RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 SLC15A5A6NIM6 579 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 GOLGA8AA7E2F4 631 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 GOLGA8BA8MQT2 603 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 KLRF2D3W0D1 207 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 H3BRJ5 948 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 ATP2A1O14983 1001 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 TBX1O43435 398 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 ATP8B1O43520 1251 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 CYTH3O43739 400 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 MAFKO60675 156 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 PLA2G6O60733 806 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 DNAJA2O60884 412 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 PPP1R11O60927 126 aaPredicted RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 DTNBO60941 627 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 SASH3O75995 380 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 SLC25A27O95847 323 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 HMGCRP04035 888 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 SOD2P04179 222 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 ICAM1P05362 532 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 TPM3P06753 285 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 EPHX1P07099 455 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 FCER1AP12319 257 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 PAX7P23759 505 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 GALNSP34059 522 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 GPC1P35052 558 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 NT5C2P49902 561 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 OAZ1P54368 228 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 PRMT2P55345 433 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 SESN3P58005 492 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 NUCB2P80303 420 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 SARNPP82979 210 aaKnown RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 TSPY1Q01534 308 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 CNTN2Q02246 1040 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 TRAF1Q13077 416 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 AP3B2Q13367 1082 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 BLMHQ13867 455 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 KRT32Q14532 448 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 ACAP2Q15057 778 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 CLUL1Q15846 466 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 DBN1Q16643 649 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 BBS9Q3SYG4 887 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 TTC31Q49AM3 519 aaPredicted RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 SLC45A4Q5BKX6 768 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 DGKKQ5KSL6 1271 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 APOA5Q6Q788 366 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 BLOC1S2Q6QNY1 142 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 TMCO3Q6UWJ1 677 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 SLC30A10Q6XR72 485 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 SYDE1Q6ZW31 735 aaPredicted RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 PDZD4Q76G19 769 aaPredicted RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 DHX32Q7L7V1 743 aaKnown RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 DPP9Q86TI2 863 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 DDX53Q86TM3 631 aaKnown RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 FLCNQ8NFG4 579 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 FBXO18Q8NFZ0 1043 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 CTCFLQ8NI51 663 aaPredicted RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 USP13Q92995 863 aaPredicted RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 LENG1Q96BZ8 264 aaPredicted RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 CCDC34Q96HJ3 373 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 FGD4Q96M96 766 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 ZMAT2Q96NC0 199 aaKnown RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 PNMA5Q96PV4 448 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 PIGSQ96S52 555 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 SLX1AQ9BQ83 275 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 MMTAG2Q9BU76 263 aaKnown RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 MROH8Q9H579 483 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 ACAD9Q9H845 621 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 JMJD4Q9H9V9 463 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 CERS4Q9HA82 394 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 VPS45Q9NRW7 570 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 THG1LQ9NWX6 298 aaKnown RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 IFT80Q9P2H3 777 aaPredicted RBP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 TMCC3Q9ULS5 477 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 SNX5Q9Y5X3 404 aa4.98□□□□□ -1.61
SF3B1-202ENST00000409915 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.98□□□□□ -1.61
SF3B1-202ENST00000409915 ASTN1O14525 1302 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 A0A087WV62 115 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 PTPDC1A2A3K4 754 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 GTPBP10A4D1E9 387 aaKnown RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 FAM227AF5H4B4 570 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 H0YHG0 523 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 EIF3FO00303 357 aaPredicted RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 AREL1O15033 823 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 ZBTB5O15062 677 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 ZBTB43O43298 467 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 DLX3O60479 287 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CAPNS1P04632 268 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 TP53P04637 393 aaPredicted RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 HOXC6P09630 235 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CCL5P13501 91 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 PTGS1P23219 599 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CALML3P27482 149 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 ARNTP27540 789 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 PSMA5P28066 241 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CCND3P30281 292 aaPredicted RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 ELF1P32519 619 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 CTNNA1P35221 906 aaKnown RBP4.97□□□□□ -1.61
SF3B1-202ENST00000409915 KRT9P35527 623 aa4.97□□□□□ -1.61
SF3B1-202ENST00000409915 LIFRP42702 1097 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms