RNA–Protein interactions for RNA: ENST00000597400.5

ZNF548-207, Transcript of zinc finger protein 548, humanhuman

TSL 3 BASIC

Gene ZNF548, Length 589 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF548-207ENST00000597400 ZFYVE9O95405 1425 aa17.37■□□□□ 0.37
ZNF548-207ENST00000597400 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.36■□□□□ 0.37
ZNF548-207ENST00000597400 STAG3Q9UJ98 1225 aa17.36■□□□□ 0.37
ZNF548-207ENST00000597400 TMEM131LA2VDJ0 1609 aa17.36■□□□□ 0.37
ZNF548-207ENST00000597400 MSH6P52701 1360 aa17.35■□□□□ 0.37
ZNF548-207ENST00000597400 JCADQ9P266 1359 aa17.35■□□□□ 0.37
ZNF548-207ENST00000597400 KANK1Q14678 1352 aa17.34■□□□□ 0.37
ZNF548-207ENST00000597400 AHDC1Q5TGY3 1603 aaPredicted RBP17.33■□□□□ 0.37
ZNF548-207ENST00000597400 SRCAPQ6ZRS2 3230 aa17.32■□□□□ 0.36
ZNF548-207ENST00000597400 DIP2AQ14689 1571 aa17.32■□□□□ 0.36
ZNF548-207ENST00000597400 FGD6Q6ZV73 1430 aa17.31■□□□□ 0.36
ZNF548-207ENST00000597400 SLAIN2Q9P270 581 aa17.31■□□□□ 0.36
ZNF548-207ENST00000597400 PLEKHG1Q9ULL1 1385 aa17.29■□□□□ 0.36
ZNF548-207ENST00000597400 ADGRL2O95490 1459 aa17.28■□□□□ 0.36
ZNF548-207ENST00000597400 RPRD2Q5VT52 1461 aaKnown RBP17.28■□□□□ 0.36
ZNF548-207ENST00000597400 RIMS2Q9UQ26 1411 aa17.28■□□□□ 0.36
ZNF548-207ENST00000597400 E9PCH4 1651 aa17.27■□□□□ 0.36
ZNF548-207ENST00000597400 CHIC2Q9UKJ5 165 aa17.27■□□□□ 0.36
ZNF548-207ENST00000597400 ANKRD30AQ9BXX3 1397 aa17.27■□□□□ 0.35
ZNF548-207ENST00000597400 UPF1Q92900 1129 aaKnown RBP eCLIP17.26■□□□□ 0.35
ZNF548-207ENST00000597400 ADAMTS13Q76LX8 1427 aa17.26■□□□□ 0.35
ZNF548-207ENST00000597400 UNC13BO14795 1591 aa17.25■□□□□ 0.35
ZNF548-207ENST00000597400 LOC105371045A0A1W2PR82 267 aa17.25■□□□□ 0.35
ZNF548-207ENST00000597400 NHSL1Q5SYE7 1610 aa17.25■□□□□ 0.35
ZNF548-207ENST00000597400 SLC52A1Q9NWF4 448 aa17.24■□□□□ 0.35
ZNF548-207ENST00000597400 SPATA31A6Q5VVP1 1343 aa17.23■□□□□ 0.35
ZNF548-207ENST00000597400 TRIM52Q96A61 297 aa17.23■□□□□ 0.35
ZNF548-207ENST00000597400 BCANQ96GW7 911 aa17.23■□□□□ 0.35
ZNF548-207ENST00000597400 NCOA3Q9Y6Q9 1424 aa17.22■□□□□ 0.35
ZNF548-207ENST00000597400 NRXN3Q9Y4C0 1643 aa17.22■□□□□ 0.35
ZNF548-207ENST00000597400 XRN1Q8IZH2 1706 aaKnown RBP17.22■□□□□ 0.35
ZNF548-207ENST00000597400 PTPRUQ92729 1446 aa17.2■□□□□ 0.34
ZNF548-207ENST00000597400 ASXL1Q8IXJ9 1541 aa17.19■□□□□ 0.34
ZNF548-207ENST00000597400 CDK12Q9NYV4 1490 aaPredicted RBP17.18■□□□□ 0.34
ZNF548-207ENST00000597400 TRPM2O94759 1503 aa17.18■□□□□ 0.34
ZNF548-207ENST00000597400 MEX3CQ5U5Q3 659 aaKnown RBP17.18■□□□□ 0.34
ZNF548-207ENST00000597400 ZNF772Q68DY9 489 aaPredicted RBP17.18■□□□□ 0.34
ZNF548-207ENST00000597400 TBX22Q9Y458 520 aa17.18■□□□□ 0.34
ZNF548-207ENST00000597400 ANKRD50Q9ULJ7 1429 aa17.18■□□□□ 0.34
ZNF548-207ENST00000597400 IQGAP3Q86VI3 1631 aa17.18■□□□□ 0.34
ZNF548-207ENST00000597400 PPP1R15AO75807 674 aaPredicted RBP17.17■□□□□ 0.34
ZNF548-207ENST00000597400 NUTM2DQ5VT03 806 aaPredicted RBP17.17■□□□□ 0.34
ZNF548-207ENST00000597400 NALCNQ8IZF0 1738 aa17.16■□□□□ 0.34
ZNF548-207ENST00000597400 EP400Q96L91 3159 aa17.16■□□□□ 0.34
ZNF548-207ENST00000597400 BRINP3Q76B58 766 aa17.15■□□□□ 0.34
ZNF548-207ENST00000597400 RGS12O14924 1447 aa17.14■□□□□ 0.33
ZNF548-207ENST00000597400 C14orf37Q86TY3 774 aa17.14■□□□□ 0.33
ZNF548-207ENST00000597400 PIK3R4Q99570 1358 aa17.14■□□□□ 0.33
ZNF548-207ENST00000597400 CADPS2Q86UW7 1296 aa17.13■□□□□ 0.33
ZNF548-207ENST00000597400 C19orf44Q9H6X5 657 aa17.13■□□□□ 0.33
ZNF548-207ENST00000597400 MST1RQ04912 1400 aa17.13■□□□□ 0.33
ZNF548-207ENST00000597400 SETD5Q9C0A6 1442 aa17.13■□□□□ 0.33
ZNF548-207ENST00000597400 SETBP1Q9Y6X0 1596 aa17.12■□□□□ 0.33
ZNF548-207ENST00000597400 RXRBP28702 533 aa17.12■□□□□ 0.33
ZNF548-207ENST00000597400 AFF2P51816 1311 aa17.12■□□□□ 0.33
ZNF548-207ENST00000597400 DCCP43146 1447 aa17.12■□□□□ 0.33
ZNF548-207ENST00000597400 NUTM2BA6NNL0 878 aaPredicted RBP17.11■□□□□ 0.33
ZNF548-207ENST00000597400 NUTM2EB1AL46 878 aaPredicted RBP17.11■□□□□ 0.33
ZNF548-207ENST00000597400 ATF3P18847 181 aa17.11■□□□□ 0.33
ZNF548-207ENST00000597400 NUTM2AQ8IVF1 878 aaPredicted RBP17.11■□□□□ 0.33
ZNF548-207ENST00000597400 SPHKAPQ2M3C7 1700 aa17.1■□□□□ 0.33
ZNF548-207ENST00000597400 CHGAP10645 457 aaKnown RBP17.1■□□□□ 0.33
ZNF548-207ENST00000597400 LAMC1P11047 1609 aa17.08■□□□□ 0.32
ZNF548-207ENST00000597400 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.08■□□□□ 0.32
ZNF548-207ENST00000597400 AMOTL2Q9Y2J4 779 aa17.08■□□□□ 0.32
ZNF548-207ENST00000597400 HDGFP51858 240 aaKnown RBP17.07■□□□□ 0.32
ZNF548-207ENST00000597400 PNPLA6Q8IY17 1366 aa17.06■□□□□ 0.32
ZNF548-207ENST00000597400 DDX17Q92841 729 aaKnown RBP17.06■□□□□ 0.32
ZNF548-207ENST00000597400 FAM50AQ14320 339 aaKnown RBP17.05■□□□□ 0.32
ZNF548-207ENST00000597400 ADGRL3Q9HAR2 1447 aa17.04■□□□□ 0.32
ZNF548-207ENST00000597400 APLP2Q06481 763 aa17.03■□□□□ 0.32
ZNF548-207ENST00000597400 METP08581 1390 aa17.02■□□□□ 0.32
ZNF548-207ENST00000597400 NEXMIFQ5QGS0 1516 aa17.02■□□□□ 0.32
ZNF548-207ENST00000597400 C8orf37Q96NL8 207 aa17.02■□□□□ 0.32
ZNF548-207ENST00000597400 CLTCL1P53675 1640 aa17.02■□□□□ 0.31
ZNF548-207ENST00000597400 MARF1Q9Y4F3 1742 aaKnown RBP17■□□□□ 0.31
ZNF548-207ENST00000597400 COL22A1Q8NFW1 1626 aaPredicted RBP16.99■□□□□ 0.31
ZNF548-207ENST00000597400 RBM6P78332 1123 aaKnown RBP16.99■□□□□ 0.31
ZNF548-207ENST00000597400 QTRT2Q9H974 415 aaKnown RBP16.99■□□□□ 0.31
ZNF548-207ENST00000597400 LRRC59Q96AG4 307 aaKnown RBP16.97■□□□□ 0.31
ZNF548-207ENST00000597400 ROCK1Q13464 1354 aa16.97■□□□□ 0.31
ZNF548-207ENST00000597400 C1orf167Q5SNV9 1468 aa16.97■□□□□ 0.31
ZNF548-207ENST00000597400 KIF1BO60333 1816 aa16.96■□□□□ 0.31
ZNF548-207ENST00000597400 NUP155O75694 1391 aa16.95■□□□□ 0.3
ZNF548-207ENST00000597400 ADAMTS2O95450 1211 aa16.94■□□□□ 0.3
ZNF548-207ENST00000597400 ATAD2Q6PL18 1390 aa16.92■□□□□ 0.3
ZNF548-207ENST00000597400 ATRNO75882 1429 aa16.91■□□□□ 0.3
ZNF548-207ENST00000597400 PTCH1Q13635 1447 aa16.91■□□□□ 0.3
ZNF548-207ENST00000597400 NGLY1Q96IV0 654 aa16.91■□□□□ 0.3
ZNF548-207ENST00000597400 SOS2Q07890 1332 aaPredicted RBP16.9■□□□□ 0.3
ZNF548-207ENST00000597400 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.9■□□□□ 0.3
ZNF548-207ENST00000597400 BRWD3Q6RI45 1802 aa16.89■□□□□ 0.29
ZNF548-207ENST00000597400 MYOM2P54296 1465 aa16.89■□□□□ 0.29
ZNF548-207ENST00000597400 ORAI2Q96SN7 254 aa16.89■□□□□ 0.29
ZNF548-207ENST00000597400 PPLO60437 1756 aa16.89■□□□□ 0.29
ZNF548-207ENST00000597400 ROBO2Q9HCK4 1378 aa16.89■□□□□ 0.29
ZNF548-207ENST00000597400 ZNF326Q5BKZ1 582 aaKnown RBP16.88■□□□□ 0.29
ZNF548-207ENST00000597400 USP21Q9UK80 565 aa16.88■□□□□ 0.29
ZNF548-207ENST00000597400 PRAG1Q86YV5 1406 aa16.87■□□□□ 0.29
ZNF548-207ENST00000597400 BCL9LQ86UU0 1499 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms