RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 NWD1Q149M9 1564 aa27.01■■□□□ 1.91
SHKBP1-203ENST00000594298 UNC13BO14795 1591 aa27■■□□□ 1.91
SHKBP1-203ENST00000594298 PROSER2Q86WR7 435 aaPredicted RBP26.99■■□□□ 1.91
SHKBP1-203ENST00000594298 PLEKHG1Q9ULL1 1385 aa26.98■■□□□ 1.91
SHKBP1-203ENST00000594298 HDGFP51858 240 aaKnown RBP26.97■■□□□ 1.91
SHKBP1-203ENST00000594298 GCC2Q8IWJ2 1684 aa26.95■■□□□ 1.91
SHKBP1-203ENST00000594298 TMEM131LA2VDJ0 1609 aa26.95■■□□□ 1.91
SHKBP1-203ENST00000594298 RIMS2Q9UQ26 1411 aa26.95■■□□□ 1.9
SHKBP1-203ENST00000594298 BCANQ96GW7 911 aa26.94■■□□□ 1.9
SHKBP1-203ENST00000594298 RBM33Q96EV2 1170 aaKnown RBP26.92■■□□□ 1.9
SHKBP1-203ENST00000594298 PPP1R15AO75807 674 aaPredicted RBP26.91■■□□□ 1.9
SHKBP1-203ENST00000594298 MSH6P52701 1360 aa26.9■■□□□ 1.9
SHKBP1-203ENST00000594298 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.9■■□□□ 1.9
SHKBP1-203ENST00000594298 TBX22Q9Y458 520 aa26.89■■□□□ 1.9
SHKBP1-203ENST00000594298 IQGAP3Q86VI3 1631 aa26.88■■□□□ 1.89
SHKBP1-203ENST00000594298 E9PCH4 1651 aa26.88■■□□□ 1.89
SHKBP1-203ENST00000594298 ROBO1Q9Y6N7 1651 aa26.87■■□□□ 1.89
SHKBP1-203ENST00000594298 RGS17Q9UGC6 210 aaPredicted RBP26.86■■□□□ 1.89
SHKBP1-203ENST00000594298 MYO5BQ9ULV0 1848 aa26.86■■□□□ 1.89
SHKBP1-203ENST00000594298 NCOA3Q9Y6Q9 1424 aa26.85■■□□□ 1.89
SHKBP1-203ENST00000594298 NUP155O75694 1391 aa26.84■■□□□ 1.89
SHKBP1-203ENST00000594298 CHGAP10645 457 aaKnown RBP26.84■■□□□ 1.89
SHKBP1-203ENST00000594298 CHD2O14647 1828 aaKnown RBP26.83■■□□□ 1.89
SHKBP1-203ENST00000594298 ADAMTS13Q76LX8 1427 aa26.83■■□□□ 1.89
SHKBP1-203ENST00000594298 SLAIN2Q9P270 581 aa26.83■■□□□ 1.89
SHKBP1-203ENST00000594298 PIK3R4Q99570 1358 aa26.82■■□□□ 1.88
SHKBP1-203ENST00000594298 DIP2AQ14689 1571 aa26.81■■□□□ 1.88
SHKBP1-203ENST00000594298 ITGAEP38570 1179 aa26.77■■□□□ 1.88
SHKBP1-203ENST00000594298 NUTM2DQ5VT03 806 aaPredicted RBP26.76■■□□□ 1.87
SHKBP1-203ENST00000594298 JCADQ9P266 1359 aa26.71■■□□□ 1.87
SHKBP1-203ENST00000594298 TRPM2O94759 1503 aa26.71■■□□□ 1.87
SHKBP1-203ENST00000594298 C19orf44Q9H6X5 657 aa26.71■■□□□ 1.87
SHKBP1-203ENST00000594298 CADPS2Q86UW7 1296 aa26.7■■□□□ 1.86
SHKBP1-203ENST00000594298 PHLPP1O60346 1717 aa26.69■■□□□ 1.86
SHKBP1-203ENST00000594298 C14orf37Q86TY3 774 aa26.69■■□□□ 1.86
SHKBP1-203ENST00000594298 POTEAQ6S8J7 498 aa26.68■■□□□ 1.86
SHKBP1-203ENST00000594298 PPARGC1BQ86YN6 1023 aaKnown RBP26.68■■□□□ 1.86
SHKBP1-203ENST00000594298 AMOTL2Q9Y2J4 779 aa26.68■■□□□ 1.86
SHKBP1-203ENST00000594298 PTPRUQ92729 1446 aa26.67■■□□□ 1.86
SHKBP1-203ENST00000594298 COL16A1Q07092 1604 aaPredicted RBP26.65■■□□□ 1.86
SHKBP1-203ENST00000594298 ATF3P18847 181 aa26.65■■□□□ 1.86
SHKBP1-203ENST00000594298 SETBP1Q9Y6X0 1596 aa26.65■■□□□ 1.86
SHKBP1-203ENST00000594298 SPHKAPQ2M3C7 1700 aa26.64■■□□□ 1.85
SHKBP1-203ENST00000594298 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.64■■□□□ 1.85
SHKBP1-203ENST00000594298 RRBP1Q9P2E9 1410 aaKnown RBP26.63■■□□□ 1.85
SHKBP1-203ENST00000594298 NRXN3Q9Y4C0 1643 aa26.62■■□□□ 1.85
SHKBP1-203ENST00000594298 AHDC1Q5TGY3 1603 aaPredicted RBP26.61■■□□□ 1.85
SHKBP1-203ENST00000594298 DCCP43146 1447 aa26.61■■□□□ 1.85
SHKBP1-203ENST00000594298 SPATA31A6Q5VVP1 1343 aa26.6■■□□□ 1.85
SHKBP1-203ENST00000594298 ZNF326Q5BKZ1 582 aaKnown RBP26.59■■□□□ 1.85
SHKBP1-203ENST00000594298 XRN1Q8IZH2 1706 aaKnown RBP26.59■■□□□ 1.85
SHKBP1-203ENST00000594298 NAIPQ13075 1403 aa26.57■■□□□ 1.84
SHKBP1-203ENST00000594298 METP08581 1390 aa26.56■■□□□ 1.84
SHKBP1-203ENST00000594298 BRINP3Q76B58 766 aa26.55■■□□□ 1.84
SHKBP1-203ENST00000594298 CLTCL1P53675 1640 aa26.54■■□□□ 1.84
SHKBP1-203ENST00000594298 NEXMIFQ5QGS0 1516 aa26.54■■□□□ 1.84
SHKBP1-203ENST00000594298 LRP6O75581 1613 aa26.54■■□□□ 1.84
SHKBP1-203ENST00000594298 MST1RQ04912 1400 aa26.5■■□□□ 1.83
SHKBP1-203ENST00000594298 SHPRHQ149N8 1683 aa26.5■■□□□ 1.83
SHKBP1-203ENST00000594298 ASXL1Q8IXJ9 1541 aa26.49■■□□□ 1.83
SHKBP1-203ENST00000594298 HFM1A2PYH4 1435 aa26.48■■□□□ 1.83
SHKBP1-203ENST00000594298 ADGRL3Q9HAR2 1447 aa26.47■■□□□ 1.83
SHKBP1-203ENST00000594298 MEX3CQ5U5Q3 659 aaKnown RBP26.46■■□□□ 1.83
SHKBP1-203ENST00000594298 ZNF772Q68DY9 489 aaPredicted RBP26.46■■□□□ 1.83
SHKBP1-203ENST00000594298 SETD5Q9C0A6 1442 aa26.46■■□□□ 1.83
SHKBP1-203ENST00000594298 VGFO15240 615 aaPredicted RBP26.43■■□□□ 1.82
SHKBP1-203ENST00000594298 KIF1BO60333 1816 aa26.42■■□□□ 1.82
SHKBP1-203ENST00000594298 TRIM52Q96A61 297 aa26.41■■□□□ 1.82
SHKBP1-203ENST00000594298 RPGRIP1LQ68CZ1 1315 aa26.4■■□□□ 1.82
SHKBP1-203ENST00000594298 PTCH1Q13635 1447 aa26.4■■□□□ 1.82
SHKBP1-203ENST00000594298 NHSL1Q5SYE7 1610 aa26.39■■□□□ 1.82
SHKBP1-203ENST00000594298 LRRC59Q96AG4 307 aaKnown RBP26.39■■□□□ 1.82
SHKBP1-203ENST00000594298 PRAG1Q86YV5 1406 aa26.39■■□□□ 1.81
SHKBP1-203ENST00000594298 SLC4A1APQ9BWU0 796 aaKnown RBP26.38■■□□□ 1.81
SHKBP1-203ENST00000594298 NALCNQ8IZF0 1738 aa26.36■■□□□ 1.81
SHKBP1-203ENST00000594298 NUTM2BA6NNL0 878 aaPredicted RBP26.35■■□□□ 1.81
SHKBP1-203ENST00000594298 NUTM2EB1AL46 878 aaPredicted RBP26.35■■□□□ 1.81
SHKBP1-203ENST00000594298 SETD1AO15047 1707 aaKnown RBP26.35■■□□□ 1.81
SHKBP1-203ENST00000594298 NUTM2AQ8IVF1 878 aaPredicted RBP26.35■■□□□ 1.81
SHKBP1-203ENST00000594298 C1orf167Q5SNV9 1468 aa26.34■■□□□ 1.81
SHKBP1-203ENST00000594298 ROBO2Q9HCK4 1378 aa26.33■■□□□ 1.81
SHKBP1-203ENST00000594298 PNPLA6Q8IY17 1366 aa26.32■■□□□ 1.8
SHKBP1-203ENST00000594298 DDX17Q92841 729 aaKnown RBP26.31■■□□□ 1.8
SHKBP1-203ENST00000594298 RXRBP28702 533 aa26.3■■□□□ 1.8
SHKBP1-203ENST00000594298 AFF2P51816 1311 aa26.29■■□□□ 1.8
SHKBP1-203ENST00000594298 CDK12Q9NYV4 1490 aaPredicted RBP26.29■■□□□ 1.8
SHKBP1-203ENST00000594298 LAMC1P11047 1609 aa26.28■■□□□ 1.8
SHKBP1-203ENST00000594298 PPLO60437 1756 aa26.26■■□□□ 1.79
SHKBP1-203ENST00000594298 SOS2Q07890 1332 aaPredicted RBP26.25■■□□□ 1.79
SHKBP1-203ENST00000594298 UPF1Q92900 1129 aaKnown RBP eCLIP26.24■■□□□ 1.79
SHKBP1-203ENST00000594298 ORAI2Q96SN7 254 aa26.23■■□□□ 1.79
SHKBP1-203ENST00000594298 FOXD1Q16676 465 aa26.22■■□□□ 1.79
SHKBP1-203ENST00000594298 C8orf37Q96NL8 207 aa26.22■■□□□ 1.79
SHKBP1-203ENST00000594298 CCDC144AA2RUR9 1427 aa26.22■■□□□ 1.79
SHKBP1-203ENST00000594298 SPATA31E1Q6ZUB1 1445 aa26.2■■□□□ 1.78
SHKBP1-203ENST00000594298 ADGRF5Q8IZF2 1346 aa26.19■■□□□ 1.78
SHKBP1-203ENST00000594298 MPHOSPH9Q99550 1183 aa26.18■■□□□ 1.78
SHKBP1-203ENST00000594298 ANKRD30BQ9BXX2 1392 aa26.18■■□□□ 1.78
SHKBP1-203ENST00000594298 CDC42BPGQ6DT37 1551 aa26.17■■□□□ 1.78
SHKBP1-203ENST00000594298 TECPR2O15040 1411 aa26.16■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms