RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 SMAPO00193 183 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 KRT34O76011 436 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 INPP5AQ14642 412 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 ITPRIPL1Q6GPH6 555 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 PGBD4Q96DM1 585 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 SEMA4AQ9H3S1 761 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 RHBDL2Q9NX52 303 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 A0A087X0B3 334 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 FOXN3O00409 490 aaPredicted RBP16.71■□□□□ 0.27
COL17A1-202ENST00000369733 AKAP10O43572 662 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 ATP6V1B1P15313 513 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 ZNF34Q8IZ26 560 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 ATP8B4Q8TF62 1192 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 MRPL1Q9BYD6 325 aaKnown RBP16.71■□□□□ 0.27
COL17A1-202ENST00000369733 JMJD4Q9H9V9 463 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 TMEM8AQ9HCN3 771 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 TRAPPC3O43617 180 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 ATP9BO43861 1147 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 NPR1P16066 1061 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 PTENP60484 403 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 PID1Q7Z2X4 250 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 MTDHQ86UE4 582 aaKnown RBP16.71■□□□□ 0.27
COL17A1-202ENST00000369733 CDC26Q8NHZ8 85 aa16.71■□□□□ 0.27
COL17A1-202ENST00000369733 SNX2O60749 519 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 STXBP2Q15833 593 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 ACAD10Q6JQN1 1059 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 NSUN6Q8TEA1 469 aaKnown RBP16.7■□□□□ 0.26
COL17A1-202ENST00000369733 ANKRD27Q96NW4 1050 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 ASCC2Q9H1I8 757 aaPredicted RBP16.7■□□□□ 0.26
COL17A1-202ENST00000369733 EML4Q9HC35 981 aaKnown RBP16.7■□□□□ 0.26
COL17A1-202ENST00000369733 CNOT7Q9UIV1 285 aaKnown RBP16.7■□□□□ 0.26
COL17A1-202ENST00000369733 ADGRB2O60241 1585 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 XPO1O14980 1071 aaKnown RBP16.7■□□□□ 0.26
COL17A1-202ENST00000369733 ACOT2P49753 483 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 COPAP53621 1224 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 PKN1Q16512 942 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 KRT27Q7Z3Y8 459 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 RNF139Q8WU17 664 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 PSPC1Q8WXF1 523 aaKnown RBP16.7■□□□□ 0.26
COL17A1-202ENST00000369733 PCDHA10Q9Y5I2 948 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 SNUPNO95149 360 aaKnown RBP16.7■□□□□ 0.26
COL17A1-202ENST00000369733 MEA1Q16626 185 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 MSL3Q8N5Y2 521 aaKnown RBP16.7■□□□□ 0.26
COL17A1-202ENST00000369733 FAM193BQ96PV7 902 aaPredicted RBP16.7■□□□□ 0.26
COL17A1-202ENST00000369733 IL1RAPL1Q9NZN1 696 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 CST8O60676 142 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 PTPN4P29074 926 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 NFX1Q12986 1120 aaKnown RBP16.7■□□□□ 0.26
COL17A1-202ENST00000369733 DNAAF5Q86Y56 855 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 DDIASQ8IXT1 998 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 NDUFAF2Q8N183 169 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 C20orf96Q9NUD7 363 aaPredicted RBP16.7■□□□□ 0.26
COL17A1-202ENST00000369733 INTS13Q9NVM9 706 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 ARHGAP26Q9UNA1 814 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 ABCA9Q8IUA7 1624 aa16.7■□□□□ 0.26
COL17A1-202ENST00000369733 AGPAT3Q9NRZ7 376 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 AIPL1Q9NZN9 384 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 EFHC2Q5JST6 749 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 SPDYE1Q8NFV5 336 aaPredicted RBP16.69■□□□□ 0.26
COL17A1-202ENST00000369733 PAK5Q9P286 719 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 ZNF229Q9UJW7 825 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 GRID1Q9ULK0 1009 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 STAP1Q9ULZ2 295 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 DTNAQ9Y4J8 743 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 CEP170BQ9Y4F5 1589 aaPredicted RBP16.69■□□□□ 0.26
COL17A1-202ENST00000369733 KIAA0391O15091 583 aaKnown RBP16.69■□□□□ 0.26
COL17A1-202ENST00000369733 RIPK2O43353 540 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 SGPL1O95470 568 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 TCN1P20061 433 aaPredicted RBP16.69■□□□□ 0.26
COL17A1-202ENST00000369733 NEK2P51955 445 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 YTHDF3Q7Z739 585 aaKnown RBP16.69■□□□□ 0.26
COL17A1-202ENST00000369733 LDHDQ86WU2 507 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 ZNF677Q86XU0 584 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 SPATA18Q8TC71 538 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 CNBD2Q96M20 576 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 ADNPQ9H2P0 1102 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 ATP8B3O60423 1300 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 TRIM49D1C9J1S8 452 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 CES2O00748 559 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 ATP9AO75110 1047 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 ELF3P78545 371 aaPredicted RBP16.69■□□□□ 0.26
COL17A1-202ENST00000369733 SEC23AQ15436 765 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 SCUBE1Q8IWY4 988 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 FEZF2Q8TBJ5 459 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 SNRNP27Q8WVK2 155 aaKnown RBP16.69■□□□□ 0.26
COL17A1-202ENST00000369733 WDR35Q9P2L0 1181 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 SPDYE2BA6NHP3 402 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 SPDYE6P0CI01 402 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 CALB2P22676 271 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 LAMB3Q13751 1172 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 EAPPQ56P03 285 aaPredicted RBP16.69■□□□□ 0.26
COL17A1-202ENST00000369733 C2orf40Q9H1Z8 148 aa16.69■□□□□ 0.26
COL17A1-202ENST00000369733 FAM205AQ6ZU69 1335 aa16.68■□□□□ 0.26
COL17A1-202ENST00000369733 PDE2AO00408 941 aaPredicted RBP16.68■□□□□ 0.26
COL17A1-202ENST00000369733 FOXD4Q12950 439 aaPredicted RBP16.68■□□□□ 0.26
COL17A1-202ENST00000369733 EARS2Q5JPH6 523 aaKnown RBP16.68■□□□□ 0.26
COL17A1-202ENST00000369733 FAM182BQ5T319 152 aa16.68■□□□□ 0.26
COL17A1-202ENST00000369733 RMDN2Q96LZ7 410 aa16.68■□□□□ 0.26
COL17A1-202ENST00000369733 RNF146Q9NTX7 359 aa16.68■□□□□ 0.26
COL17A1-202ENST00000369733 NRXN1Q9ULB1 1477 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms