RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.26□□□□□ -0.61
CD44-239ENST00000639002 PHOX2BQ99453 314 aa11.25□□□□□ -0.61
CD44-239ENST00000639002 MTRQ99707 1265 aa11.25□□□□□ -0.61
CD44-239ENST00000639002 SLC10A3P09131 477 aa11.24□□□□□ -0.61
CD44-239ENST00000639002 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.24□□□□□ -0.61
CD44-239ENST00000639002 ZNF516Q92618 1163 aa11.24□□□□□ -0.61
CD44-239ENST00000639002 NLRP7Q8WX94 980 aa11.23□□□□□ -0.61
CD44-239ENST00000639002 NECTIN2Q92692 538 aa11.21□□□□□ -0.61
CD44-239ENST00000639002 IL21Q9HBE4 155 aa11.21□□□□□ -0.61
CD44-239ENST00000639002 SLC4A3P48751 1232 aa11.18□□□□□ -0.62
CD44-239ENST00000639002 TULP1O00294 542 aaPredicted RBP11.17□□□□□ -0.62
CD44-239ENST00000639002 COPS2P61201 443 aa11.17□□□□□ -0.62
CD44-239ENST00000639002 NKX2-3Q8TAU0 364 aa11.17□□□□□ -0.62
CD44-239ENST00000639002 RGS20O76081 388 aa11.16□□□□□ -0.62
CD44-239ENST00000639002 DAXXQ9UER7 740 aaPredicted RBP11.16□□□□□ -0.62
CD44-239ENST00000639002 IRF6O14896 467 aa11.15□□□□□ -0.62
CD44-239ENST00000639002 ACTN4O43707 911 aaKnown RBP11.15□□□□□ -0.62
CD44-239ENST00000639002 CFHP08603 1231 aa11.15□□□□□ -0.62
CD44-239ENST00000639002 MAP2K5Q13163 448 aa11.15□□□□□ -0.62
CD44-239ENST00000639002 BLOC1S3Q6QNY0 202 aa11.15□□□□□ -0.62
CD44-239ENST00000639002 LMOD2Q6P5Q4 547 aa11.14□□□□□ -0.63
CD44-239ENST00000639002 PCDHB3Q9Y5E6 796 aa11.14□□□□□ -0.63
CD44-239ENST00000639002 PRR14Q9BWN1 585 aa11.13□□□□□ -0.63
CD44-239ENST00000639002 ZPR1O75312 459 aa11.12□□□□□ -0.63
CD44-239ENST00000639002 MINK1Q8N4C8 1332 aaPredicted RBP11.11□□□□□ -0.63
CD44-239ENST00000639002 KMT5BQ4FZB7 885 aa11.11□□□□□ -0.63
CD44-239ENST00000639002 PPP1R18Q6NYC8 613 aa11.11□□□□□ -0.63
CD44-239ENST00000639002 DDX11L8A8MPP1 907 aa11.09□□□□□ -0.63
CD44-239ENST00000639002 CCDC102AQ96A19 550 aa11.08□□□□□ -0.64
CD44-239ENST00000639002 PUS10Q3MIT2 529 aaKnown RBP11.06□□□□□ -0.64
CD44-239ENST00000639002 RDH13Q8NBN7 331 aa11.06□□□□□ -0.64
CD44-239ENST00000639002 ZC3H15Q8WU90 426 aaKnown RBP11.06□□□□□ -0.64
CD44-239ENST00000639002 TLL1O43897 1013 aa11.05□□□□□ -0.64
CD44-239ENST00000639002 ZMYND10O75800 440 aa11.05□□□□□ -0.64
CD44-239ENST00000639002 GCGRP47871 477 aa11.05□□□□□ -0.64
CD44-239ENST00000639002 RSPH4AQ5TD94 716 aa11.05□□□□□ -0.64
CD44-239ENST00000639002 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.05□□□□□ -0.64
CD44-239ENST00000639002 BARGINQ6ZT62 677 aa11.04□□□□□ -0.64
CD44-239ENST00000639002 SCUBE3Q8IX30 993 aa11.03□□□□□ -0.64
CD44-239ENST00000639002 MDM2Q00987 491 aaPredicted RBP11.02□□□□□ -0.65
CD44-239ENST00000639002 FUT2Q10981 343 aa11.02□□□□□ -0.65
CD44-239ENST00000639002 SULF1Q8IWU6 871 aa11.02□□□□□ -0.65
CD44-239ENST00000639002 TMUB1Q9BVT8 246 aa11.02□□□□□ -0.65
CD44-239ENST00000639002 CD46P15529 392 aa11.01□□□□□ -0.65
CD44-239ENST00000639002 MORN1Q5T089 497 aa11□□□□□ -0.65
CD44-239ENST00000639002 REPIN1Q9BWE0 567 aaKnown RBP11□□□□□ -0.65
CD44-239ENST00000639002 NR1I2O75469 434 aa10.99□□□□□ -0.65
CD44-239ENST00000639002 ATP6V1AP38606 617 aa10.98□□□□□ -0.65
CD44-239ENST00000639002 RNF223E7ERA6 249 aa10.97□□□□□ -0.65
CD44-239ENST00000639002 ADH1BP00325 375 aa10.97□□□□□ -0.65
CD44-239ENST00000639002 EMID1Q96A84 441 aaPredicted RBP10.97□□□□□ -0.65
CD44-239ENST00000639002 PRKD2Q9BZL6 878 aa10.97□□□□□ -0.65
CD44-239ENST00000639002 KRI1Q8N9T8 703 aaKnown RBP10.96□□□□□ -0.65
CD44-239ENST00000639002 THAP11Q96EK4 314 aa10.96□□□□□ -0.65
CD44-239ENST00000639002 SLC27A5Q9Y2P5 690 aa10.96□□□□□ -0.65
CD44-239ENST00000639002 PPEF1O14829 653 aaPredicted RBP10.95□□□□□ -0.66
CD44-239ENST00000639002 S1PR4O95977 384 aa10.95□□□□□ -0.66
CD44-239ENST00000639002 GPCPD1Q9NPB8 672 aa10.95□□□□□ -0.66
CD44-239ENST00000639002 FAM217BQ9NTX9 383 aaPredicted RBP10.95□□□□□ -0.66
CD44-239ENST00000639002 GGCXP38435 758 aa10.94□□□□□ -0.66
CD44-239ENST00000639002 IRX2Q9BZI1 471 aaPredicted RBP10.94□□□□□ -0.66
CD44-239ENST00000639002 CLCN1P35523 988 aa10.93□□□□□ -0.66
CD44-239ENST00000639002 SPSB2Q99619 263 aa10.93□□□□□ -0.66
CD44-239ENST00000639002 V9GY48 417 aaPredicted RBP10.93□□□□□ -0.66
CD44-239ENST00000639002 FAM160A2Q8N612 972 aaPredicted RBP10.91□□□□□ -0.66
CD44-239ENST00000639002 KDM4AO75164 1064 aa10.9□□□□□ -0.66
CD44-239ENST00000639002 BRICD5Q6PL45 260 aa10.9□□□□□ -0.66
CD44-239ENST00000639002 HLA-CQ95604 372 aa10.9□□□□□ -0.66
CD44-239ENST00000639002 SLC6A16Q9GZN6 736 aa10.9□□□□□ -0.66
CD44-239ENST00000639002 AMHR2Q16671 573 aa10.89□□□□□ -0.67
CD44-239ENST00000639002 ANKLE1Q8NAG6 615 aa10.89□□□□□ -0.67
CD44-239ENST00000639002 SALL2Q9Y467 1007 aaPredicted RBP10.89□□□□□ -0.67
CD44-239ENST00000639002 SLC24A1O60721 1099 aa10.88□□□□□ -0.67
CD44-239ENST00000639002 PLA2G2CQ5R387 149 aa10.88□□□□□ -0.67
CD44-239ENST00000639002 RNF19BQ6ZMZ0 732 aa10.88□□□□□ -0.67
CD44-239ENST00000639002 FMNL1O95466 1100 aaPredicted RBP10.87□□□□□ -0.67
CD44-239ENST00000639002 SSTR3P32745 418 aaPredicted RBP10.87□□□□□ -0.67
CD44-239ENST00000639002 TRIM66O15016 1216 aa10.86□□□□□ -0.67
CD44-239ENST00000639002 LIAT1Q6ZQX7 453 aa10.86□□□□□ -0.67
CD44-239ENST00000639002 GRIPAP1Q4V328 841 aa10.85□□□□□ -0.67
CD44-239ENST00000639002 HOXA2O43364 376 aa10.84□□□□□ -0.67
CD44-239ENST00000639002 SLC19A1P41440 591 aa10.84□□□□□ -0.67
CD44-239ENST00000639002 GUCA2AQ02747 115 aa10.84□□□□□ -0.67
CD44-239ENST00000639002 PRDM9Q9NQV7 894 aa10.84□□□□□ -0.67
CD44-239ENST00000639002 USP46P62068 366 aa10.83□□□□□ -0.68
CD44-239ENST00000639002 GIGYF2Q6Y7W6 1299 aaKnown RBP10.82□□□□□ -0.68
CD44-239ENST00000639002 AK7Q96M32 723 aa10.82□□□□□ -0.68
CD44-239ENST00000639002 GFRA3O60609 400 aa10.81□□□□□ -0.68
CD44-239ENST00000639002 TTLL12Q14166 644 aaPredicted RBP10.81□□□□□ -0.68
CD44-239ENST00000639002 SPRYD7Q5W111 196 aa10.81□□□□□ -0.68
CD44-239ENST00000639002 TRIM67Q6ZTA4 783 aa10.81□□□□□ -0.68
CD44-239ENST00000639002 PARP9Q8IXQ6 854 aa10.81□□□□□ -0.68
CD44-239ENST00000639002 MSS51Q4VC12 460 aa10.8□□□□□ -0.68
CD44-239ENST00000639002 SLC24A3Q9HC58 644 aa10.8□□□□□ -0.68
CD44-239ENST00000639002 Q3C1V9 767 aa10.79□□□□□ -0.68
CD44-239ENST00000639002 SPIRE2Q8WWL2 714 aa10.79□□□□□ -0.68
CD44-239ENST00000639002 LCE2BO14633 110 aa10.78□□□□□ -0.68
CD44-239ENST00000639002 MS4A1P11836 297 aa10.78□□□□□ -0.68
CD44-239ENST00000639002 SYMPKQ92797 1274 aaKnown RBP10.78□□□□□ -0.68
CD44-239ENST00000639002 PCDHGC3Q9UN70 934 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms