RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 MED1Q15648 1581 aaPredicted RBP20.83■□□□□ 0.92
TRIM28-211ENST00000597968 NWD1Q149M9 1564 aa20.82■□□□□ 0.92
TRIM28-211ENST00000597968 TMEM94Q12767 1356 aa20.82■□□□□ 0.92
TRIM28-211ENST00000597968 SLC26A8Q96RN1 970 aa20.81■□□□□ 0.92
TRIM28-211ENST00000597968 TMEM131LA2VDJ0 1609 aa20.81■□□□□ 0.92
TRIM28-211ENST00000597968 RIMS2Q9UQ26 1411 aa20.8■□□□□ 0.92
TRIM28-211ENST00000597968 TBX22Q9Y458 520 aa20.79■□□□□ 0.92
TRIM28-211ENST00000597968 NUP155O75694 1391 aa20.79■□□□□ 0.92
TRIM28-211ENST00000597968 NCOA3Q9Y6Q9 1424 aa20.78■□□□□ 0.92
TRIM28-211ENST00000597968 XIRP1Q702N8 1843 aaKnown RBP20.78■□□□□ 0.92
TRIM28-211ENST00000597968 PPP1R15AO75807 674 aaPredicted RBP20.78■□□□□ 0.92
TRIM28-211ENST00000597968 PROSER2Q86WR7 435 aaPredicted RBP20.78■□□□□ 0.92
TRIM28-211ENST00000597968 E9PCH4 1651 aa20.77■□□□□ 0.92
TRIM28-211ENST00000597968 PIK3R4Q99570 1358 aa20.77■□□□□ 0.92
TRIM28-211ENST00000597968 BCANQ96GW7 911 aa20.77■□□□□ 0.92
TRIM28-211ENST00000597968 MSH6P52701 1360 aa20.74■□□□□ 0.91
TRIM28-211ENST00000597968 DIP2AQ14689 1571 aa20.74■□□□□ 0.91
TRIM28-211ENST00000597968 PHF23Q9BUL5 403 aaPredicted RBP20.73■□□□□ 0.91
TRIM28-211ENST00000597968 RRBP1Q9P2E9 1410 aaKnown RBP20.72■□□□□ 0.91
TRIM28-211ENST00000597968 CHD2O14647 1828 aaKnown RBP20.7■□□□□ 0.9
TRIM28-211ENST00000597968 CHGAP10645 457 aaKnown RBP20.7■□□□□ 0.9
TRIM28-211ENST00000597968 ITGAEP38570 1179 aa20.69■□□□□ 0.9
TRIM28-211ENST00000597968 MYO5BQ9ULV0 1848 aa20.69■□□□□ 0.9
TRIM28-211ENST00000597968 ADAMTS13Q76LX8 1427 aa20.69■□□□□ 0.9
TRIM28-211ENST00000597968 PPARGC1BQ86YN6 1023 aaKnown RBP20.68■□□□□ 0.9
TRIM28-211ENST00000597968 SLAIN2Q9P270 581 aa20.66■□□□□ 0.9
TRIM28-211ENST00000597968 ROBO1Q9Y6N7 1651 aa20.64■□□□□ 0.9
TRIM28-211ENST00000597968 TRPM2O94759 1503 aa20.64■□□□□ 0.9
TRIM28-211ENST00000597968 NAIPQ13075 1403 aa20.62■□□□□ 0.89
TRIM28-211ENST00000597968 SPHKAPQ2M3C7 1700 aa20.62■□□□□ 0.89
TRIM28-211ENST00000597968 CADPS2Q86UW7 1296 aa20.62■□□□□ 0.89
TRIM28-211ENST00000597968 C19orf44Q9H6X5 657 aa20.62■□□□□ 0.89
TRIM28-211ENST00000597968 SETBP1Q9Y6X0 1596 aa20.6■□□□□ 0.89
TRIM28-211ENST00000597968 RBM33Q96EV2 1170 aaKnown RBP20.6■□□□□ 0.89
TRIM28-211ENST00000597968 SENP3Q9H4L4 574 aaPredicted RBP20.59■□□□□ 0.89
TRIM28-211ENST00000597968 AMOTL2Q9Y2J4 779 aa20.58■□□□□ 0.89
TRIM28-211ENST00000597968 HFM1A2PYH4 1435 aa20.58■□□□□ 0.88
TRIM28-211ENST00000597968 DCCP43146 1447 aa20.58■□□□□ 0.88
TRIM28-211ENST00000597968 ATF3P18847 181 aa20.57■□□□□ 0.88
TRIM28-211ENST00000597968 JCADQ9P266 1359 aa20.57■□□□□ 0.88
TRIM28-211ENST00000597968 NUTM2DQ5VT03 806 aaPredicted RBP20.56■□□□□ 0.88
TRIM28-211ENST00000597968 C14orf37Q86TY3 774 aa20.56■□□□□ 0.88
TRIM28-211ENST00000597968 ZNF326Q5BKZ1 582 aaKnown RBP20.55■□□□□ 0.88
TRIM28-211ENST00000597968 RGS17Q9UGC6 210 aaPredicted RBP20.53■□□□□ 0.88
TRIM28-211ENST00000597968 PTPRUQ92729 1446 aa20.53■□□□□ 0.88
TRIM28-211ENST00000597968 NRXN3Q9Y4C0 1643 aa20.52■□□□□ 0.88
TRIM28-211ENST00000597968 PHLPP1O60346 1717 aa20.51■□□□□ 0.87
TRIM28-211ENST00000597968 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.51■□□□□ 0.87
TRIM28-211ENST00000597968 SPATA31A6Q5VVP1 1343 aa20.51■□□□□ 0.87
TRIM28-211ENST00000597968 RPGRIP1LQ68CZ1 1315 aa20.51■□□□□ 0.87
TRIM28-211ENST00000597968 ACIN1Q9UKV3 1341 aaKnown RBP20.51■□□□□ 0.87
TRIM28-211ENST00000597968 XRN1Q8IZH2 1706 aaKnown RBP20.5■□□□□ 0.87
TRIM28-211ENST00000597968 CLTCL1P53675 1640 aa20.5■□□□□ 0.87
TRIM28-211ENST00000597968 AHDC1Q5TGY3 1603 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-211ENST00000597968 NEXMIFQ5QGS0 1516 aa20.5■□□□□ 0.87
TRIM28-211ENST00000597968 VGFO15240 615 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-211ENST00000597968 COL16A1Q07092 1604 aaPredicted RBP20.48■□□□□ 0.87
TRIM28-211ENST00000597968 KIF1BO60333 1816 aa20.47■□□□□ 0.87
TRIM28-211ENST00000597968 METP08581 1390 aa20.46■□□□□ 0.87
TRIM28-211ENST00000597968 TRIM52Q96A61 297 aa20.46■□□□□ 0.87
TRIM28-211ENST00000597968 SLC4A1APQ9BWU0 796 aaKnown RBP20.46■□□□□ 0.87
TRIM28-211ENST00000597968 PRAG1Q86YV5 1406 aa20.44■□□□□ 0.86
TRIM28-211ENST00000597968 BRINP3Q76B58 766 aa20.43■□□□□ 0.86
TRIM28-211ENST00000597968 PTCH1Q13635 1447 aa20.43■□□□□ 0.86
TRIM28-211ENST00000597968 ADGRL3Q9HAR2 1447 aa20.43■□□□□ 0.86
TRIM28-211ENST00000597968 MST1RQ04912 1400 aa20.41■□□□□ 0.86
TRIM28-211ENST00000597968 SHPRHQ149N8 1683 aa20.4■□□□□ 0.86
TRIM28-211ENST00000597968 POTEAQ6S8J7 498 aa20.4■□□□□ 0.86
TRIM28-211ENST00000597968 SETD5Q9C0A6 1442 aa20.39■□□□□ 0.85
TRIM28-211ENST00000597968 ASXL1Q8IXJ9 1541 aa20.38■□□□□ 0.85
TRIM28-211ENST00000597968 ZNF772Q68DY9 489 aaPredicted RBP20.37■□□□□ 0.85
TRIM28-211ENST00000597968 LRRC59Q96AG4 307 aaKnown RBP20.37■□□□□ 0.85
TRIM28-211ENST00000597968 CCDC144AA2RUR9 1427 aa20.35■□□□□ 0.85
TRIM28-211ENST00000597968 NHSL1Q5SYE7 1610 aa20.34■□□□□ 0.85
TRIM28-211ENST00000597968 SETD1AO15047 1707 aaKnown RBP20.33■□□□□ 0.85
TRIM28-211ENST00000597968 MEX3CQ5U5Q3 659 aaKnown RBP20.33■□□□□ 0.85
TRIM28-211ENST00000597968 LRP6O75581 1613 aa20.33■□□□□ 0.84
TRIM28-211ENST00000597968 ANKRD30BQ9BXX2 1392 aa20.33■□□□□ 0.84
TRIM28-211ENST00000597968 PPLO60437 1756 aa20.31■□□□□ 0.84
TRIM28-211ENST00000597968 NALCNQ8IZF0 1738 aa20.31■□□□□ 0.84
TRIM28-211ENST00000597968 ROBO2Q9HCK4 1378 aa20.31■□□□□ 0.84
TRIM28-211ENST00000597968 C1orf167Q5SNV9 1468 aa20.3■□□□□ 0.84
TRIM28-211ENST00000597968 MPHOSPH9Q99550 1183 aa20.3■□□□□ 0.84
TRIM28-211ENST00000597968 SPATA31E1Q6ZUB1 1445 aa20.28■□□□□ 0.84
TRIM28-211ENST00000597968 LAMC1P11047 1609 aa20.28■□□□□ 0.84
TRIM28-211ENST00000597968 TECPR2O15040 1411 aa20.27■□□□□ 0.83
TRIM28-211ENST00000597968 SOS2Q07890 1332 aaPredicted RBP20.25■□□□□ 0.83
TRIM28-211ENST00000597968 PNPLA6Q8IY17 1366 aa20.24■□□□□ 0.83
TRIM28-211ENST00000597968 CDK12Q9NYV4 1490 aaPredicted RBP20.24■□□□□ 0.83
TRIM28-211ENST00000597968 FOXD1Q16676 465 aa20.23■□□□□ 0.83
TRIM28-211ENST00000597968 ABCC11Q96J66 1382 aa20.22■□□□□ 0.83
TRIM28-211ENST00000597968 CDC42BPGQ6DT37 1551 aa20.22■□□□□ 0.83
TRIM28-211ENST00000597968 ADGRF5Q8IZF2 1346 aa20.22■□□□□ 0.83
TRIM28-211ENST00000597968 LRPPRCP42704 1394 aaKnown RBP20.21■□□□□ 0.83
TRIM28-211ENST00000597968 PIK3C2GO75747 1445 aa20.21■□□□□ 0.83
TRIM28-211ENST00000597968 RXRBP28702 533 aa20.21■□□□□ 0.83
TRIM28-211ENST00000597968 SIRT1Q96EB6 747 aa20.21■□□□□ 0.83
TRIM28-211ENST00000597968 NUTM2BA6NNL0 878 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-211ENST00000597968 NUTM2EB1AL46 878 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-211ENST00000597968 RGL3Q3MIN7 710 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms