RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 ADGRF5Q8IZF2 1346 aa25.3■■□□□ 1.64
VRK3-225ENST00000601912 NBPF1Q3BBV0 1214 aa25.29■■□□□ 1.64
VRK3-225ENST00000601912 CEBPAP49715 358 aaPredicted RBP25.29■■□□□ 1.64
VRK3-225ENST00000601912 C3P01024 1663 aa25.28■■□□□ 1.64
VRK3-225ENST00000601912 NRXN1Q9ULB1 1477 aa25.28■■□□□ 1.64
VRK3-225ENST00000601912 NEXMIFQ5QGS0 1516 aa25.27■■□□□ 1.64
VRK3-225ENST00000601912 LAMC1P11047 1609 aa25.26■■□□□ 1.63
VRK3-225ENST00000601912 MYO5BQ9ULV0 1848 aa25.25■■□□□ 1.63
VRK3-225ENST00000601912 KIAA1210Q9ULL0 1709 aa25.25■■□□□ 1.63
VRK3-225ENST00000601912 ZFYVE9O95405 1425 aa25.24■■□□□ 1.63
VRK3-225ENST00000601912 A2ML1A8K2U0 1454 aa25.24■■□□□ 1.63
VRK3-225ENST00000601912 NLRP1Q9C000 1473 aa25.23■■□□□ 1.63
VRK3-225ENST00000601912 ADAMTSL3P82987 1691 aa25.23■■□□□ 1.63
VRK3-225ENST00000601912 PLPPR3Q6T4P5 718 aa25.23■■□□□ 1.63
VRK3-225ENST00000601912 PIK3C2GO75747 1445 aa25.22■■□□□ 1.63
VRK3-225ENST00000601912 CFAP70Q5T0N1 1121 aa25.21■■□□□ 1.63
VRK3-225ENST00000601912 RIMS1Q86UR5 1692 aaKnown RBP25.21■■□□□ 1.63
VRK3-225ENST00000601912 NUTM2DQ5VT03 806 aaPredicted RBP25.2■■□□□ 1.63
VRK3-225ENST00000601912 C14orf93Q9H972 538 aaKnown RBP25.19■■□□□ 1.62
VRK3-225ENST00000601912 KDM5AP29375 1690 aaKnown RBP25.19■■□□□ 1.62
VRK3-225ENST00000601912 HDGFP51858 240 aaKnown RBP25.18■■□□□ 1.62
VRK3-225ENST00000601912 ST20-MTHFSA0A0A6YYL1 179 aa25.17■■□□□ 1.62
VRK3-225ENST00000601912 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.17■■□□□ 1.62
VRK3-225ENST00000601912 RIMS2Q9UQ26 1411 aa25.16■■□□□ 1.62
VRK3-225ENST00000601912 SCAF11Q99590 1463 aaKnown RBP25.14■■□□□ 1.62
VRK3-225ENST00000601912 SETBP1Q9Y6X0 1596 aa25.13■■□□□ 1.61
VRK3-225ENST00000601912 DDX10Q13206 875 aaKnown RBP25.13■■□□□ 1.61
VRK3-225ENST00000601912 UBR1Q8IWV7 1749 aa25.13■■□□□ 1.61
VRK3-225ENST00000601912 WASHC2AQ641Q2 1341 aa25.12■■□□□ 1.61
VRK3-225ENST00000601912 EIF3AQ14152 1382 aaKnown RBP25.11■■□□□ 1.61
VRK3-225ENST00000601912 TMEM2Q9UHN6 1383 aa25.1■■□□□ 1.61
VRK3-225ENST00000601912 IQGAP1P46940 1657 aa25.09■■□□□ 1.61
VRK3-225ENST00000601912 CCDC7Q96M83 1385 aa25.09■■□□□ 1.61
VRK3-225ENST00000601912 C11orf95C9JLR9 678 aaPredicted RBP25.09■■□□□ 1.61
VRK3-225ENST00000601912 THEMISQ8N1K5 641 aaPredicted RBP25.07■■□□□ 1.6
VRK3-225ENST00000601912 KIF7Q2M1P5 1343 aa25.07■■□□□ 1.6
VRK3-225ENST00000601912 MYO3AQ8NEV4 1616 aa25.06■■□□□ 1.6
VRK3-225ENST00000601912 POLR1AO95602 1720 aaPredicted RBP25.05■■□□□ 1.6
VRK3-225ENST00000601912 ADGRB1O14514 1584 aa25.04■■□□□ 1.6
VRK3-225ENST00000601912 TMEM132EQ6IEE7 984 aa25.04■■□□□ 1.6
VRK3-225ENST00000601912 EID1Q9Y6B2 187 aa25.03■■□□□ 1.6
VRK3-225ENST00000601912 PTPRMP28827 1452 aa25.02■■□□□ 1.6
VRK3-225ENST00000601912 SETD1BQ9UPS6 1966 aaKnown RBP25.02■■□□□ 1.6
VRK3-225ENST00000601912 SLC24A1O60721 1099 aa25.02■■□□□ 1.6
VRK3-225ENST00000601912 TESK2Q96S53 571 aa25.02■■□□□ 1.6
VRK3-225ENST00000601912 SENP3Q9H4L4 574 aaPredicted RBP25.01■■□□□ 1.59
VRK3-225ENST00000601912 TMF1P82094 1093 aa25.01■■□□□ 1.59
VRK3-225ENST00000601912 ALKQ9UM73 1620 aa25■■□□□ 1.59
VRK3-225ENST00000601912 CEP170BQ9Y4F5 1589 aaPredicted RBP25■■□□□ 1.59
VRK3-225ENST00000601912 SLIT1O75093 1534 aa24.99■■□□□ 1.59
VRK3-225ENST00000601912 TXNDC2Q86VQ3 553 aa24.99■■□□□ 1.59
VRK3-225ENST00000601912 TRAK1Q9UPV9 953 aa24.99■■□□□ 1.59
VRK3-225ENST00000601912 POLR3GLQ9BT43 218 aa24.98■■□□□ 1.59
VRK3-225ENST00000601912 ARHGAP23Q9P227 1491 aa24.98■■□□□ 1.59
VRK3-225ENST00000601912 BCANQ96GW7 911 aa24.97■■□□□ 1.59
VRK3-225ENST00000601912 LTKP29376 864 aa24.95■■□□□ 1.58
VRK3-225ENST00000601912 CENPJQ9HC77 1338 aaPredicted RBP24.95■■□□□ 1.58
VRK3-225ENST00000601912 PLEKHG1Q9ULL1 1385 aa24.94■■□□□ 1.58
VRK3-225ENST00000601912 CDCA8Q53HL2 280 aa24.94■■□□□ 1.58
VRK3-225ENST00000601912 MIER1Q8N108 512 aa24.94■■□□□ 1.58
VRK3-225ENST00000601912 ZNF142P52746 1687 aaPredicted RBP24.93■■□□□ 1.58
VRK3-225ENST00000601912 ASXL1Q8IXJ9 1541 aa24.93■■□□□ 1.58
VRK3-225ENST00000601912 YTHDC2Q9H6S0 1430 aaKnown RBP24.92■■□□□ 1.58
VRK3-225ENST00000601912 DISP3Q9P2K9 1392 aa24.92■■□□□ 1.58
VRK3-225ENST00000601912 STK26Q9P289 416 aa24.91■■□□□ 1.58
VRK3-225ENST00000601912 SBNO2Q9Y2G9 1366 aa24.91■■□□□ 1.58
VRK3-225ENST00000601912 NRXN3Q9Y4C0 1643 aa24.91■■□□□ 1.58
VRK3-225ENST00000601912 SETD1AO15047 1707 aaKnown RBP24.87■■□□□ 1.57
VRK3-225ENST00000601912 LRPPRCP42704 1394 aaKnown RBP24.87■■□□□ 1.57
VRK3-225ENST00000601912 ARHGEF28Q8N1W1 1705 aaKnown RBP24.86■■□□□ 1.57
VRK3-225ENST00000601912 ANKLE2Q86XL3 938 aa24.86■■□□□ 1.57
VRK3-225ENST00000601912 ANP32CO43423 234 aa24.85■■□□□ 1.57
VRK3-225ENST00000601912 METP08581 1390 aa24.85■■□□□ 1.57
VRK3-225ENST00000601912 ADAMTS13Q76LX8 1427 aa24.85■■□□□ 1.57
VRK3-225ENST00000601912 QRICH2Q9H0J4 1663 aa24.83■■□□□ 1.57
VRK3-225ENST00000601912 ABCC11Q96J66 1382 aa24.83■■□□□ 1.57
VRK3-225ENST00000601912 POGKQ9P215 609 aa24.83■■□□□ 1.57
VRK3-225ENST00000601912 DLC1Q96QB1 1528 aa24.81■■□□□ 1.56
VRK3-225ENST00000601912 KDM4FA0A1W2PPD8 638 aa24.81■■□□□ 1.56
VRK3-225ENST00000601912 PRAM1Q96QH2 718 aa24.81■■□□□ 1.56
VRK3-225ENST00000601912 TBX22Q9Y458 520 aa24.81■■□□□ 1.56
VRK3-225ENST00000601912 MED14O60244 1454 aa24.8■■□□□ 1.56
VRK3-225ENST00000601912 SLC26A8Q96RN1 970 aa24.79■■□□□ 1.56
VRK3-225ENST00000601912 DIP2AQ14689 1571 aa24.78■■□□□ 1.56
VRK3-225ENST00000601912 EVC2Q86UK5 1308 aa24.77■■□□□ 1.56
VRK3-225ENST00000601912 SAFB2Q14151 953 aaKnown RBP eCLIP24.77■■□□□ 1.56
VRK3-225ENST00000601912 SIRT1Q96EB6 747 aa24.77■■□□□ 1.56
VRK3-225ENST00000601912 TECPR2O15040 1411 aa24.75■■□□□ 1.55
VRK3-225ENST00000601912 PUS7Q96PZ0 661 aaKnown RBP24.74■■□□□ 1.55
VRK3-225ENST00000601912 KNDC1Q76NI1 1749 aa24.73■■□□□ 1.55
VRK3-225ENST00000601912 FAM135BQ49AJ0 1406 aa24.73■■□□□ 1.55
VRK3-225ENST00000601912 WAPLQ7Z5K2 1190 aa24.71■■□□□ 1.55
VRK3-225ENST00000601912 MINK1Q8N4C8 1332 aaPredicted RBP24.71■■□□□ 1.55
VRK3-225ENST00000601912 PANK3Q9H999 370 aa24.7■■□□□ 1.54
VRK3-225ENST00000601912 CPS1P31327 1500 aa24.7■■□□□ 1.54
VRK3-225ENST00000601912 PIK3R4Q99570 1358 aa24.7■■□□□ 1.54
VRK3-225ENST00000601912 AMOTL2Q9Y2J4 779 aa24.68■■□□□ 1.54
VRK3-225ENST00000601912 TULP4Q9NRJ4 1543 aa24.67■■□□□ 1.54
VRK3-225ENST00000601912 PLEKHH1Q9ULM0 1364 aa24.67■■□□□ 1.54
VRK3-225ENST00000601912 NPHP4O75161 1426 aaPredicted RBP24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms