RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 ADGRF5Q8IZF2 1346 aa16.37■□□□□ 0.21
VRK3-223ENST00000601341 C3P01024 1663 aa16.37■□□□□ 0.21
VRK3-223ENST00000601341 PLPPR3Q6T4P5 718 aa16.36■□□□□ 0.21
VRK3-223ENST00000601341 NLRP1Q9C000 1473 aa16.36■□□□□ 0.21
VRK3-223ENST00000601341 HSPA5P11021 654 aaKnown RBP16.36■□□□□ 0.21
VRK3-223ENST00000601341 YTHDC1Q96MU7 727 aaKnown RBP16.36■□□□□ 0.21
VRK3-223ENST00000601341 A2ML1A8K2U0 1454 aa16.35■□□□□ 0.21
VRK3-223ENST00000601341 NRXN1Q9ULB1 1477 aa16.35■□□□□ 0.21
VRK3-223ENST00000601341 GPRASP1Q5JY77 1395 aa16.35■□□□□ 0.21
VRK3-223ENST00000601341 TRPM1Q7Z4N2 1603 aa16.34■□□□□ 0.21
VRK3-223ENST00000601341 ZFYVE9O95405 1425 aa16.34■□□□□ 0.21
VRK3-223ENST00000601341 IFT172Q9UG01 1749 aa16.34■□□□□ 0.21
VRK3-223ENST00000601341 NBPF1Q3BBV0 1214 aa16.34■□□□□ 0.21
VRK3-223ENST00000601341 NEXMIFQ5QGS0 1516 aa16.34■□□□□ 0.21
VRK3-223ENST00000601341 RIMS1Q86UR5 1692 aaKnown RBP16.34■□□□□ 0.21
VRK3-223ENST00000601341 HIRIP3Q9BW71 556 aaPredicted RBP16.33■□□□□ 0.21
VRK3-223ENST00000601341 USP47Q96K76 1375 aa16.33■□□□□ 0.2
VRK3-223ENST00000601341 PPLO60437 1756 aa16.33■□□□□ 0.2
VRK3-223ENST00000601341 HDGFP51858 240 aaKnown RBP16.32■□□□□ 0.2
VRK3-223ENST00000601341 NUTM2DQ5VT03 806 aaPredicted RBP16.31■□□□□ 0.2
VRK3-223ENST00000601341 PIK3C2GO75747 1445 aa16.31■□□□□ 0.2
VRK3-223ENST00000601341 CFAP70Q5T0N1 1121 aa16.31■□□□□ 0.2
VRK3-223ENST00000601341 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.31■□□□□ 0.2
VRK3-223ENST00000601341 KDM5AP29375 1690 aaKnown RBP16.3■□□□□ 0.2
VRK3-223ENST00000601341 C14orf93Q9H972 538 aaKnown RBP16.3■□□□□ 0.2
VRK3-223ENST00000601341 RIMS2Q9UQ26 1411 aa16.29■□□□□ 0.2
VRK3-223ENST00000601341 MYO5BQ9ULV0 1848 aa16.29■□□□□ 0.2
VRK3-223ENST00000601341 KIAA1210Q9ULL0 1709 aa16.28■□□□□ 0.2
VRK3-223ENST00000601341 TMEM2Q9UHN6 1383 aa16.28■□□□□ 0.2
VRK3-223ENST00000601341 LAMC1P11047 1609 aa16.28■□□□□ 0.2
VRK3-223ENST00000601341 THEMISQ8N1K5 641 aaPredicted RBP16.27■□□□□ 0.2
VRK3-223ENST00000601341 PTPRMP28827 1452 aa16.27■□□□□ 0.19
VRK3-223ENST00000601341 UBR1Q8IWV7 1749 aa16.26■□□□□ 0.19
VRK3-223ENST00000601341 ST20-MTHFSA0A0A6YYL1 179 aa16.25■□□□□ 0.19
VRK3-223ENST00000601341 SCAF11Q99590 1463 aaKnown RBP16.24■□□□□ 0.19
VRK3-223ENST00000601341 MYO3AQ8NEV4 1616 aa16.23■□□□□ 0.19
VRK3-223ENST00000601341 SETBP1Q9Y6X0 1596 aa16.23■□□□□ 0.19
VRK3-223ENST00000601341 EID1Q9Y6B2 187 aa16.23■□□□□ 0.19
VRK3-223ENST00000601341 CCER2I3L3R5 266 aa16.22■□□□□ 0.19
VRK3-223ENST00000601341 EIF3AQ14152 1382 aaKnown RBP16.22■□□□□ 0.19
VRK3-223ENST00000601341 SETD1BQ9UPS6 1966 aaKnown RBP16.21■□□□□ 0.19
VRK3-223ENST00000601341 CEP170BQ9Y4F5 1589 aaPredicted RBP16.21■□□□□ 0.18
VRK3-223ENST00000601341 TXNDC2Q86VQ3 553 aa16.21■□□□□ 0.18
VRK3-223ENST00000601341 SLIT1O75093 1534 aa16.2■□□□□ 0.18
VRK3-223ENST00000601341 ARHGAP23Q9P227 1491 aa16.2■□□□□ 0.18
VRK3-223ENST00000601341 TMEM132EQ6IEE7 984 aa16.2■□□□□ 0.18
VRK3-223ENST00000601341 ADGRB1O14514 1584 aa16.19■□□□□ 0.18
VRK3-223ENST00000601341 WASHC2AQ641Q2 1341 aa16.19■□□□□ 0.18
VRK3-223ENST00000601341 LTKP29376 864 aa16.18■□□□□ 0.18
VRK3-223ENST00000601341 SENP3Q9H4L4 574 aaPredicted RBP16.18■□□□□ 0.18
VRK3-223ENST00000601341 C11orf95C9JLR9 678 aaPredicted RBP16.18■□□□□ 0.18
VRK3-223ENST00000601341 IQGAP1P46940 1657 aa16.17■□□□□ 0.18
VRK3-223ENST00000601341 PLEKHG1Q9ULL1 1385 aa16.17■□□□□ 0.18
VRK3-223ENST00000601341 ALKQ9UM73 1620 aa16.17■□□□□ 0.18
VRK3-223ENST00000601341 KDM4FA0A1W2PPD8 638 aa16.17■□□□□ 0.18
VRK3-223ENST00000601341 DDX10Q13206 875 aaKnown RBP16.17■□□□□ 0.18
VRK3-223ENST00000601341 BCANQ96GW7 911 aa16.17■□□□□ 0.18
VRK3-223ENST00000601341 CCDC7Q96M83 1385 aa16.17■□□□□ 0.18
VRK3-223ENST00000601341 SLC24A1O60721 1099 aa16.16■□□□□ 0.18
VRK3-223ENST00000601341 TESK2Q96S53 571 aa16.16■□□□□ 0.18
VRK3-223ENST00000601341 TRAK1Q9UPV9 953 aa16.15■□□□□ 0.18
VRK3-223ENST00000601341 KIF7Q2M1P5 1343 aa16.15■□□□□ 0.18
VRK3-223ENST00000601341 ZNF142P52746 1687 aaPredicted RBP16.15■□□□□ 0.18
VRK3-223ENST00000601341 TMF1P82094 1093 aa16.13■□□□□ 0.17
VRK3-223ENST00000601341 ANKLE2Q86XL3 938 aa16.13■□□□□ 0.17
VRK3-223ENST00000601341 ANP32CO43423 234 aa16.13■□□□□ 0.17
VRK3-223ENST00000601341 CENPJQ9HC77 1338 aaPredicted RBP16.13■□□□□ 0.17
VRK3-223ENST00000601341 YTHDC2Q9H6S0 1430 aaKnown RBP16.13■□□□□ 0.17
VRK3-223ENST00000601341 ASXL1Q8IXJ9 1541 aa16.12■□□□□ 0.17
VRK3-223ENST00000601341 STK26Q9P289 416 aa16.12■□□□□ 0.17
VRK3-223ENST00000601341 NRXN3Q9Y4C0 1643 aa16.11■□□□□ 0.17
VRK3-223ENST00000601341 ADAMTS13Q76LX8 1427 aa16.11■□□□□ 0.17
VRK3-223ENST00000601341 LRPPRCP42704 1394 aaKnown RBP16.1■□□□□ 0.17
VRK3-223ENST00000601341 SBNO2Q9Y2G9 1366 aa16.1■□□□□ 0.17
VRK3-223ENST00000601341 CDCA8Q53HL2 280 aa16.1■□□□□ 0.17
VRK3-223ENST00000601341 POLR3GLQ9BT43 218 aa16.1■□□□□ 0.17
VRK3-223ENST00000601341 TBX22Q9Y458 520 aa16.1■□□□□ 0.17
VRK3-223ENST00000601341 METP08581 1390 aa16.09■□□□□ 0.17
VRK3-223ENST00000601341 ABCC11Q96J66 1382 aa16.09■□□□□ 0.17
VRK3-223ENST00000601341 MED14O60244 1454 aa16.08■□□□□ 0.16
VRK3-223ENST00000601341 DISP3Q9P2K9 1392 aa16.08■□□□□ 0.16
VRK3-223ENST00000601341 POLR1AO95602 1720 aaPredicted RBP16.08■□□□□ 0.16
VRK3-223ENST00000601341 SLC26A8Q96RN1 970 aa16.08■□□□□ 0.16
VRK3-223ENST00000601341 SETD1AO15047 1707 aaKnown RBP16.07■□□□□ 0.16
VRK3-223ENST00000601341 POGKQ9P215 609 aa16.06■□□□□ 0.16
VRK3-223ENST00000601341 SIRT1Q96EB6 747 aa16.05■□□□□ 0.16
VRK3-223ENST00000601341 PRAM1Q96QH2 718 aa16.05■□□□□ 0.16
VRK3-223ENST00000601341 DLC1Q96QB1 1528 aa16.05■□□□□ 0.16
VRK3-223ENST00000601341 DIP2AQ14689 1571 aa16.04■□□□□ 0.16
VRK3-223ENST00000601341 ARHGEF28Q8N1W1 1705 aaKnown RBP16.04■□□□□ 0.16
VRK3-223ENST00000601341 TECPR2O15040 1411 aa16.03■□□□□ 0.16
VRK3-223ENST00000601341 PIK3R4Q99570 1358 aa16.02■□□□□ 0.15
VRK3-223ENST00000601341 SAFB2Q14151 953 aaKnown RBP eCLIP16.02■□□□□ 0.15
VRK3-223ENST00000601341 SUPT16HQ9Y5B9 1047 aaKnown RBP16.02■□□□□ 0.15
VRK3-223ENST00000601341 NPHP4O75161 1426 aaPredicted RBP16.02■□□□□ 0.15
VRK3-223ENST00000601341 EVC2Q86UK5 1308 aa16.02■□□□□ 0.15
VRK3-223ENST00000601341 FAM135BQ49AJ0 1406 aa16.01■□□□□ 0.15
VRK3-223ENST00000601341 QRICH2Q9H0J4 1663 aa16■□□□□ 0.15
VRK3-223ENST00000601341 NCKAP5LQ9HCH0 1330 aa16■□□□□ 0.15
VRK3-223ENST00000601341 AEBP2Q6ZN18 517 aaPredicted RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms