RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 SLAIN2Q9P270 581 aa25.62■■□□□ 1.69
SHKBP1-215ENST00000597649 ZFYVE9O95405 1425 aa25.61■■□□□ 1.69
SHKBP1-215ENST00000597649 FAM50AQ14320 339 aaKnown RBP25.6■■□□□ 1.69
SHKBP1-215ENST00000597649 NWD1Q149M9 1564 aa25.6■■□□□ 1.69
SHKBP1-215ENST00000597649 NKTRP30414 1462 aaKnown RBP25.6■■□□□ 1.69
SHKBP1-215ENST00000597649 ANKRD50Q9ULJ7 1429 aa25.59■■□□□ 1.69
SHKBP1-215ENST00000597649 MSH6P52701 1360 aa25.58■■□□□ 1.69
SHKBP1-215ENST00000597649 PLEKHG1Q9ULL1 1385 aa25.57■■□□□ 1.68
SHKBP1-215ENST00000597649 RIMS2Q9UQ26 1411 aa25.56■■□□□ 1.68
SHKBP1-215ENST00000597649 RPRD2Q5VT52 1461 aaKnown RBP25.56■■□□□ 1.68
SHKBP1-215ENST00000597649 PPP1R15AO75807 674 aaPredicted RBP25.54■■□□□ 1.68
SHKBP1-215ENST00000597649 TBX22Q9Y458 520 aa25.54■■□□□ 1.68
SHKBP1-215ENST00000597649 HDGFP51858 240 aaKnown RBP25.52■■□□□ 1.68
SHKBP1-215ENST00000597649 NUTM2DQ5VT03 806 aaPredicted RBP25.52■■□□□ 1.68
SHKBP1-215ENST00000597649 TMEM131LA2VDJ0 1609 aa25.5■■□□□ 1.67
SHKBP1-215ENST00000597649 JCADQ9P266 1359 aa25.5■■□□□ 1.67
SHKBP1-215ENST00000597649 MYO5BQ9ULV0 1848 aa25.5■■□□□ 1.67
SHKBP1-215ENST00000597649 CHD2O14647 1828 aaKnown RBP25.49■■□□□ 1.67
SHKBP1-215ENST00000597649 CHGAP10645 457 aaKnown RBP25.49■■□□□ 1.67
SHKBP1-215ENST00000597649 ADAMTS13Q76LX8 1427 aa25.47■■□□□ 1.67
SHKBP1-215ENST00000597649 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.47■■□□□ 1.67
SHKBP1-215ENST00000597649 PHLPP1O60346 1717 aa25.46■■□□□ 1.67
SHKBP1-215ENST00000597649 GCC2Q8IWJ2 1684 aa25.45■■□□□ 1.66
SHKBP1-215ENST00000597649 NCOA3Q9Y6Q9 1424 aa25.45■■□□□ 1.66
SHKBP1-215ENST00000597649 C14orf37Q86TY3 774 aa25.42■■□□□ 1.66
SHKBP1-215ENST00000597649 C19orf44Q9H6X5 657 aa25.42■■□□□ 1.66
SHKBP1-215ENST00000597649 COL16A1Q07092 1604 aaPredicted RBP25.41■■□□□ 1.66
SHKBP1-215ENST00000597649 LRP6O75581 1613 aa25.39■■□□□ 1.66
SHKBP1-215ENST00000597649 CADPS2Q86UW7 1296 aa25.39■■□□□ 1.66
SHKBP1-215ENST00000597649 UNC13BO14795 1591 aa25.39■■□□□ 1.65
SHKBP1-215ENST00000597649 AMOTL2Q9Y2J4 779 aa25.38■■□□□ 1.65
SHKBP1-215ENST00000597649 PTPRUQ92729 1446 aa25.37■■□□□ 1.65
SHKBP1-215ENST00000597649 E9PCH4 1651 aa25.37■■□□□ 1.65
SHKBP1-215ENST00000597649 PIK3R4Q99570 1358 aa25.37■■□□□ 1.65
SHKBP1-215ENST00000597649 ATF3P18847 181 aa25.37■■□□□ 1.65
SHKBP1-215ENST00000597649 SPATA31A6Q5VVP1 1343 aa25.37■■□□□ 1.65
SHKBP1-215ENST00000597649 ROCK1Q13464 1354 aa25.35■■□□□ 1.65
SHKBP1-215ENST00000597649 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.34■■□□□ 1.65
SHKBP1-215ENST00000597649 BRINP3Q76B58 766 aa25.34■■□□□ 1.65
SHKBP1-215ENST00000597649 SETD1AO15047 1707 aaKnown RBP25.34■■□□□ 1.65
SHKBP1-215ENST00000597649 NUP155O75694 1391 aa25.33■■□□□ 1.65
SHKBP1-215ENST00000597649 MEX3CQ5U5Q3 659 aaKnown RBP25.32■■□□□ 1.64
SHKBP1-215ENST00000597649 DIP2AQ14689 1571 aa25.31■■□□□ 1.64
SHKBP1-215ENST00000597649 AHDC1Q5TGY3 1603 aaPredicted RBP25.3■■□□□ 1.64
SHKBP1-215ENST00000597649 IQGAP3Q86VI3 1631 aa25.3■■□□□ 1.64
SHKBP1-215ENST00000597649 ZNF772Q68DY9 489 aaPredicted RBP25.29■■□□□ 1.64
SHKBP1-215ENST00000597649 ITGAEP38570 1179 aa25.28■■□□□ 1.64
SHKBP1-215ENST00000597649 UPF1Q92900 1129 aaKnown RBP eCLIP25.27■■□□□ 1.64
SHKBP1-215ENST00000597649 TRIM52Q96A61 297 aa25.27■■□□□ 1.64
SHKBP1-215ENST00000597649 TRPM2O94759 1503 aa25.27■■□□□ 1.64
SHKBP1-215ENST00000597649 NUTM2BA6NNL0 878 aaPredicted RBP25.25■■□□□ 1.63
SHKBP1-215ENST00000597649 NUTM2EB1AL46 878 aaPredicted RBP25.25■■□□□ 1.63
SHKBP1-215ENST00000597649 NUTM2AQ8IVF1 878 aaPredicted RBP25.25■■□□□ 1.63
SHKBP1-215ENST00000597649 METP08581 1390 aa25.23■■□□□ 1.63
SHKBP1-215ENST00000597649 SHPRHQ149N8 1683 aa25.23■■□□□ 1.63
SHKBP1-215ENST00000597649 RXRBP28702 533 aa25.21■■□□□ 1.63
SHKBP1-215ENST00000597649 NRXN3Q9Y4C0 1643 aa25.21■■□□□ 1.63
SHKBP1-215ENST00000597649 DCCP43146 1447 aa25.2■■□□□ 1.63
SHKBP1-215ENST00000597649 DDX17Q92841 729 aaKnown RBP25.2■■□□□ 1.62
SHKBP1-215ENST00000597649 MST1RQ04912 1400 aa25.2■■□□□ 1.62
SHKBP1-215ENST00000597649 ZNF326Q5BKZ1 582 aaKnown RBP25.19■■□□□ 1.62
SHKBP1-215ENST00000597649 PPARGC1BQ86YN6 1023 aaKnown RBP25.19■■□□□ 1.62
SHKBP1-215ENST00000597649 ASXL1Q8IXJ9 1541 aa25.18■■□□□ 1.62
SHKBP1-215ENST00000597649 SETD5Q9C0A6 1442 aa25.18■■□□□ 1.62
SHKBP1-215ENST00000597649 SETBP1Q9Y6X0 1596 aa25.18■■□□□ 1.62
SHKBP1-215ENST00000597649 XRN1Q8IZH2 1706 aaKnown RBP25.17■■□□□ 1.62
SHKBP1-215ENST00000597649 AFF2P51816 1311 aa25.16■■□□□ 1.62
SHKBP1-215ENST00000597649 LRRC59Q96AG4 307 aaKnown RBP25.14■■□□□ 1.62
SHKBP1-215ENST00000597649 SRCAPQ6ZRS2 3230 aa25.1■■□□□ 1.61
SHKBP1-215ENST00000597649 ADGRL3Q9HAR2 1447 aa25.1■■□□□ 1.61
SHKBP1-215ENST00000597649 C8orf37Q96NL8 207 aa25.09■■□□□ 1.61
SHKBP1-215ENST00000597649 SPHKAPQ2M3C7 1700 aa25.09■■□□□ 1.61
SHKBP1-215ENST00000597649 PNPLA6Q8IY17 1366 aa25.08■■□□□ 1.61
SHKBP1-215ENST00000597649 QTRT2Q9H974 415 aaKnown RBP25.08■■□□□ 1.61
SHKBP1-215ENST00000597649 CDK12Q9NYV4 1490 aaPredicted RBP25.08■■□□□ 1.6
SHKBP1-215ENST00000597649 NHSL1Q5SYE7 1610 aa25.08■■□□□ 1.6
SHKBP1-215ENST00000597649 NEXMIFQ5QGS0 1516 aa25.07■■□□□ 1.6
SHKBP1-215ENST00000597649 CLTCL1P53675 1640 aa25.04■■□□□ 1.6
SHKBP1-215ENST00000597649 C1orf167Q5SNV9 1468 aa25.03■■□□□ 1.6
SHKBP1-215ENST00000597649 RBM6P78332 1123 aaKnown RBP25.02■■□□□ 1.6
SHKBP1-215ENST00000597649 ORAI2Q96SN7 254 aa25.02■■□□□ 1.6
SHKBP1-215ENST00000597649 ADAMTS2O95450 1211 aa25.01■■□□□ 1.59
SHKBP1-215ENST00000597649 ROBO2Q9HCK4 1378 aa25.01■■□□□ 1.59
SHKBP1-215ENST00000597649 RGS12O14924 1447 aa25.01■■□□□ 1.59
SHKBP1-215ENST00000597649 NALCNQ8IZF0 1738 aa25■■□□□ 1.59
SHKBP1-215ENST00000597649 NGLY1Q96IV0 654 aa24.99■■□□□ 1.59
SHKBP1-215ENST00000597649 NAIPQ13075 1403 aa24.97■■□□□ 1.59
SHKBP1-215ENST00000597649 SOS2Q07890 1332 aaPredicted RBP24.97■■□□□ 1.59
SHKBP1-215ENST00000597649 VGFO15240 615 aaPredicted RBP24.97■■□□□ 1.59
SHKBP1-215ENST00000597649 PTCH1Q13635 1447 aa24.95■■□□□ 1.59
SHKBP1-215ENST00000597649 LAMC1P11047 1609 aa24.91■■□□□ 1.58
SHKBP1-215ENST00000597649 USP21Q9UK80 565 aa24.91■■□□□ 1.58
SHKBP1-215ENST00000597649 RPGRIP1LQ68CZ1 1315 aa24.9■■□□□ 1.58
SHKBP1-215ENST00000597649 RRBP1Q9P2E9 1410 aaKnown RBP24.9■■□□□ 1.58
SHKBP1-215ENST00000597649 KIF1BO60333 1816 aa24.9■■□□□ 1.58
SHKBP1-215ENST00000597649 FNBP4Q8N3X1 1017 aaPredicted RBP24.89■■□□□ 1.58
SHKBP1-215ENST00000597649 PRAG1Q86YV5 1406 aa24.88■■□□□ 1.57
SHKBP1-215ENST00000597649 TRPC5Q9UL62 973 aaPredicted RBP24.86■■□□□ 1.57
SHKBP1-215ENST00000597649 EP400Q96L91 3159 aa24.86■■□□□ 1.57
SHKBP1-215ENST00000597649 SLC4A1APQ9BWU0 796 aaKnown RBP24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms