RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 ADGRL2O95490 1459 aa24.34■■□□□ 1.49
PDLIM3-213ENST00000629667 MSH6P52701 1360 aa24.34■■□□□ 1.49
PDLIM3-213ENST00000629667 MYO5BQ9ULV0 1848 aa24.34■■□□□ 1.49
PDLIM3-213ENST00000629667 RPRD2Q5VT52 1461 aaKnown RBP24.33■■□□□ 1.49
PDLIM3-213ENST00000629667 FAM50AQ14320 339 aaKnown RBP24.31■■□□□ 1.48
PDLIM3-213ENST00000629667 CHD2O14647 1828 aaKnown RBP24.31■■□□□ 1.48
PDLIM3-213ENST00000629667 GCC2Q8IWJ2 1684 aa24.3■■□□□ 1.48
PDLIM3-213ENST00000629667 ANKRD50Q9ULJ7 1429 aa24.3■■□□□ 1.48
PDLIM3-213ENST00000629667 PPP1R15AO75807 674 aaPredicted RBP24.29■■□□□ 1.48
PDLIM3-213ENST00000629667 HDGFP51858 240 aaKnown RBP24.29■■□□□ 1.48
PDLIM3-213ENST00000629667 POTEAQ6S8J7 498 aa24.29■■□□□ 1.48
PDLIM3-213ENST00000629667 PHLPP1O60346 1717 aa24.29■■□□□ 1.48
PDLIM3-213ENST00000629667 SLAIN2Q9P270 581 aa24.28■■□□□ 1.48
PDLIM3-213ENST00000629667 PLEKHG1Q9ULL1 1385 aa24.28■■□□□ 1.48
PDLIM3-213ENST00000629667 ZFYVE9O95405 1425 aa24.27■■□□□ 1.48
PDLIM3-213ENST00000629667 RIMS2Q9UQ26 1411 aa24.26■■□□□ 1.47
PDLIM3-213ENST00000629667 TMEM131LA2VDJ0 1609 aa24.25■■□□□ 1.47
PDLIM3-213ENST00000629667 JCADQ9P266 1359 aa24.22■■□□□ 1.47
PDLIM3-213ENST00000629667 CHGAP10645 457 aaKnown RBP24.21■■□□□ 1.47
PDLIM3-213ENST00000629667 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.2■■□□□ 1.46
PDLIM3-213ENST00000629667 TBX22Q9Y458 520 aa24.2■■□□□ 1.46
PDLIM3-213ENST00000629667 UNC13BO14795 1591 aa24.2■■□□□ 1.46
PDLIM3-213ENST00000629667 C14orf37Q86TY3 774 aa24.19■■□□□ 1.46
PDLIM3-213ENST00000629667 NCOA3Q9Y6Q9 1424 aa24.18■■□□□ 1.46
PDLIM3-213ENST00000629667 E9PCH4 1651 aa24.18■■□□□ 1.46
PDLIM3-213ENST00000629667 COL16A1Q07092 1604 aaPredicted RBP24.17■■□□□ 1.46
PDLIM3-213ENST00000629667 NUTM2DQ5VT03 806 aaPredicted RBP24.15■■□□□ 1.46
PDLIM3-213ENST00000629667 SETD1AO15047 1707 aaKnown RBP24.15■■□□□ 1.46
PDLIM3-213ENST00000629667 DIP2AQ14689 1571 aa24.14■■□□□ 1.45
PDLIM3-213ENST00000629667 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.13■■□□□ 1.45
PDLIM3-213ENST00000629667 ADAMTS13Q76LX8 1427 aa24.12■■□□□ 1.45
PDLIM3-213ENST00000629667 CADPS2Q86UW7 1296 aa24.12■■□□□ 1.45
PDLIM3-213ENST00000629667 IQGAP3Q86VI3 1631 aa24.11■■□□□ 1.45
PDLIM3-213ENST00000629667 ATF3P18847 181 aa24.11■■□□□ 1.45
PDLIM3-213ENST00000629667 C19orf44Q9H6X5 657 aa24.11■■□□□ 1.45
PDLIM3-213ENST00000629667 PIK3R4Q99570 1358 aa24.11■■□□□ 1.45
PDLIM3-213ENST00000629667 SPATA31A6Q5VVP1 1343 aa24.1■■□□□ 1.45
PDLIM3-213ENST00000629667 MEX3CQ5U5Q3 659 aaKnown RBP24.09■■□□□ 1.45
PDLIM3-213ENST00000629667 TRPM2O94759 1503 aa24.08■■□□□ 1.45
PDLIM3-213ENST00000629667 ROCK1Q13464 1354 aa24.07■■□□□ 1.44
PDLIM3-213ENST00000629667 AHDC1Q5TGY3 1603 aaPredicted RBP24.07■■□□□ 1.44
PDLIM3-213ENST00000629667 LRP6O75581 1613 aa24.06■■□□□ 1.44
PDLIM3-213ENST00000629667 SHPRHQ149N8 1683 aa24.06■■□□□ 1.44
PDLIM3-213ENST00000629667 AMOTL2Q9Y2J4 779 aa24.05■■□□□ 1.44
PDLIM3-213ENST00000629667 NUP155O75694 1391 aa24.04■■□□□ 1.44
PDLIM3-213ENST00000629667 ZNF772Q68DY9 489 aaPredicted RBP24.04■■□□□ 1.44
PDLIM3-213ENST00000629667 PTPRUQ92729 1446 aa24.01■■□□□ 1.43
PDLIM3-213ENST00000629667 ITGAEP38570 1179 aa23.99■■□□□ 1.43
PDLIM3-213ENST00000629667 BRINP3Q76B58 766 aa23.99■■□□□ 1.43
PDLIM3-213ENST00000629667 TRIM52Q96A61 297 aa23.98■■□□□ 1.43
PDLIM3-213ENST00000629667 DCCP43146 1447 aa23.97■■□□□ 1.43
PDLIM3-213ENST00000629667 SPHKAPQ2M3C7 1700 aa23.97■■□□□ 1.43
PDLIM3-213ENST00000629667 XRN1Q8IZH2 1706 aaKnown RBP23.96■■□□□ 1.43
PDLIM3-213ENST00000629667 NRXN3Q9Y4C0 1643 aa23.96■■□□□ 1.43
PDLIM3-213ENST00000629667 NUTM2BA6NNL0 878 aaPredicted RBP23.95■■□□□ 1.42
PDLIM3-213ENST00000629667 NUTM2EB1AL46 878 aaPredicted RBP23.95■■□□□ 1.42
PDLIM3-213ENST00000629667 ZNF326Q5BKZ1 582 aaKnown RBP23.95■■□□□ 1.42
PDLIM3-213ENST00000629667 NUTM2AQ8IVF1 878 aaPredicted RBP23.95■■□□□ 1.42
PDLIM3-213ENST00000629667 SETBP1Q9Y6X0 1596 aa23.95■■□□□ 1.42
PDLIM3-213ENST00000629667 ASXL1Q8IXJ9 1541 aa23.94■■□□□ 1.42
PDLIM3-213ENST00000629667 RXRBP28702 533 aa23.92■■□□□ 1.42
PDLIM3-213ENST00000629667 UPF1Q92900 1129 aaKnown RBP eCLIP23.92■■□□□ 1.42
PDLIM3-213ENST00000629667 NHSL1Q5SYE7 1610 aa23.91■■□□□ 1.42
PDLIM3-213ENST00000629667 MST1RQ04912 1400 aa23.9■■□□□ 1.42
PDLIM3-213ENST00000629667 SETD5Q9C0A6 1442 aa23.89■■□□□ 1.41
PDLIM3-213ENST00000629667 METP08581 1390 aa23.88■■□□□ 1.41
PDLIM3-213ENST00000629667 LRRC59Q96AG4 307 aaKnown RBP23.87■■□□□ 1.41
PDLIM3-213ENST00000629667 AFF2P51816 1311 aa23.86■■□□□ 1.41
PDLIM3-213ENST00000629667 CDK12Q9NYV4 1490 aaPredicted RBP23.84■■□□□ 1.41
PDLIM3-213ENST00000629667 KIF1BO60333 1816 aa23.84■■□□□ 1.41
PDLIM3-213ENST00000629667 NALCNQ8IZF0 1738 aa23.84■■□□□ 1.41
PDLIM3-213ENST00000629667 ADGRL3Q9HAR2 1447 aa23.84■■□□□ 1.41
PDLIM3-213ENST00000629667 CLTCL1P53675 1640 aa23.83■■□□□ 1.41
PDLIM3-213ENST00000629667 NEXMIFQ5QGS0 1516 aa23.83■■□□□ 1.41
PDLIM3-213ENST00000629667 PPARGC1BQ86YN6 1023 aaKnown RBP23.81■■□□□ 1.4
PDLIM3-213ENST00000629667 DDX17Q92841 729 aaKnown RBP23.81■■□□□ 1.4
PDLIM3-213ENST00000629667 C8orf37Q96NL8 207 aa23.8■■□□□ 1.4
PDLIM3-213ENST00000629667 PNPLA6Q8IY17 1366 aa23.78■■□□□ 1.4
PDLIM3-213ENST00000629667 QTRT2Q9H974 415 aaKnown RBP23.76■■□□□ 1.39
PDLIM3-213ENST00000629667 RBM6P78332 1123 aaKnown RBP23.75■■□□□ 1.39
PDLIM3-213ENST00000629667 C1orf167Q5SNV9 1468 aa23.74■■□□□ 1.39
PDLIM3-213ENST00000629667 VGFO15240 615 aaPredicted RBP23.72■■□□□ 1.39
PDLIM3-213ENST00000629667 ADAMTS2O95450 1211 aa23.72■■□□□ 1.39
PDLIM3-213ENST00000629667 NGLY1Q96IV0 654 aa23.72■■□□□ 1.39
PDLIM3-213ENST00000629667 RGS12O14924 1447 aa23.72■■□□□ 1.39
PDLIM3-213ENST00000629667 LAMC1P11047 1609 aa23.71■■□□□ 1.39
PDLIM3-213ENST00000629667 PTCH1Q13635 1447 aa23.71■■□□□ 1.39
PDLIM3-213ENST00000629667 ROBO2Q9HCK4 1378 aa23.68■■□□□ 1.38
PDLIM3-213ENST00000629667 ORAI2Q96SN7 254 aa23.68■■□□□ 1.38
PDLIM3-213ENST00000629667 NAIPQ13075 1403 aa23.67■■□□□ 1.38
PDLIM3-213ENST00000629667 SOS2Q07890 1332 aaPredicted RBP23.67■■□□□ 1.38
PDLIM3-213ENST00000629667 RPGRIP1LQ68CZ1 1315 aa23.64■■□□□ 1.38
PDLIM3-213ENST00000629667 USP21Q9UK80 565 aa23.64■■□□□ 1.37
PDLIM3-213ENST00000629667 PPLO60437 1756 aa23.63■■□□□ 1.37
PDLIM3-213ENST00000629667 RRBP1Q9P2E9 1410 aaKnown RBP23.63■■□□□ 1.37
PDLIM3-213ENST00000629667 HFM1A2PYH4 1435 aa23.62■■□□□ 1.37
PDLIM3-213ENST00000629667 PRAG1Q86YV5 1406 aa23.62■■□□□ 1.37
PDLIM3-213ENST00000629667 TRPC5Q9UL62 973 aaPredicted RBP23.61■■□□□ 1.37
PDLIM3-213ENST00000629667 SLC4A1APQ9BWU0 796 aaKnown RBP23.6■■□□□ 1.37
PDLIM3-213ENST00000629667 COL22A1Q8NFW1 1626 aaPredicted RBP23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms