RBM43Q6ZSC3 357 aaKnown RBP9.96□□□□□ -0.82
VPS35-206ENST00000565228 HS2ST1Q7LGA3 356 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 TRAPPC11Q7Z392 1133 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 LRRTM3Q86VH5 581 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 CSGALNACT2Q8N6G5 542 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 TTC9BQ8N6N2 239 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 BEST2Q8NFU1 509 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 ZNF707Q96C28 371 aaPredicted RBP9.96□□□□□ -0.82
VPS35-206ENST00000565228 ASB2Q96Q27 587 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 LPIN3Q9BQK8 851 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 SDCBP2Q9H190 292 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 MRPL17Q9NRX2 175 aaKnown RBP9.96□□□□□ -0.82
VPS35-206ENST00000565228 TMLHEQ9NVH6 421 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 TMEM63CQ9P1W3 806 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 FNIP2Q9P278 1114 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 THEGQ9P2T0 379 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 FBXL5Q9UKA1 691 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 PCDHB8Q9UN66 801 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 AGAP1Q9UPQ3 857 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 CTNND2Q9UQB3 1225 aa9.96□□□□□ -0.82
VPS35-206ENST00000565228 TULP1O00294 542 aaPredicted RBP9.95□□□□□ -0.82
VPS35-206ENST00000565228 KIAA0391O15091 583 aaKnown RBP9.95□□□□□ -0.82
VPS35-206ENST00000565228 MBTPS2O43462 519 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 SMC2O95347 1197 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 CCNE1P24864 410 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 KLRC2P26717 231 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 OR1D2P34982 312 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 MYL6P60660 151 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 ROR1Q01973 937 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 ADAM9Q13443 819 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 EDRF1Q3B7T1 1238 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 DPCR1Q3MIW9 517 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 WSCD1Q658N2 575 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 CEP135Q66GS9 1140 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 KLHL10Q6JEL2 608 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 EP400NLQ6ZTU2 488 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 IRF2BP1Q8IU81 584 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 WDR49Q8IV35 697 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 SMRP1Q8NCR6 262 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 KBTBD7Q8WVZ9 684 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 NELFBQ8WX92 580 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 SUSD6Q92537 303 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 SEMA4DQ92854 862 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 KHSRPQ92945 711 aaKnown RBP eCLIP9.95□□□□□ -0.82
VPS35-206ENST00000565228 PKMYT1Q99640 499 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 CGNQ9P2M7 1197 aaKnown RBP9.95□□□□□ -0.82
VPS35-206ENST00000565228 L1RE1Q9UN81 338 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 POLIQ9UNA4 740 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 CDY1Q9Y6F8 540 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 PTPRDP23468 1912 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 MYO10Q9HD67 2058 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 NCOR1O75376 2440 aa9.95□□□□□ -0.82
VPS35-206ENST00000565228 SYN3O14994 580 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 CALUO43852 315 aaPredicted RBP9.94□□□□□ -0.82
VPS35-206ENST00000565228 ABLIM3O94929 683 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 OAZ2O95190 189 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 PAPLNO95428 1278 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 CYP11A1P05108 521 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 NDUFV1P49821 464 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 RAB33AQ14088 237 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 MYBPC2Q14324 1141 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 SOWAHAQ2M3V2 549 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 ZACNQ401N2 412 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 SPOPLQ6IQ16 392 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 SLC8B1Q6J4K2 584 aa9.94□□□□□ -0.82
VPS35-206ENST00000565228 RNF19BQ6ZMZ0 732 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 150 ms