RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 LIAT1Q6ZQX7 453 aa3.68□□□□□ -1.82
SMARCB1-209ENST00000635578 RBM27Q9P2N5 1060 aaKnown RBP3.68□□□□□ -1.82
SMARCB1-209ENST00000635578 ZNF598Q86UK7 904 aaKnown RBP3.67□□□□□ -1.82
SMARCB1-209ENST00000635578 TTC13Q8NBP0 860 aa3.67□□□□□ -1.82
SMARCB1-209ENST00000635578 PRR14Q9BWN1 585 aa3.67□□□□□ -1.82
SMARCB1-209ENST00000635578 NPDC1Q9NQX5 325 aaPredicted RBP3.67□□□□□ -1.82
SMARCB1-209ENST00000635578 WDR70Q9NW82 654 aa3.67□□□□□ -1.82
SMARCB1-209ENST00000635578 PRR20EP86478 221 aa3.66□□□□□ -1.82
SMARCB1-209ENST00000635578 PRR20CP86479 221 aa3.66□□□□□ -1.82
SMARCB1-209ENST00000635578 PRR20DP86480 221 aa3.66□□□□□ -1.82
SMARCB1-209ENST00000635578 PRR20BP86481 221 aa3.66□□□□□ -1.82
SMARCB1-209ENST00000635578 PRR20AP86496 221 aa3.66□□□□□ -1.82
SMARCB1-209ENST00000635578 FOXC1Q12948 553 aa3.66□□□□□ -1.82
SMARCB1-209ENST00000635578 ANKLE1Q8NAG6 615 aa3.66□□□□□ -1.82
SMARCB1-209ENST00000635578 EYA1Q99502 592 aa3.66□□□□□ -1.82
SMARCB1-209ENST00000635578 CFHP08603 1231 aa3.65□□□□□ -1.83
SMARCB1-209ENST00000635578 PLA2G2CQ5R387 149 aa3.65□□□□□ -1.83
SMARCB1-209ENST00000635578 TREML4Q6UXN2 200 aa3.65□□□□□ -1.83
SMARCB1-209ENST00000635578 GDF9O60383 454 aa3.64□□□□□ -1.83
SMARCB1-209ENST00000635578 ADH1BP00325 375 aa3.64□□□□□ -1.83
SMARCB1-209ENST00000635578 FAM161AQ3B820 660 aa3.64□□□□□ -1.83
SMARCB1-209ENST00000635578 KMT5BQ4FZB7 885 aa3.64□□□□□ -1.83
SMARCB1-209ENST00000635578 BBXQ8WY36 941 aaPredicted RBP3.64□□□□□ -1.83
SMARCB1-209ENST00000635578 AAASQ9NRG9 546 aa3.64□□□□□ -1.83
SMARCB1-209ENST00000635578 ACTN4O43707 911 aaKnown RBP3.63□□□□□ -1.83
SMARCB1-209ENST00000635578 DNAJB2P25686 324 aa3.63□□□□□ -1.83
SMARCB1-209ENST00000635578 SPRYD3Q8NCJ5 442 aa3.63□□□□□ -1.83
SMARCB1-209ENST00000635578 SLC6A16Q9GZN6 736 aa3.63□□□□□ -1.83
SMARCB1-209ENST00000635578 DACH1Q9UI36 760 aa3.63□□□□□ -1.83
SMARCB1-209ENST00000635578 ARIH1Q9Y4X5 557 aaPredicted RBP3.63□□□□□ -1.83
SMARCB1-209ENST00000635578 NR1I2O75469 434 aa3.62□□□□□ -1.83
SMARCB1-209ENST00000635578 RBM46Q8TBY0 533 aaKnown RBP3.62□□□□□ -1.83
SMARCB1-209ENST00000635578 TMEM134Q9H6X4 195 aa3.62□□□□□ -1.83
SMARCB1-209ENST00000635578 PKD2L1Q9P0L9 805 aa3.62□□□□□ -1.83
SMARCB1-209ENST00000635578 GMPR2Q9P2T1 348 aaKnown RBP3.62□□□□□ -1.83
SMARCB1-209ENST00000635578 RCCD1A6NED2 376 aa3.61□□□□□ -1.83
SMARCB1-209ENST00000635578 C11orf95C9JLR9 678 aaPredicted RBP3.61□□□□□ -1.83
SMARCB1-209ENST00000635578 WFS1O76024 890 aa3.61□□□□□ -1.83
SMARCB1-209ENST00000635578 SLC10A3P09131 477 aa3.61□□□□□ -1.83
SMARCB1-209ENST00000635578 MLLT3P42568 568 aaPredicted RBP3.61□□□□□ -1.83
SMARCB1-209ENST00000635578 PUS10Q3MIT2 529 aaKnown RBP3.61□□□□□ -1.83
SMARCB1-209ENST00000635578 LCE2AQ5TA79 106 aaPredicted RBP3.61□□□□□ -1.83
SMARCB1-209ENST00000635578 CFAP44Q96MT7 982 aa3.61□□□□□ -1.83
SMARCB1-209ENST00000635578 ADGRG1Q9Y653 693 aa3.61□□□□□ -1.83
SMARCB1-209ENST00000635578 NUTM2FA1L443 756 aa3.6□□□□□ -1.83
SMARCB1-209ENST00000635578 AXIN1O15169 862 aa3.6□□□□□ -1.83
SMARCB1-209ENST00000635578 PTGDRQ13258 359 aa3.6□□□□□ -1.83
SMARCB1-209ENST00000635578 PAXIP1Q6ZW49 1069 aaPredicted RBP3.6□□□□□ -1.83
SMARCB1-209ENST00000635578 CYP4X1Q8N118 509 aa3.6□□□□□ -1.83
SMARCB1-209ENST00000635578 ZBTB4Q9P1Z0 1013 aaPredicted RBP3.6□□□□□ -1.83
SMARCB1-209ENST00000635578 SCUBE3Q8IX30 993 aa3.59□□□□□ -1.83
SMARCB1-209ENST00000635578 SPSB2Q99619 263 aa3.59□□□□□ -1.83
SMARCB1-209ENST00000635578 TTC24A2A3L6 582 aaPredicted RBP3.58□□□□□ -1.84
SMARCB1-209ENST00000635578 TOR4AQ9NXH8 423 aa3.58□□□□□ -1.84
SMARCB1-209ENST00000635578 STK17AQ9UEE5 414 aa3.58□□□□□ -1.84
SMARCB1-209ENST00000635578 FCF1Q9Y324 198 aaKnown RBP3.58□□□□□ -1.84
SMARCB1-209ENST00000635578 CD2BP2O95400 341 aaKnown RBP3.57□□□□□ -1.84
SMARCB1-209ENST00000635578 NFX1Q12986 1120 aaKnown RBP3.57□□□□□ -1.84
SMARCB1-209ENST00000635578 LMOD2Q6P5Q4 547 aa3.57□□□□□ -1.84
SMARCB1-209ENST00000635578 CRIPAKQ8N1N5 446 aa3.57□□□□□ -1.84
SMARCB1-209ENST00000635578 PRDM9Q9NQV7 894 aa3.57□□□□□ -1.84
SMARCB1-209ENST00000635578 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.56□□□□□ -1.84
SMARCB1-209ENST00000635578 AVPP01185 164 aa3.56□□□□□ -1.84
SMARCB1-209ENST00000635578 SNRPBP14678 240 aaKnown RBP3.56□□□□□ -1.84
SMARCB1-209ENST00000635578 RPIAP49247 311 aa3.56□□□□□ -1.84
SMARCB1-209ENST00000635578 INSM1Q01101 510 aaPredicted RBP3.56□□□□□ -1.84
SMARCB1-209ENST00000635578 RSPH4AQ5TD94 716 aa3.56□□□□□ -1.84
SMARCB1-209ENST00000635578 RDH13Q8NBN7 331 aa3.56□□□□□ -1.84
SMARCB1-209ENST00000635578 FCHSD2O94868 740 aa3.55□□□□□ -1.84
SMARCB1-209ENST00000635578 CTC1Q2NKJ3 1217 aa3.55□□□□□ -1.84
SMARCB1-209ENST00000635578 LCE2CQ5TA81 110 aa3.55□□□□□ -1.84
SMARCB1-209ENST00000635578 NLRP7Q8WX94 980 aa3.55□□□□□ -1.84
SMARCB1-209ENST00000635578 ATP13A2Q9NQ11 1180 aa3.55□□□□□ -1.84
SMARCB1-209ENST00000635578 ZBTB24O43167 697 aaPredicted RBP3.54□□□□□ -1.84
SMARCB1-209ENST00000635578 WIPF1O43516 503 aa3.54□□□□□ -1.84
SMARCB1-209ENST00000635578 FMNL1O95466 1100 aaPredicted RBP3.54□□□□□ -1.84
SMARCB1-209ENST00000635578 FUT2Q10981 343 aa3.54□□□□□ -1.84
SMARCB1-209ENST00000635578 MORN1Q5T089 497 aa3.54□□□□□ -1.84
SMARCB1-209ENST00000635578 FAM160A2Q8N612 972 aaPredicted RBP3.54□□□□□ -1.84
SMARCB1-209ENST00000635578 KCNV2Q8TDN2 545 aa3.54□□□□□ -1.84
SMARCB1-209ENST00000635578 PXYLP1Q8TE99 480 aa3.54□□□□□ -1.84
SMARCB1-209ENST00000635578 ARHGEF1Q92888 912 aaKnown RBP3.54□□□□□ -1.84
SMARCB1-209ENST00000635578 DDX11L8A8MPP1 907 aa3.53□□□□□ -1.84
SMARCB1-209ENST00000635578 J3QL48 77 aa3.53□□□□□ -1.84
SMARCB1-209ENST00000635578 TERTO14746 1132 aaKnown RBP3.53□□□□□ -1.84
SMARCB1-209ENST00000635578 OATP04181 439 aa3.53□□□□□ -1.84
SMARCB1-209ENST00000635578 SMPD1P17405 629 aa3.53□□□□□ -1.84
SMARCB1-209ENST00000635578 FECHP22830 423 aa3.53□□□□□ -1.84
SMARCB1-209ENST00000635578 SMCPP49901 116 aaPredicted RBP3.53□□□□□ -1.84
SMARCB1-209ENST00000635578 METTL3Q86U44 580 aaKnown RBP3.53□□□□□ -1.84
SMARCB1-209ENST00000635578 THAP11Q96EK4 314 aa3.53□□□□□ -1.84
SMARCB1-209ENST00000635578 SLC27A5Q9Y2P5 690 aa3.53□□□□□ -1.84
SMARCB1-209ENST00000635578 WNT7AO00755 349 aa3.52□□□□□ -1.85
SMARCB1-209ENST00000635578 SNIP1Q8TAD8 396 aaKnown RBP3.52□□□□□ -1.85
SMARCB1-209ENST00000635578 HPS1Q92902 700 aa3.52□□□□□ -1.85
SMARCB1-209ENST00000635578 MRGPRX2Q96LB1 330 aa3.52□□□□□ -1.85
SMARCB1-209ENST00000635578 TRIM47Q96LD4 638 aa3.52□□□□□ -1.85
SMARCB1-209ENST00000635578 ATP6V1AP38606 617 aa3.51□□□□□ -1.85
SMARCB1-209ENST00000635578 TRIM32Q13049 653 aa3.51□□□□□ -1.85
SMARCB1-209ENST00000635578 RNF19BQ6ZMZ0 732 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms