RNA–Protein interactions for RNA: ENST00000640653.1

VEGFA-232, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-232ENST00000640653 PPP1R15AO75807 674 aaPredicted RBP38.03■■■■□ 3.68
VEGFA-232ENST00000640653 SCAF1Q9H7N4 1312 aaKnown RBP38.03■■■■□ 3.68
VEGFA-232ENST00000640653 SLC26A8Q96RN1 970 aa38.02■■■■□ 3.68
VEGFA-232ENST00000640653 PIP4K2BP78356 416 aa38.01■■■■□ 3.68
VEGFA-232ENST00000640653 ABCF1Q8NE71 845 aaKnown RBP eCLIP38.01■■■■□ 3.68
VEGFA-232ENST00000640653 PLEKHG1Q9ULL1 1385 aa38■■■■□ 3.67
VEGFA-232ENST00000640653 SPHKAPQ2M3C7 1700 aa37.97■■■■□ 3.67
VEGFA-232ENST00000640653 KCNA6P17658 529 aa37.96■■■■□ 3.67
VEGFA-232ENST00000640653 TRIM52Q96A61 297 aa37.93■■■■□ 3.66
VEGFA-232ENST00000640653 ALKQ9UM73 1620 aa37.9■■■■□ 3.66
VEGFA-232ENST00000640653 SENP3Q9H4L4 574 aaPredicted RBP37.89■■■■□ 3.66
VEGFA-232ENST00000640653 NWD1Q149M9 1564 aa37.86■■■■□ 3.65
VEGFA-232ENST00000640653 NKTRP30414 1462 aaKnown RBP37.85■■■■□ 3.65
VEGFA-232ENST00000640653 NUTM2DQ5VT03 806 aaPredicted RBP37.85■■■■□ 3.65
VEGFA-232ENST00000640653 TRPM2O94759 1503 aa37.84■■■■□ 3.65
VEGFA-232ENST00000640653 TBX22Q9Y458 520 aa37.84■■■■□ 3.65
VEGFA-232ENST00000640653 TMEM94Q12767 1356 aa37.83■■■■□ 3.65
VEGFA-232ENST00000640653 HSPA1LP34931 641 aa37.83■■■■□ 3.65
VEGFA-232ENST00000640653 PROSER2Q86WR7 435 aaPredicted RBP37.83■■■■□ 3.65
VEGFA-232ENST00000640653 XIRP1Q702N8 1843 aaKnown RBP37.82■■■■□ 3.65
VEGFA-232ENST00000640653 DISP3Q9P2K9 1392 aa37.81■■■■□ 3.64
VEGFA-232ENST00000640653 SLC4A1APQ9BWU0 796 aaKnown RBP37.8■■■■□ 3.64
VEGFA-232ENST00000640653 ZNF326Q5BKZ1 582 aaKnown RBP37.79■■■■□ 3.64
VEGFA-232ENST00000640653 DIP2AQ14689 1571 aa37.79■■■■□ 3.64
VEGFA-232ENST00000640653 CLTCL1P53675 1640 aa37.78■■■■□ 3.64
VEGFA-232ENST00000640653 ADAMTS13Q76LX8 1427 aa37.77■■■■□ 3.64
VEGFA-232ENST00000640653 CHD2O14647 1828 aaKnown RBP37.74■■■■□ 3.63
VEGFA-232ENST00000640653 PIK3R4Q99570 1358 aa37.72■■■■□ 3.63
VEGFA-232ENST00000640653 RBM33Q96EV2 1170 aaKnown RBP37.71■■■■□ 3.63
VEGFA-232ENST00000640653 KIF1BO60333 1816 aa37.68■■■■□ 3.62
VEGFA-232ENST00000640653 MSH6P52701 1360 aa37.66■■■■□ 3.62
VEGFA-232ENST00000640653 SETBP1Q9Y6X0 1596 aa37.64■■■■□ 3.62
VEGFA-232ENST00000640653 NEXMIFQ5QGS0 1516 aa37.63■■■■□ 3.61
VEGFA-232ENST00000640653 ACIN1Q9UKV3 1341 aaKnown RBP37.61■■■■□ 3.61
VEGFA-232ENST00000640653 NCOA3Q9Y6Q9 1424 aa37.61■■■■□ 3.61
VEGFA-232ENST00000640653 NRXN3Q9Y4C0 1643 aa37.6■■■■□ 3.61
VEGFA-232ENST00000640653 FAM135BQ49AJ0 1406 aa37.6■■■■□ 3.61
VEGFA-232ENST00000640653 AMOTL2Q9Y2J4 779 aa37.57■■■■□ 3.6
VEGFA-232ENST00000640653 SETD5Q9C0A6 1442 aa37.56■■■■□ 3.6
VEGFA-232ENST00000640653 FOXD1Q16676 465 aa37.56■■■■□ 3.6
VEGFA-232ENST00000640653 MPHOSPH9Q99550 1183 aa37.56■■■■□ 3.6
VEGFA-232ENST00000640653 PTPRUQ92729 1446 aa37.54■■■■□ 3.6
VEGFA-232ENST00000640653 C14orf37Q86TY3 774 aa37.54■■■■□ 3.6
VEGFA-232ENST00000640653 RPGRIP1LQ68CZ1 1315 aa37.53■■■■□ 3.6
VEGFA-232ENST00000640653 VGFO15240 615 aaPredicted RBP37.52■■■■□ 3.6
VEGFA-232ENST00000640653 CCDC144AA2RUR9 1427 aa37.5■■■■□ 3.59
VEGFA-232ENST00000640653 MED1Q15648 1581 aaPredicted RBP37.48■■■■□ 3.59
VEGFA-232ENST00000640653 SLAIN2Q9P270 581 aa37.48■■■■□ 3.59
VEGFA-232ENST00000640653 ROBO1Q9Y6N7 1651 aa37.47■■■■□ 3.59
VEGFA-232ENST00000640653 METP08581 1390 aa37.47■■■■□ 3.59
VEGFA-232ENST00000640653 XRN1Q8IZH2 1706 aaKnown RBP37.46■■■■□ 3.59
VEGFA-232ENST00000640653 C19orf44Q9H6X5 657 aa37.45■■■■□ 3.59
VEGFA-232ENST00000640653 ILDR2Q71H61 639 aa37.44■■■■□ 3.58
VEGFA-232ENST00000640653 CADPS2Q86UW7 1296 aa37.43■■■■□ 3.58
VEGFA-232ENST00000640653 ATF3P18847 181 aa37.41■■■■□ 3.58
VEGFA-232ENST00000640653 RAB3GAP2Q9H2M9 1393 aa37.41■■■■□ 3.58
VEGFA-232ENST00000640653 SIPA1L2Q9P2F8 1722 aaPredicted RBP37.39■■■■□ 3.58
VEGFA-232ENST00000640653 PPLO60437 1756 aa37.38■■■■□ 3.57
VEGFA-232ENST00000640653 SPATA31E1Q6ZUB1 1445 aa37.34■■■■□ 3.57
VEGFA-232ENST00000640653 DCCP43146 1447 aa37.33■■■■□ 3.57
VEGFA-232ENST00000640653 RGL3Q3MIN7 710 aa37.32■■■■□ 3.56
VEGFA-232ENST00000640653 SETD1AO15047 1707 aaKnown RBP37.3■■■■□ 3.56
VEGFA-232ENST00000640653 PHF23Q9BUL5 403 aaPredicted RBP37.29■■■■□ 3.56
VEGFA-232ENST00000640653 ANKRD30BQ9BXX2 1392 aa37.29■■■■□ 3.56
VEGFA-232ENST00000640653 PTCH1Q13635 1447 aa37.26■■■■□ 3.55
VEGFA-232ENST00000640653 PHLPP1O60346 1717 aa37.25■■■■□ 3.55
VEGFA-232ENST00000640653 ADGRL3Q9HAR2 1447 aa37.24■■■■□ 3.55
VEGFA-232ENST00000640653 ADGRF5Q8IZF2 1346 aa37.23■■■■□ 3.55
VEGFA-232ENST00000640653 PRAG1Q86YV5 1406 aa37.21■■■■□ 3.55
VEGFA-232ENST00000640653 IFT172Q9UG01 1749 aa37.21■■■■□ 3.55
VEGFA-232ENST00000640653 HRCP23327 699 aa37.19■■■■□ 3.54
VEGFA-232ENST00000640653 SOCS7O14512 581 aa37.18■■■■□ 3.54
VEGFA-232ENST00000640653 ROBO2Q9HCK4 1378 aa37.17■■■■□ 3.54
VEGFA-232ENST00000640653 MST1RQ04912 1400 aa37.16■■■■□ 3.54
VEGFA-232ENST00000640653 NALCNQ8IZF0 1738 aa37.16■■■■□ 3.54
VEGFA-232ENST00000640653 JCADQ9P266 1359 aa37.16■■■■□ 3.54
VEGFA-232ENST00000640653 AHDC1Q5TGY3 1603 aaPredicted RBP37.15■■■■□ 3.54
VEGFA-232ENST00000640653 BRINP3Q76B58 766 aa37.15■■■■□ 3.54
VEGFA-232ENST00000640653 COL16A1Q07092 1604 aaPredicted RBP37.14■■■■□ 3.54
VEGFA-232ENST00000640653 PIK3C2GO75747 1445 aa37.11■■■■□ 3.53
VEGFA-232ENST00000640653 ASXL1Q8IXJ9 1541 aa37.09■■■■□ 3.53
VEGFA-232ENST00000640653 MYOM2P54296 1465 aa37.04■■■■□ 3.52
VEGFA-232ENST00000640653 LRPPRCP42704 1394 aaKnown RBP37.04■■■■□ 3.52
VEGFA-232ENST00000640653 TECPR2O15040 1411 aa37.02■■■■□ 3.52
VEGFA-232ENST00000640653 STK26Q9P289 416 aa37.02■■■■□ 3.52
VEGFA-232ENST00000640653 NRXN1Q9ULB1 1477 aa37.01■■■■□ 3.51
VEGFA-232ENST00000640653 TMEM132EQ6IEE7 984 aa37■■■■□ 3.51
VEGFA-232ENST00000640653 ABCC11Q96J66 1382 aa37■■■■□ 3.51
VEGFA-232ENST00000640653 C1orf167Q5SNV9 1468 aa37■■■■□ 3.51
VEGFA-232ENST00000640653 SPATA31A6Q5VVP1 1343 aa36.99■■■■□ 3.51
VEGFA-232ENST00000640653 NHSL1Q5SYE7 1610 aa36.97■■■■□ 3.51
VEGFA-232ENST00000640653 C14orf93Q9H972 538 aaKnown RBP36.97■■■■□ 3.51
VEGFA-232ENST00000640653 RGS17Q9UGC6 210 aaPredicted RBP36.97■■■■□ 3.51
VEGFA-232ENST00000640653 KNDC1Q76NI1 1749 aa36.96■■■■□ 3.51
VEGFA-232ENST00000640653 YTHDC2Q9H6S0 1430 aaKnown RBP36.95■■■■□ 3.51
VEGFA-232ENST00000640653 SHPRHQ149N8 1683 aa36.95■■■■□ 3.51
VEGFA-232ENST00000640653 LAMC1P11047 1609 aa36.95■■■■□ 3.51
VEGFA-232ENST00000640653 CDC42BPGQ6DT37 1551 aa36.91■■■■□ 3.5
VEGFA-232ENST00000640653 CFAP70Q5T0N1 1121 aa36.91■■■■□ 3.5
VEGFA-232ENST00000640653 WAPLQ7Z5K2 1190 aa36.91■■■■□ 3.5
Retrieved 100 of 20,778 RNA–protein pairs in 205 ms