RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 FAM86B1E9PN63 330 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 MSH4O15457 936 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 ECE2O60344 883 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 PFDN1O60925 122 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 FAM86B2P0C5J1 330 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 DSG1Q02413 1049 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 PPP3CAQ08209 521 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 MAP7Q14244 749 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 FASTKD3Q14CZ7 662 aaKnown RBP13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 ZNF568Q3ZCX4 644 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 ZNF720Q7Z2F6 126 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 VTI1AQ96AJ9 217 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 HAUS1Q96CS2 278 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 FNBP1Q96RU3 617 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 PSMC3IPQ9P2W1 217 aaPredicted RBP13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 ZNF212Q9UDV6 495 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 LNPEPQ9UIQ6 1025 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 ATF5Q9Y2D1 282 aaPredicted RBP13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 IKBKGQ9Y6K9 419 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 TRAFD1O14545 582 aaPredicted RBP13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 PRPF4O43172 522 aaKnown RBP eCLIP13.57□□□□□ -0.249e-7■■■□□ 15.4
SFSWAP-209ENST00000540469 ENO1P06733 434 aaKnown RBP13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 SPIRE1Q08AE8 756 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 MAPK6Q16659 721 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 SLC51AQ86UW1 340 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 LRRC6Q86X45 466 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 CCDC110Q8TBZ0 833 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 SLCO2A1Q92959 643 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 NYXQ9GZU5 481 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 IQCGQ9H095 443 aaKnown RBP13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 MANSC1Q9H8J5 431 aa13.57□□□□□ -0.24
SFSWAP-209ENST00000540469 C2orf71A6NGG8 1288 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 CALCAP01258 141 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 ZSCAN5DPP0CG00 497 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 ARSEP51690 589 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 AP3B2Q13367 1082 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 CNPY1Q3B7I2 92 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 C1orf146Q5VVC0 180 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 PSPC1Q8WXF1 523 aaKnown RBP13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 PTPRN2Q92932 1015 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 TMEM120AQ9BXJ8 343 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 OSBPL8Q9BZF1 889 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 MROH7Q68CQ1 1323 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 C6orf229H3BNL8 230 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 TAL1P17542 331 aaPredicted RBP13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 MUTP22033 750 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 FMO1Q01740 532 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 KDSRQ06136 332 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 CCDC174Q6PII3 467 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 CLEC4GQ6UXB4 293 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 TPTE2Q6XPS3 522 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 RINLQ6ZS11 566 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 HIC2Q96JB3 615 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 HERPUD2Q9BSE4 406 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 ASCC2Q9H1I8 757 aaPredicted RBP13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 SERPINB13Q9UIV8 391 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 PI4K2BG5E9Z4 385 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 PIK3CDO00329 1044 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 CYP1A2P05177 515 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 CYP11B1P15538 503 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 UBXN2AP68543 259 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 PLEKHG4Q58EX7 1191 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 CENPUQ71F23 418 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 ZCCHC9Q8N567 271 aaKnown RBP13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 KLHL23Q8NBE8 558 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 TCP10LQ8TDR4 215 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 DENND1AQ8TEH3 1009 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 TUBGCP5Q96RT8 1024 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 MAK16Q9BXY0 300 aaKnown RBP13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 OCEL1Q9H607 264 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 TAS2R1Q9NYW7 299 aa13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.56□□□□□ -0.24
SFSWAP-209ENST00000540469 TBX3O15119 743 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 AMPD1P23109 780 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 AP2B1P63010 937 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 CENPCQ03188 943 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 DEUP1Q05D60 604 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 SLC25A41Q8N5S1 370 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 THTPAQ9BU02 230 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 PKD2L1Q9P0L9 805 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 PPARGC1AQ9UBK2 798 aaKnown RBP13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 ARHGAP42A6NI28 874 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 DDX39AO00148 427 aaKnown RBP13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 GAS7O60861 476 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 UFL1O94874 794 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 LMNB2Q03252 620 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 CPA5Q8WXQ8 436 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 CBWD1Q9BRT8 395 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 ATAD5Q96QE3 1844 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 MTA2O94776 668 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 RTP1P59025 263 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 GSTA3Q16772 222 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 LLGL2Q6P1M3 1020 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 TTC7BQ86TV6 843 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 SESTD1Q86VW0 696 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 RASSF3Q86WH2 238 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 KBTBD2Q8IY47 623 aa13.55□□□□□ -0.24
SFSWAP-209ENST00000540469 DHX38Q92620 1227 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms