RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 BCANQ96GW7 911 aa19.35■□□□□ 0.69
TRIM28-212ENST00000597995 RGS17Q9UGC6 210 aaPredicted RBP19.34■□□□□ 0.69
TRIM28-212ENST00000597995 NWD1Q149M9 1564 aa19.34■□□□□ 0.69
TRIM28-212ENST00000597995 ZFYVE9O95405 1425 aa19.33■□□□□ 0.68
TRIM28-212ENST00000597995 PLEKHG1Q9ULL1 1385 aa19.32■□□□□ 0.68
TRIM28-212ENST00000597995 RBM33Q96EV2 1170 aaKnown RBP19.32■□□□□ 0.68
TRIM28-212ENST00000597995 MSH6P52701 1360 aa19.31■□□□□ 0.68
TRIM28-212ENST00000597995 TBX22Q9Y458 520 aa19.3■□□□□ 0.68
TRIM28-212ENST00000597995 RIMS2Q9UQ26 1411 aa19.3■□□□□ 0.68
TRIM28-212ENST00000597995 PPP1R15AO75807 674 aaPredicted RBP19.29■□□□□ 0.68
TRIM28-212ENST00000597995 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.29■□□□□ 0.68
TRIM28-212ENST00000597995 ROBO1Q9Y6N7 1651 aa19.29■□□□□ 0.68
TRIM28-212ENST00000597995 TMEM131LA2VDJ0 1609 aa19.29■□□□□ 0.68
TRIM28-212ENST00000597995 SLAIN2Q9P270 581 aa19.28■□□□□ 0.68
TRIM28-212ENST00000597995 ROCK1Q13464 1354 aa19.28■□□□□ 0.68
TRIM28-212ENST00000597995 UNC13BO14795 1591 aa19.27■□□□□ 0.68
TRIM28-212ENST00000597995 GCC2Q8IWJ2 1684 aa19.27■□□□□ 0.68
TRIM28-212ENST00000597995 CHD2O14647 1828 aaKnown RBP19.27■□□□□ 0.68
TRIM28-212ENST00000597995 MYO5BQ9ULV0 1848 aa19.27■□□□□ 0.68
TRIM28-212ENST00000597995 NCOA3Q9Y6Q9 1424 aa19.26■□□□□ 0.67
TRIM28-212ENST00000597995 CHGAP10645 457 aaKnown RBP19.24■□□□□ 0.67
TRIM28-212ENST00000597995 PIK3R4Q99570 1358 aa19.21■□□□□ 0.67
TRIM28-212ENST00000597995 E9PCH4 1651 aa19.21■□□□□ 0.67
TRIM28-212ENST00000597995 POTEAQ6S8J7 498 aa19.21■□□□□ 0.67
TRIM28-212ENST00000597995 ADAMTS13Q76LX8 1427 aa19.21■□□□□ 0.67
TRIM28-212ENST00000597995 JCADQ9P266 1359 aa19.2■□□□□ 0.66
TRIM28-212ENST00000597995 IQGAP3Q86VI3 1631 aa19.2■□□□□ 0.66
TRIM28-212ENST00000597995 DIP2AQ14689 1571 aa19.19■□□□□ 0.66
TRIM28-212ENST00000597995 NUP155O75694 1391 aa19.19■□□□□ 0.66
TRIM28-212ENST00000597995 PHLPP1O60346 1717 aa19.18■□□□□ 0.66
TRIM28-212ENST00000597995 C19orf44Q9H6X5 657 aa19.18■□□□□ 0.66
TRIM28-212ENST00000597995 NUTM2DQ5VT03 806 aaPredicted RBP19.17■□□□□ 0.66
TRIM28-212ENST00000597995 C14orf37Q86TY3 774 aa19.17■□□□□ 0.66
TRIM28-212ENST00000597995 CADPS2Q86UW7 1296 aa19.17■□□□□ 0.66
TRIM28-212ENST00000597995 ATF3P18847 181 aa19.14■□□□□ 0.65
TRIM28-212ENST00000597995 AMOTL2Q9Y2J4 779 aa19.13■□□□□ 0.65
TRIM28-212ENST00000597995 TRPM2O94759 1503 aa19.13■□□□□ 0.65
TRIM28-212ENST00000597995 COL16A1Q07092 1604 aaPredicted RBP19.13■□□□□ 0.65
TRIM28-212ENST00000597995 SPATA31A6Q5VVP1 1343 aa19.12■□□□□ 0.65
TRIM28-212ENST00000597995 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.11■□□□□ 0.65
TRIM28-212ENST00000597995 ITGAEP38570 1179 aa19.11■□□□□ 0.65
TRIM28-212ENST00000597995 PPARGC1BQ86YN6 1023 aaKnown RBP19.1■□□□□ 0.65
TRIM28-212ENST00000597995 PTPRUQ92729 1446 aa19.09■□□□□ 0.65
TRIM28-212ENST00000597995 AHDC1Q5TGY3 1603 aaPredicted RBP19.09■□□□□ 0.65
TRIM28-212ENST00000597995 DCCP43146 1447 aa19.08■□□□□ 0.64
TRIM28-212ENST00000597995 SETBP1Q9Y6X0 1596 aa19.06■□□□□ 0.64
TRIM28-212ENST00000597995 ZNF772Q68DY9 489 aaPredicted RBP19.05■□□□□ 0.64
TRIM28-212ENST00000597995 BRINP3Q76B58 766 aa19.05■□□□□ 0.64
TRIM28-212ENST00000597995 SPHKAPQ2M3C7 1700 aa19.05■□□□□ 0.64
TRIM28-212ENST00000597995 LRP6O75581 1613 aa19.04■□□□□ 0.64
TRIM28-212ENST00000597995 ZNF326Q5BKZ1 582 aaKnown RBP19.04■□□□□ 0.64
TRIM28-212ENST00000597995 NRXN3Q9Y4C0 1643 aa19.03■□□□□ 0.64
TRIM28-212ENST00000597995 MEX3CQ5U5Q3 659 aaKnown RBP19.03■□□□□ 0.64
TRIM28-212ENST00000597995 SHPRHQ149N8 1683 aa19.03■□□□□ 0.64
TRIM28-212ENST00000597995 XRN1Q8IZH2 1706 aaKnown RBP19.03■□□□□ 0.64
TRIM28-212ENST00000597995 METP08581 1390 aa19.01■□□□□ 0.63
TRIM28-212ENST00000597995 MST1RQ04912 1400 aa18.99■□□□□ 0.63
TRIM28-212ENST00000597995 ASXL1Q8IXJ9 1541 aa18.98■□□□□ 0.63
TRIM28-212ENST00000597995 SETD5Q9C0A6 1442 aa18.98■□□□□ 0.63
TRIM28-212ENST00000597995 NEXMIFQ5QGS0 1516 aa18.96■□□□□ 0.63
TRIM28-212ENST00000597995 LRRC59Q96AG4 307 aaKnown RBP18.96■□□□□ 0.63
TRIM28-212ENST00000597995 ADGRL3Q9HAR2 1447 aa18.96■□□□□ 0.63
TRIM28-212ENST00000597995 RRBP1Q9P2E9 1410 aaKnown RBP18.96■□□□□ 0.63
TRIM28-212ENST00000597995 CLTCL1P53675 1640 aa18.96■□□□□ 0.63
TRIM28-212ENST00000597995 SETD1AO15047 1707 aaKnown RBP18.95■□□□□ 0.62
TRIM28-212ENST00000597995 NAIPQ13075 1403 aa18.94■□□□□ 0.62
TRIM28-212ENST00000597995 NUTM2BA6NNL0 878 aaPredicted RBP18.94■□□□□ 0.62
TRIM28-212ENST00000597995 NUTM2EB1AL46 878 aaPredicted RBP18.94■□□□□ 0.62
TRIM28-212ENST00000597995 RXRBP28702 533 aa18.94■□□□□ 0.62
TRIM28-212ENST00000597995 NUTM2AQ8IVF1 878 aaPredicted RBP18.94■□□□□ 0.62
TRIM28-212ENST00000597995 NHSL1Q5SYE7 1610 aa18.93■□□□□ 0.62
TRIM28-212ENST00000597995 VGFO15240 615 aaPredicted RBP18.93■□□□□ 0.62
TRIM28-212ENST00000597995 TRIM52Q96A61 297 aa18.92■□□□□ 0.62
TRIM28-212ENST00000597995 KIF1BO60333 1816 aa18.92■□□□□ 0.62
TRIM28-212ENST00000597995 UPF1Q92900 1129 aaKnown RBP eCLIP18.91■□□□□ 0.62
TRIM28-212ENST00000597995 RPGRIP1LQ68CZ1 1315 aa18.91■□□□□ 0.62
TRIM28-212ENST00000597995 CDK12Q9NYV4 1490 aaPredicted RBP18.9■□□□□ 0.62
TRIM28-212ENST00000597995 AFF2P51816 1311 aa18.9■□□□□ 0.62
TRIM28-212ENST00000597995 PTCH1Q13635 1447 aa18.89■□□□□ 0.61
TRIM28-212ENST00000597995 NALCNQ8IZF0 1738 aa18.88■□□□□ 0.61
TRIM28-212ENST00000597995 PNPLA6Q8IY17 1366 aa18.88■□□□□ 0.61
TRIM28-212ENST00000597995 C1orf167Q5SNV9 1468 aa18.87■□□□□ 0.61
TRIM28-212ENST00000597995 PRAG1Q86YV5 1406 aa18.87■□□□□ 0.61
TRIM28-212ENST00000597995 DDX17Q92841 729 aaKnown RBP18.87■□□□□ 0.61
TRIM28-212ENST00000597995 HFM1A2PYH4 1435 aa18.86■□□□□ 0.61
TRIM28-212ENST00000597995 ROBO2Q9HCK4 1378 aa18.85■□□□□ 0.61
TRIM28-212ENST00000597995 SLC4A1APQ9BWU0 796 aaKnown RBP18.85■□□□□ 0.61
TRIM28-212ENST00000597995 SOS2Q07890 1332 aaPredicted RBP18.83■□□□□ 0.61
TRIM28-212ENST00000597995 LAMC1P11047 1609 aa18.83■□□□□ 0.61
TRIM28-212ENST00000597995 C8orf37Q96NL8 207 aa18.83■□□□□ 0.6
TRIM28-212ENST00000597995 QTRT2Q9H974 415 aaKnown RBP18.83■□□□□ 0.6
TRIM28-212ENST00000597995 RBM6P78332 1123 aaKnown RBP18.82■□□□□ 0.6
TRIM28-212ENST00000597995 ORAI2Q96SN7 254 aa18.81■□□□□ 0.6
TRIM28-212ENST00000597995 NGLY1Q96IV0 654 aa18.79■□□□□ 0.6
TRIM28-212ENST00000597995 PPLO60437 1756 aa18.78■□□□□ 0.6
TRIM28-212ENST00000597995 ADAMTS2O95450 1211 aa18.77■□□□□ 0.6
TRIM28-212ENST00000597995 RGS12O14924 1447 aa18.75■□□□□ 0.59
TRIM28-212ENST00000597995 FNBP4Q8N3X1 1017 aaPredicted RBP18.74■□□□□ 0.59
TRIM28-212ENST00000597995 NPHP3Q7Z494 1330 aa18.74■□□□□ 0.59
TRIM28-212ENST00000597995 USP21Q9UK80 565 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms