RNA–Protein interactions for RNA: ENST00000599144.5

IRF3-222, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,117 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-222	ENST00000599144	CHGA	P10645	457 aa	Known RBP	29.77	■■■□□ 2.36
IRF3-222	ENST00000599144	NUTM2D	Q5VT03	806 aa	Predicted RBP	29.77	■■■□□ 2.36
IRF3-222	ENST00000599144	PPP1R15A	O75807	674 aa	Predicted RBP	29.76	■■■□□ 2.35
IRF3-222	ENST00000599144	ZFYVE9	O95405	1425 aa		29.76	■■■□□ 2.35
IRF3-222	ENST00000599144	RIMS2	Q9UQ26	1411 aa		29.76	■■■□□ 2.35
IRF3-222	ENST00000599144	ROBO1	Q9Y6N7	1651 aa		29.74	■■■□□ 2.35
IRF3-222	ENST00000599144	NWD1	Q149M9	1564 aa		29.73	■■■□□ 2.35
IRF3-222	ENST00000599144	NKTR	P30414	1462 aa	Known RBP	29.73	■■■□□ 2.35
IRF3-222	ENST00000599144	RPRD2	Q5VT52	1461 aa	Known RBP	29.73	■■■□□ 2.35
IRF3-222	ENST00000599144	POTEA	Q6S8J7	498 aa		29.72	■■■□□ 2.35
IRF3-222	ENST00000599144	PLEKHG1	Q9ULL1	1385 aa		29.72	■■■□□ 2.35
IRF3-222	ENST00000599144	MSH6	P52701	1360 aa		29.71	■■■□□ 2.35
IRF3-222	ENST00000599144	SLAIN2	Q9P270	581 aa		29.68	■■■□□ 2.34
IRF3-222	ENST00000599144	GCC2	Q8IWJ2	1684 aa		29.67	■■■□□ 2.34
IRF3-222	ENST00000599144	ITGAE	P38570	1179 aa		29.66	■■■□□ 2.34
IRF3-222	ENST00000599144	TMEM131L	A2VDJ0	1609 aa		29.66	■■■□□ 2.34
IRF3-222	ENST00000599144	MYO5B	Q9ULV0	1848 aa		29.66	■■■□□ 2.34
IRF3-222	ENST00000599144	PPARGC1B	Q86YN6	1023 aa	Known RBP	29.65	■■■□□ 2.34
IRF3-222	ENST00000599144	UNC13B	O14795	1591 aa		29.63	■■■□□ 2.33
IRF3-222	ENST00000599144	TBX22	Q9Y458	520 aa		29.62	■■■□□ 2.33
IRF3-222	ENST00000599144	HDGF	P51858	240 aa	Known RBP	29.61	■■■□□ 2.33
IRF3-222	ENST00000599144	C14orf37	Q86TY3	774 aa		29.61	■■■□□ 2.33
IRF3-222	ENST00000599144	ADAMTS13	Q76LX8	1427 aa		29.61	■■■□□ 2.33
IRF3-222	ENST00000599144		E9PCH4	1651 aa		29.59	■■■□□ 2.33
IRF3-222	ENST00000599144	NUP155	O75694	1391 aa		29.57	■■■□□ 2.32
IRF3-222	ENST00000599144	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	29.57	■■■□□ 2.32
IRF3-222	ENST00000599144	ROCK1	Q13464	1354 aa		29.55	■■■□□ 2.32
IRF3-222	ENST00000599144	CHD2	O14647	1828 aa	Known RBP	29.55	■■■□□ 2.32
IRF3-222	ENST00000599144	PHLPP1	O60346	1717 aa		29.54	■■■□□ 2.32
IRF3-222	ENST00000599144	JCAD	Q9P266	1359 aa		29.53	■■■□□ 2.32
IRF3-222	ENST00000599144	IQGAP3	Q86VI3	1631 aa		29.5	■■■□□ 2.31
IRF3-222	ENST00000599144	PTPRU	Q92729	1446 aa		29.5	■■■□□ 2.31
IRF3-222	ENST00000599144	AMOTL2	Q9Y2J4	779 aa		29.49	■■■□□ 2.31
IRF3-222	ENST00000599144	COL16A1	Q07092	1604 aa	Predicted RBP	29.48	■■■□□ 2.31
IRF3-222	ENST00000599144	LRP6	O75581	1613 aa		29.46	■■■□□ 2.31
IRF3-222	ENST00000599144	ATF3	P18847	181 aa		29.46	■■■□□ 2.31
IRF3-222	ENST00000599144	C19orf44	Q9H6X5	657 aa		29.46	■■■□□ 2.31
IRF3-222	ENST00000599144	NCOA3	Q9Y6Q9	1424 aa		29.45	■■■□□ 2.3
IRF3-222	ENST00000599144	CADPS2	Q86UW7	1296 aa		29.44	■■■□□ 2.3
IRF3-222	ENST00000599144	DIP2A	Q14689	1571 aa		29.43	■■■□□ 2.3
IRF3-222	ENST00000599144	PIK3R4	Q99570	1358 aa		29.42	■■■□□ 2.3
IRF3-222	ENST00000599144	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	29.42	■■■□□ 2.3
IRF3-222	ENST00000599144	TRPM2	O94759	1503 aa		29.4	■■■□□ 2.3
IRF3-222	ENST00000599144	ZNF326	Q5BKZ1	582 aa	Known RBP	29.4	■■■□□ 2.3
IRF3-222	ENST00000599144	MEX3C	Q5U5Q3	659 aa	Known RBP	29.4	■■■□□ 2.3
IRF3-222	ENST00000599144	SETD1A	O15047	1707 aa	Known RBP	29.4	■■■□□ 2.3
IRF3-222	ENST00000599144	BRINP3	Q76B58	766 aa		29.39	■■■□□ 2.3
IRF3-222	ENST00000599144	MET	P08581	1390 aa		29.36	■■■□□ 2.29
IRF3-222	ENST00000599144	NUTM2B	A6NNL0	878 aa	Predicted RBP	29.35	■■■□□ 2.29
IRF3-222	ENST00000599144	NUTM2E	B1AL46	878 aa	Predicted RBP	29.35	■■■□□ 2.29
IRF3-222	ENST00000599144	NUTM2A	Q8IVF1	878 aa	Predicted RBP	29.35	■■■□□ 2.29
IRF3-222	ENST00000599144	SPATA31A6	Q5VVP1	1343 aa		29.35	■■■□□ 2.29
IRF3-222	ENST00000599144	AHDC1	Q5TGY3	1603 aa	Predicted RBP	29.34	■■■□□ 2.29
IRF3-222	ENST00000599144	NRXN3	Q9Y4C0	1643 aa		29.34	■■■□□ 2.29
IRF3-222	ENST00000599144	TRIM52	Q96A61	297 aa		29.32	■■■□□ 2.28
IRF3-222	ENST00000599144	DDX17	Q92841	729 aa	Known RBP	29.3	■■■□□ 2.28
IRF3-222	ENST00000599144	SETBP1	Q9Y6X0	1596 aa		29.28	■■■□□ 2.28
IRF3-222	ENST00000599144	XRN1	Q8IZH2	1706 aa	Known RBP	29.28	■■■□□ 2.28
IRF3-222	ENST00000599144	MST1R	Q04912	1400 aa		29.27	■■■□□ 2.28
IRF3-222	ENST00000599144	ASXL1	Q8IXJ9	1541 aa		29.26	■■■□□ 2.27
IRF3-222	ENST00000599144	SPHKAP	Q2M3C7	1700 aa		29.26	■■■□□ 2.27
IRF3-222	ENST00000599144	ZNF772	Q68DY9	489 aa	Predicted RBP	29.25	■■■□□ 2.27
IRF3-222	ENST00000599144	CLTCL1	P53675	1640 aa		29.23	■■■□□ 2.27
IRF3-222	ENST00000599144	DCC	P43146	1447 aa		29.23	■■■□□ 2.27
IRF3-222	ENST00000599144	SHPRH	Q149N8	1683 aa		29.23	■■■□□ 2.27
IRF3-222	ENST00000599144	NEXMIF	Q5QGS0	1516 aa		29.21	■■■□□ 2.27
IRF3-222	ENST00000599144	NAIP	Q13075	1403 aa		29.18	■■■□□ 2.26
IRF3-222	ENST00000599144	ADGRL3	Q9HAR2	1447 aa		29.18	■■■□□ 2.26
IRF3-222	ENST00000599144	AFF2	P51816	1311 aa		29.18	■■■□□ 2.26
IRF3-222	ENST00000599144	UPF1	Q92900	1129 aa	Known RBP eCLIP	29.17	■■■□□ 2.26
IRF3-222	ENST00000599144	SETD5	Q9C0A6	1442 aa		29.17	■■■□□ 2.26
IRF3-222	ENST00000599144	RXRB	P28702	533 aa		29.16	■■■□□ 2.26
IRF3-222	ENST00000599144	RRBP1	Q9P2E9	1410 aa	Known RBP	29.12	■■■□□ 2.25
IRF3-222	ENST00000599144	LRRC59	Q96AG4	307 aa	Known RBP	29.12	■■■□□ 2.25
IRF3-222	ENST00000599144	C8orf37	Q96NL8	207 aa		29.12	■■■□□ 2.25
IRF3-222	ENST00000599144	PNPLA6	Q8IY17	1366 aa		29.12	■■■□□ 2.25
IRF3-222	ENST00000599144	NHSL1	Q5SYE7	1610 aa		29.11	■■■□□ 2.25
IRF3-222	ENST00000599144	ROBO2	Q9HCK4	1378 aa		29.11	■■■□□ 2.25
IRF3-222	ENST00000599144	NALCN	Q8IZF0	1738 aa		29.11	■■■□□ 2.25
IRF3-222	ENST00000599144	ORAI2	Q96SN7	254 aa		29.09	■■■□□ 2.25
IRF3-222	ENST00000599144	C1orf167	Q5SNV9	1468 aa		29.09	■■■□□ 2.25
IRF3-222	ENST00000599144	ADAMTS2	O95450	1211 aa		29.07	■■■□□ 2.24
IRF3-222	ENST00000599144	FOXD1	Q16676	465 aa		29.05	■■■□□ 2.24
IRF3-222	ENST00000599144	VGF	O15240	615 aa	Predicted RBP	29.04	■■■□□ 2.24
IRF3-222	ENST00000599144	SLC4A1AP	Q9BWU0	796 aa	Known RBP	29.04	■■■□□ 2.24
IRF3-222	ENST00000599144	QTRT2	Q9H974	415 aa	Known RBP	29.02	■■■□□ 2.24
IRF3-222	ENST00000599144	PTCH1	Q13635	1447 aa		29.02	■■■□□ 2.24
IRF3-222	ENST00000599144	KIF1B	O60333	1816 aa		29	■■■□□ 2.23
IRF3-222	ENST00000599144	RGS12	O14924	1447 aa		29	■■■□□ 2.23
IRF3-222	ENST00000599144	HFM1	A2PYH4	1435 aa		28.98	■■■□□ 2.23
IRF3-222	ENST00000599144	NGLY1	Q96IV0	654 aa		28.98	■■■□□ 2.23
IRF3-222	ENST00000599144	CDK12	Q9NYV4	1490 aa	Predicted RBP	28.97	■■■□□ 2.23
IRF3-222	ENST00000599144	SOS2	Q07890	1332 aa	Predicted RBP	28.95	■■■□□ 2.23
IRF3-222	ENST00000599144	RBM6	P78332	1123 aa	Known RBP	28.95	■■■□□ 2.22
IRF3-222	ENST00000599144	RPGRIP1L	Q68CZ1	1315 aa		28.94	■■■□□ 2.22
IRF3-222	ENST00000599144	ADGRF5	Q8IZF2	1346 aa		28.93	■■■□□ 2.22
IRF3-222	ENST00000599144	XPC	Q01831	940 aa	Predicted RBP	28.91	■■■□□ 2.22
IRF3-222	ENST00000599144	RGL3	Q3MIN7	710 aa		28.91	■■■□□ 2.22
IRF3-222	ENST00000599144	STK26	Q9P289	416 aa		28.91	■■■□□ 2.22
IRF3-222	ENST00000599144	NUTM2F	A1L443	756 aa		28.9	■■■□□ 2.22

Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms