RNA–Protein interactions for RNA: ENST00000606782.1

CTSA-213, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 582 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-213ENST00000606782 SCAF1Q9H7N4 1312 aaKnown RBP20.29■□□□□ 0.84
CTSA-213ENST00000606782 RIMS2Q9UQ26 1411 aa20.29■□□□□ 0.84
CTSA-213ENST00000606782 PLEKHG1Q9ULL1 1385 aa20.29■□□□□ 0.84
CTSA-213ENST00000606782 MYO5BQ9ULV0 1848 aa20.29■□□□□ 0.84
CTSA-213ENST00000606782 XIRP1Q702N8 1843 aaKnown RBP20.28■□□□□ 0.84
CTSA-213ENST00000606782 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.27■□□□□ 0.84
CTSA-213ENST00000606782 ILDR2Q71H61 639 aa20.25■□□□□ 0.83
CTSA-213ENST00000606782 NAIPQ13075 1403 aa20.25■□□□□ 0.83
CTSA-213ENST00000606782 NWD1Q149M9 1564 aa20.25■□□□□ 0.83
CTSA-213ENST00000606782 TMEM94Q12767 1356 aa20.24■□□□□ 0.83
CTSA-213ENST00000606782 TBX22Q9Y458 520 aa20.24■□□□□ 0.83
CTSA-213ENST00000606782 NKTRP30414 1462 aaKnown RBP20.24■□□□□ 0.83
CTSA-213ENST00000606782 PPP1R15AO75807 674 aaPredicted RBP20.22■□□□□ 0.83
CTSA-213ENST00000606782 CHGAP10645 457 aaKnown RBP20.21■□□□□ 0.83
CTSA-213ENST00000606782 PROSER2Q86WR7 435 aaPredicted RBP20.21■□□□□ 0.83
CTSA-213ENST00000606782 BCANQ96GW7 911 aa20.2■□□□□ 0.82
CTSA-213ENST00000606782 CHD2O14647 1828 aaKnown RBP20.2■□□□□ 0.82
CTSA-213ENST00000606782 HFM1A2PYH4 1435 aa20.19■□□□□ 0.82
CTSA-213ENST00000606782 FAM135BQ49AJ0 1406 aa20.19■□□□□ 0.82
CTSA-213ENST00000606782 ADAMTS13Q76LX8 1427 aa20.19■□□□□ 0.82
CTSA-213ENST00000606782 SPHKAPQ2M3C7 1700 aa20.18■□□□□ 0.82
CTSA-213ENST00000606782 PIK3R4Q99570 1358 aa20.18■□□□□ 0.82
CTSA-213ENST00000606782 DIP2AQ14689 1571 aa20.16■□□□□ 0.82
CTSA-213ENST00000606782 NCOA3Q9Y6Q9 1424 aa20.15■□□□□ 0.82
CTSA-213ENST00000606782 MED1Q15648 1581 aaPredicted RBP20.14■□□□□ 0.81
CTSA-213ENST00000606782 SOCS7O14512 581 aa20.13■□□□□ 0.81
CTSA-213ENST00000606782 NUTM2DQ5VT03 806 aaPredicted RBP20.13■□□□□ 0.81
CTSA-213ENST00000606782 RBM33Q96EV2 1170 aaKnown RBP20.13■□□□□ 0.81
CTSA-213ENST00000606782 TRPM2O94759 1503 aa20.12■□□□□ 0.81
CTSA-213ENST00000606782 MSH6P52701 1360 aa20.11■□□□□ 0.81
CTSA-213ENST00000606782 SENP3Q9H4L4 574 aaPredicted RBP20.11■□□□□ 0.81
CTSA-213ENST00000606782 CLTCL1P53675 1640 aa20.09■□□□□ 0.81
CTSA-213ENST00000606782 SETBP1Q9Y6X0 1596 aa20.08■□□□□ 0.81
CTSA-213ENST00000606782 SLAIN2Q9P270 581 aa20.08■□□□□ 0.81
CTSA-213ENST00000606782 NRXN3Q9Y4C0 1643 aa20.07■□□□□ 0.8
CTSA-213ENST00000606782 PTPRUQ92729 1446 aa20.06■□□□□ 0.8
CTSA-213ENST00000606782 TRIM52Q96A61 297 aa20.06■□□□□ 0.8
CTSA-213ENST00000606782 ZNF326Q5BKZ1 582 aaKnown RBP20.05■□□□□ 0.8
CTSA-213ENST00000606782 AMOTL2Q9Y2J4 779 aa20.05■□□□□ 0.8
CTSA-213ENST00000606782 ROBO1Q9Y6N7 1651 aa20.05■□□□□ 0.8
CTSA-213ENST00000606782 NEXMIFQ5QGS0 1516 aa20.05■□□□□ 0.8
CTSA-213ENST00000606782 SLC4A1APQ9BWU0 796 aaKnown RBP20.04■□□□□ 0.8
CTSA-213ENST00000606782 C19orf44Q9H6X5 657 aa20.04■□□□□ 0.8
CTSA-213ENST00000606782 KIF1BO60333 1816 aa20.02■□□□□ 0.8
CTSA-213ENST00000606782 CADPS2Q86UW7 1296 aa20.01■□□□□ 0.79
CTSA-213ENST00000606782 XRN1Q8IZH2 1706 aaKnown RBP20.01■□□□□ 0.79
CTSA-213ENST00000606782 RPGRIP1LQ68CZ1 1315 aa20.01■□□□□ 0.79
CTSA-213ENST00000606782 METP08581 1390 aa19.99■□□□□ 0.79
CTSA-213ENST00000606782 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.99■□□□□ 0.79
CTSA-213ENST00000606782 VGFO15240 615 aaPredicted RBP19.98■□□□□ 0.79
CTSA-213ENST00000606782 DCCP43146 1447 aa19.97■□□□□ 0.79
CTSA-213ENST00000606782 C14orf37Q86TY3 774 aa19.97■□□□□ 0.79
CTSA-213ENST00000606782 ACIN1Q9UKV3 1341 aaKnown RBP19.97■□□□□ 0.79
CTSA-213ENST00000606782 ATF3P18847 181 aa19.96■□□□□ 0.79
CTSA-213ENST00000606782 PHF23Q9BUL5 403 aaPredicted RBP19.96■□□□□ 0.79
CTSA-213ENST00000606782 MPHOSPH9Q99550 1183 aa19.94■□□□□ 0.78
CTSA-213ENST00000606782 RGS17Q9UGC6 210 aaPredicted RBP19.93■□□□□ 0.78
CTSA-213ENST00000606782 PRAG1Q86YV5 1406 aa19.92■□□□□ 0.78
CTSA-213ENST00000606782 PHLPP1O60346 1717 aa19.91■□□□□ 0.78
CTSA-213ENST00000606782 FOXD1Q16676 465 aa19.91■□□□□ 0.78
CTSA-213ENST00000606782 JCADQ9P266 1359 aa19.91■□□□□ 0.78
CTSA-213ENST00000606782 COL16A1Q07092 1604 aaPredicted RBP19.91■□□□□ 0.78
CTSA-213ENST00000606782 SETD1AO15047 1707 aaKnown RBP19.9■□□□□ 0.78
CTSA-213ENST00000606782 AHDC1Q5TGY3 1603 aaPredicted RBP19.9■□□□□ 0.78
CTSA-213ENST00000606782 PPLO60437 1756 aa19.9■□□□□ 0.78
CTSA-213ENST00000606782 SPATA31E1Q6ZUB1 1445 aa19.89■□□□□ 0.77
CTSA-213ENST00000606782 ADGRL3Q9HAR2 1447 aa19.89■□□□□ 0.77
CTSA-213ENST00000606782 CCDC144AA2RUR9 1427 aa19.88■□□□□ 0.77
CTSA-213ENST00000606782 PTCH1Q13635 1447 aa19.88■□□□□ 0.77
CTSA-213ENST00000606782 SETD5Q9C0A6 1442 aa19.88■□□□□ 0.77
CTSA-213ENST00000606782 BRINP3Q76B58 766 aa19.88■□□□□ 0.77
CTSA-213ENST00000606782 MST1RQ04912 1400 aa19.87■□□□□ 0.77
CTSA-213ENST00000606782 ANKRD30BQ9BXX2 1392 aa19.84■□□□□ 0.77
CTSA-213ENST00000606782 ROBO2Q9HCK4 1378 aa19.83■□□□□ 0.77
CTSA-213ENST00000606782 SPATA31A6Q5VVP1 1343 aa19.83■□□□□ 0.77
CTSA-213ENST00000606782 ASXL1Q8IXJ9 1541 aa19.82■□□□□ 0.76
CTSA-213ENST00000606782 ADGRF5Q8IZF2 1346 aa19.82■□□□□ 0.76
CTSA-213ENST00000606782 NALCNQ8IZF0 1738 aa19.82■□□□□ 0.76
CTSA-213ENST00000606782 RGL3Q3MIN7 710 aa19.8■□□□□ 0.76
CTSA-213ENST00000606782 IFT172Q9UG01 1749 aa19.79■□□□□ 0.76
CTSA-213ENST00000606782 SHPRHQ149N8 1683 aa19.79■□□□□ 0.76
CTSA-213ENST00000606782 POTEAQ6S8J7 498 aa19.79■□□□□ 0.76
CTSA-213ENST00000606782 RAB3GAP2Q9H2M9 1393 aa19.79■□□□□ 0.76
CTSA-213ENST00000606782 NHSL1Q5SYE7 1610 aa19.77■□□□□ 0.76
CTSA-213ENST00000606782 C1orf167Q5SNV9 1468 aa19.77■□□□□ 0.76
CTSA-213ENST00000606782 TECPR2O15040 1411 aa19.76■□□□□ 0.75
CTSA-213ENST00000606782 HRCP23327 699 aa19.76■□□□□ 0.75
CTSA-213ENST00000606782 LRP6O75581 1613 aa19.76■□□□□ 0.75
CTSA-213ENST00000606782 PIK3C2GO75747 1445 aa19.76■□□□□ 0.75
CTSA-213ENST00000606782 ABCC11Q96J66 1382 aa19.75■□□□□ 0.75
CTSA-213ENST00000606782 LRPPRCP42704 1394 aaKnown RBP19.74■□□□□ 0.75
CTSA-213ENST00000606782 LAMC1P11047 1609 aa19.74■□□□□ 0.75
CTSA-213ENST00000606782 LRRC59Q96AG4 307 aaKnown RBP19.74■□□□□ 0.75
CTSA-213ENST00000606782 NRXN1Q9ULB1 1477 aa19.73■□□□□ 0.75
CTSA-213ENST00000606782 TRIM26Q12899 539 aaPredicted RBP19.71■□□□□ 0.75
CTSA-213ENST00000606782 SIRT1Q96EB6 747 aa19.71■□□□□ 0.75
CTSA-213ENST00000606782 C14orf93Q9H972 538 aaKnown RBP19.71■□□□□ 0.75
CTSA-213ENST00000606782 ORAI2Q96SN7 254 aa19.7■□□□□ 0.74
CTSA-213ENST00000606782 MYOM2P54296 1465 aa19.7■□□□□ 0.74
CTSA-213ENST00000606782 CDC42BPGQ6DT37 1551 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms