RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 RETREG2Q8NC44 543 aa13.21□□□□□ -0.29
VMP1-208ENST00000588617 GDPD2Q9HCC8 539 aa13.21□□□□□ -0.29
VMP1-208ENST00000588617 ZNF710Q8N1W2 664 aa13.2□□□□□ -0.3
VMP1-208ENST00000588617 RBM46Q8TBY0 533 aaKnown RBP13.19□□□□□ -0.3
VMP1-208ENST00000588617 HOXB1P14653 301 aaPredicted RBP13.18□□□□□ -0.3
VMP1-208ENST00000588617 TTC13Q8NBP0 860 aa13.18□□□□□ -0.3
VMP1-208ENST00000588617 SPIRE2Q8WWL2 714 aa13.18□□□□□ -0.3
VMP1-208ENST00000588617 RBM27Q9P2N5 1060 aaKnown RBP13.18□□□□□ -0.3
VMP1-208ENST00000588617 FOSBP53539 338 aa13.17□□□□□ -0.3
VMP1-208ENST00000588617 MTMR14Q8NCE2 650 aa13.17□□□□□ -0.3
VMP1-208ENST00000588617 ZDHHC16Q969W1 377 aa13.16□□□□□ -0.3
VMP1-208ENST00000588617 CALR3Q96L12 384 aaKnown RBP13.16□□□□□ -0.3
VMP1-208ENST00000588617 PRM3Q9NNZ6 103 aa13.16□□□□□ -0.3
VMP1-208ENST00000588617 POTEB3A0JP26 581 aa13.15□□□□□ -0.3
VMP1-208ENST00000588617 RIMBP2O15034 1052 aa13.15□□□□□ -0.3
VMP1-208ENST00000588617 ABL2P42684 1182 aa13.15□□□□□ -0.3
VMP1-208ENST00000588617 POTEBQ6S5H4 581 aa13.15□□□□□ -0.3
VMP1-208ENST00000588617 FAM205CA6NFA0 338 aa13.14□□□□□ -0.31
VMP1-208ENST00000588617 PPP1R15AO75807 674 aaPredicted RBP13.14□□□□□ -0.31
VMP1-208ENST00000588617 PRSS12P56730 875 aa13.14□□□□□ -0.31
VMP1-208ENST00000588617 HS3ST6Q96QI5 342 aa13.14□□□□□ -0.31
VMP1-208ENST00000588617 ACIN1Q9UKV3 1341 aaKnown RBP13.13□□□□□ -0.31
VMP1-208ENST00000588617 CSPP1Q1MSJ5 1256 aa13.13□□□□□ -0.31
VMP1-208ENST00000588617 ZNF454Q8N9F8 522 aa13.13□□□□□ -0.31
VMP1-208ENST00000588617 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.12□□□□□ -0.31
VMP1-208ENST00000588617 KDM4FA0A1W2PPD8 638 aa13.12□□□□□ -0.31
VMP1-208ENST00000588617 SPTLC1O15269 473 aa13.12□□□□□ -0.31
VMP1-208ENST00000588617 TUSC1Q2TAM9 212 aa13.12□□□□□ -0.31
VMP1-208ENST00000588617 NUTM1Q86Y26 1132 aa13.12□□□□□ -0.31
VMP1-208ENST00000588617 CDCA7LQ96GN5 454 aa13.12□□□□□ -0.31
VMP1-208ENST00000588617 ZSWIM6Q9HCJ5 1215 aa13.12□□□□□ -0.31
VMP1-208ENST00000588617 CD46P15529 392 aa13.1□□□□□ -0.31
VMP1-208ENST00000588617 IRF5Q13568 498 aa13.1□□□□□ -0.31
VMP1-208ENST00000588617 GPR153Q6NV75 609 aa13.1□□□□□ -0.31
VMP1-208ENST00000588617 RSBN1LQ6PCB5 846 aaPredicted RBP13.1□□□□□ -0.31
VMP1-208ENST00000588617 RCCD1A6NED2 376 aa13.09□□□□□ -0.31
VMP1-208ENST00000588617 AP1G2O75843 785 aa13.09□□□□□ -0.31
VMP1-208ENST00000588617 GLMNQ92990 594 aa13.09□□□□□ -0.31
VMP1-208ENST00000588617 ADAM33Q9BZ11 813 aa13.09□□□□□ -0.31
VMP1-208ENST00000588617 POM121CA8CG34 1229 aa13.08□□□□□ -0.32
VMP1-208ENST00000588617 GZF1Q9H116 711 aaPredicted RBP13.08□□□□□ -0.32
VMP1-208ENST00000588617 TBC1D2BQ9UPU7 963 aa13.08□□□□□ -0.32
VMP1-208ENST00000588617 MOXD2PA6NHM9 499 aa13.07□□□□□ -0.32
VMP1-208ENST00000588617 TMCO4Q5TGY1 634 aa13.07□□□□□ -0.32
VMP1-208ENST00000588617 SULF1Q8IWU6 871 aa13.07□□□□□ -0.32
VMP1-208ENST00000588617 SOCS7O14512 581 aa13.06□□□□□ -0.32
VMP1-208ENST00000588617 PDE4CQ08493 712 aa13.06□□□□□ -0.32
VMP1-208ENST00000588617 DDX11L8A8MPP1 907 aa13.05□□□□□ -0.32
VMP1-208ENST00000588617 QPCTQ16769 361 aa13.05□□□□□ -0.32
VMP1-208ENST00000588617 LILRB3O75022 631 aa13.04□□□□□ -0.32
VMP1-208ENST00000588617 NDUFV2P19404 249 aa13.04□□□□□ -0.32
VMP1-208ENST00000588617 NUTM2BA6NNL0 878 aaPredicted RBP13.03□□□□□ -0.32
VMP1-208ENST00000588617 NUTM2EB1AL46 878 aaPredicted RBP13.03□□□□□ -0.32
VMP1-208ENST00000588617 ARSIQ5FYB1 569 aa13.03□□□□□ -0.32
VMP1-208ENST00000588617 RTL5Q5HYW3 569 aaPredicted RBP13.03□□□□□ -0.32
VMP1-208ENST00000588617 NUTM2DQ5VT03 806 aaPredicted RBP13.03□□□□□ -0.32
VMP1-208ENST00000588617 NUTM2AQ8IVF1 878 aaPredicted RBP13.03□□□□□ -0.32
VMP1-208ENST00000588617 EYA1Q99502 592 aa13.03□□□□□ -0.32
VMP1-208ENST00000588617 KRTAP3-3Q9BYR6 98 aa13.03□□□□□ -0.32
VMP1-208ENST00000588617 KRTAP3-2Q9BYR7 98 aa13.03□□□□□ -0.32
VMP1-208ENST00000588617 FAM198AQ9UFP1 575 aa13.03□□□□□ -0.32
VMP1-208ENST00000588617 PCDHB15Q9Y5E8 787 aa13.03□□□□□ -0.32
VMP1-208ENST00000588617 ERBB3P21860 1342 aa13.03□□□□□ -0.32
VMP1-208ENST00000588617 USP17L8P0C7I0 530 aa13.01□□□□□ -0.33
VMP1-208ENST00000588617 GJA5P36382 358 aa13.01□□□□□ -0.33
VMP1-208ENST00000588617 KHSRPQ92945 711 aaKnown RBP eCLIP13.01□□□□□ -0.33
VMP1-208ENST00000588617 NUDT7P0C024 238 aa13□□□□□ -0.33
VMP1-208ENST00000588617 VARS2Q5ST30 1063 aaKnown RBP13□□□□□ -0.33
VMP1-208ENST00000588617 DNAJB2P25686 324 aa12.98□□□□□ -0.33
VMP1-208ENST00000588617 MFAP1P55081 439 aaKnown RBP12.98□□□□□ -0.33
VMP1-208ENST00000588617 HDGFL1Q5TGJ6 251 aa12.98□□□□□ -0.33
VMP1-208ENST00000588617 RGS22Q8NE09 1264 aa12.98□□□□□ -0.33
VMP1-208ENST00000588617 CABLES1Q8TDN4 633 aa12.98□□□□□ -0.33
VMP1-208ENST00000588617 NUDT18Q6ZVK8 323 aa12.97□□□□□ -0.33
VMP1-208ENST00000588617 MTMR7Q9Y216 660 aa12.97□□□□□ -0.33
VMP1-208ENST00000588617 RFX1P22670 979 aa12.96□□□□□ -0.33
VMP1-208ENST00000588617 PBXIP1Q96AQ6 731 aa12.96□□□□□ -0.33
VMP1-208ENST00000588617 NDUFB9Q9Y6M9 179 aa12.96□□□□□ -0.33
VMP1-208ENST00000588617 COL9A1P20849 921 aa12.95□□□□□ -0.34
VMP1-208ENST00000588617 SPNS2Q8IVW8 549 aa12.95□□□□□ -0.34
VMP1-208ENST00000588617 TSKSQ9UJT2 592 aa12.95□□□□□ -0.34
VMP1-208ENST00000588617 PRPF38BQ5VTL8 546 aaKnown RBP12.94□□□□□ -0.34
VMP1-208ENST00000588617 RDH13Q8NBN7 331 aa12.94□□□□□ -0.34
VMP1-208ENST00000588617 PATL2C9JE40 543 aaKnown RBP12.93□□□□□ -0.34
VMP1-208ENST00000588617 ZBTB3Q9H5J0 574 aa12.93□□□□□ -0.34
VMP1-208ENST00000588617 TMEM134Q9H6X4 195 aa12.93□□□□□ -0.34
VMP1-208ENST00000588617 PNMA3Q9UL41 463 aa12.93□□□□□ -0.34
VMP1-208ENST00000588617 NBPF26B4DH59 902 aa12.92□□□□□ -0.34
VMP1-208ENST00000588617 KDM4AO75164 1064 aa12.92□□□□□ -0.34
VMP1-208ENST00000588617 WASHC4Q2M389 1173 aa12.92□□□□□ -0.34
VMP1-208ENST00000588617 GJD4Q96KN9 370 aaPredicted RBP12.92□□□□□ -0.34
VMP1-208ENST00000588617 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.91□□□□□ -0.34
VMP1-208ENST00000588617 TATDN2Q93075 761 aa12.91□□□□□ -0.34
VMP1-208ENST00000588617 C3orf80F5H4A9 247 aa12.9□□□□□ -0.34
VMP1-208ENST00000588617 CSB-PGBD3P0DP91 1061 aa12.9□□□□□ -0.34
VMP1-208ENST00000588617 ADAMTS19Q8TE59 1207 aa12.9□□□□□ -0.34
VMP1-208ENST00000588617 FDX1P10109 184 aa12.88□□□□□ -0.35
VMP1-208ENST00000588617 PPP4R3BQ5MIZ7 849 aa12.88□□□□□ -0.35
VMP1-208ENST00000588617 PACS2Q86VP3 889 aa12.88□□□□□ -0.35
VMP1-208ENST00000588617 ZNF687Q8N1G0 1237 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms