RNA–Protein interactions for RNA: ENST00000576613.5

CTDNEP1-212, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3

Gene CTDNEP1, Length 606 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-212ENST00000576613 BCANQ96GW7 911 aa18.15■□□□□ 0.5
CTDNEP1-212ENST00000576613 MSH6P52701 1360 aa18.14■□□□□ 0.49
CTDNEP1-212ENST00000576613 RBM33Q96EV2 1170 aaKnown RBP18.11■□□□□ 0.49
CTDNEP1-212ENST00000576613 ANKRD50Q9ULJ7 1429 aa18.11■□□□□ 0.49
CTDNEP1-212ENST00000576613 GCC2Q8IWJ2 1684 aa18.11■□□□□ 0.49
CTDNEP1-212ENST00000576613 MYO5BQ9ULV0 1848 aa18.1■□□□□ 0.49
CTDNEP1-212ENST00000576613 PHLPP1O60346 1717 aa18.1■□□□□ 0.49
CTDNEP1-212ENST00000576613 PLEKHG1Q9ULL1 1385 aa18.1■□□□□ 0.49
CTDNEP1-212ENST00000576613 HDGFP51858 240 aaKnown RBP18.1■□□□□ 0.49
CTDNEP1-212ENST00000576613 CHD2O14647 1828 aaKnown RBP18.09■□□□□ 0.49
CTDNEP1-212ENST00000576613 ZFYVE9O95405 1425 aa18.09■□□□□ 0.49
CTDNEP1-212ENST00000576613 PPP1R15AO75807 674 aaPredicted RBP18.09■□□□□ 0.49
CTDNEP1-212ENST00000576613 FAM50AQ14320 339 aaKnown RBP18.08■□□□□ 0.48
CTDNEP1-212ENST00000576613 TMEM131LA2VDJ0 1609 aa18.08■□□□□ 0.48
CTDNEP1-212ENST00000576613 RIMS2Q9UQ26 1411 aa18.07■□□□□ 0.48
CTDNEP1-212ENST00000576613 SLAIN2Q9P270 581 aa18.07■□□□□ 0.48
CTDNEP1-212ENST00000576613 POTEAQ6S8J7 498 aa18.06■□□□□ 0.48
CTDNEP1-212ENST00000576613 JCADQ9P266 1359 aa18.05■□□□□ 0.48
CTDNEP1-212ENST00000576613 UNC13BO14795 1591 aa18.05■□□□□ 0.48
CTDNEP1-212ENST00000576613 NCOA3Q9Y6Q9 1424 aa18.04■□□□□ 0.48
CTDNEP1-212ENST00000576613 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.03■□□□□ 0.48
CTDNEP1-212ENST00000576613 DIP2AQ14689 1571 aa18.03■□□□□ 0.48
CTDNEP1-212ENST00000576613 TBX22Q9Y458 520 aa18.02■□□□□ 0.48
CTDNEP1-212ENST00000576613 COL16A1Q07092 1604 aaPredicted RBP18.01■□□□□ 0.47
CTDNEP1-212ENST00000576613 C14orf37Q86TY3 774 aa18.01■□□□□ 0.47
CTDNEP1-212ENST00000576613 E9PCH4 1651 aa18.01■□□□□ 0.47
CTDNEP1-212ENST00000576613 CHGAP10645 457 aaKnown RBP18■□□□□ 0.47
CTDNEP1-212ENST00000576613 PIK3R4Q99570 1358 aa17.99■□□□□ 0.47
CTDNEP1-212ENST00000576613 IQGAP3Q86VI3 1631 aa17.98■□□□□ 0.47
CTDNEP1-212ENST00000576613 SETD1AO15047 1707 aaKnown RBP17.98■□□□□ 0.47
CTDNEP1-212ENST00000576613 CADPS2Q86UW7 1296 aa17.98■□□□□ 0.47
CTDNEP1-212ENST00000576613 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.98■□□□□ 0.47
CTDNEP1-212ENST00000576613 TRPM2O94759 1503 aa17.97■□□□□ 0.47
CTDNEP1-212ENST00000576613 ADAMTS13Q76LX8 1427 aa17.97■□□□□ 0.47
CTDNEP1-212ENST00000576613 SPATA31A6Q5VVP1 1343 aa17.97■□□□□ 0.47
CTDNEP1-212ENST00000576613 ATF3P18847 181 aa17.96■□□□□ 0.47
CTDNEP1-212ENST00000576613 AHDC1Q5TGY3 1603 aaPredicted RBP17.96■□□□□ 0.47
CTDNEP1-212ENST00000576613 ROCK1Q13464 1354 aa17.95■□□□□ 0.46
CTDNEP1-212ENST00000576613 C19orf44Q9H6X5 657 aa17.95■□□□□ 0.46
CTDNEP1-212ENST00000576613 SHPRHQ149N8 1683 aa17.95■□□□□ 0.46
CTDNEP1-212ENST00000576613 MEX3CQ5U5Q3 659 aaKnown RBP17.94■□□□□ 0.46
CTDNEP1-212ENST00000576613 NUTM2DQ5VT03 806 aaPredicted RBP17.93■□□□□ 0.46
CTDNEP1-212ENST00000576613 LRP6O75581 1613 aa17.93■□□□□ 0.46
CTDNEP1-212ENST00000576613 ZNF772Q68DY9 489 aaPredicted RBP17.91■□□□□ 0.46
CTDNEP1-212ENST00000576613 DCCP43146 1447 aa17.9■□□□□ 0.46
CTDNEP1-212ENST00000576613 NUP155O75694 1391 aa17.9■□□□□ 0.46
CTDNEP1-212ENST00000576613 AMOTL2Q9Y2J4 779 aa17.89■□□□□ 0.45
CTDNEP1-212ENST00000576613 SPHKAPQ2M3C7 1700 aa17.87■□□□□ 0.45
CTDNEP1-212ENST00000576613 XRN1Q8IZH2 1706 aaKnown RBP17.87■□□□□ 0.45
CTDNEP1-212ENST00000576613 SETBP1Q9Y6X0 1596 aa17.87■□□□□ 0.45
CTDNEP1-212ENST00000576613 BRINP3Q76B58 766 aa17.86■□□□□ 0.45
CTDNEP1-212ENST00000576613 PTPRUQ92729 1446 aa17.86■□□□□ 0.45
CTDNEP1-212ENST00000576613 NRXN3Q9Y4C0 1643 aa17.86■□□□□ 0.45
CTDNEP1-212ENST00000576613 ASXL1Q8IXJ9 1541 aa17.85■□□□□ 0.45
CTDNEP1-212ENST00000576613 TRIM52Q96A61 297 aa17.83■□□□□ 0.44
CTDNEP1-212ENST00000576613 NHSL1Q5SYE7 1610 aa17.83■□□□□ 0.44
CTDNEP1-212ENST00000576613 ITGAEP38570 1179 aa17.82■□□□□ 0.44
CTDNEP1-212ENST00000576613 SETD5Q9C0A6 1442 aa17.81■□□□□ 0.44
CTDNEP1-212ENST00000576613 NUTM2BA6NNL0 878 aaPredicted RBP17.81■□□□□ 0.44
CTDNEP1-212ENST00000576613 NUTM2EB1AL46 878 aaPredicted RBP17.81■□□□□ 0.44
CTDNEP1-212ENST00000576613 RXRBP28702 533 aa17.81■□□□□ 0.44
CTDNEP1-212ENST00000576613 ZNF326Q5BKZ1 582 aaKnown RBP17.81■□□□□ 0.44
CTDNEP1-212ENST00000576613 NUTM2AQ8IVF1 878 aaPredicted RBP17.81■□□□□ 0.44
CTDNEP1-212ENST00000576613 MST1RQ04912 1400 aa17.81■□□□□ 0.44
CTDNEP1-212ENST00000576613 UPF1Q92900 1129 aaKnown RBP eCLIP17.8■□□□□ 0.44
CTDNEP1-212ENST00000576613 CDK12Q9NYV4 1490 aaPredicted RBP17.8■□□□□ 0.44
CTDNEP1-212ENST00000576613 LRRC59Q96AG4 307 aaKnown RBP17.78■□□□□ 0.44
CTDNEP1-212ENST00000576613 ADGRL3Q9HAR2 1447 aa17.78■□□□□ 0.44
CTDNEP1-212ENST00000576613 METP08581 1390 aa17.78■□□□□ 0.44
CTDNEP1-212ENST00000576613 NALCNQ8IZF0 1738 aa17.77■□□□□ 0.44
CTDNEP1-212ENST00000576613 AFF2P51816 1311 aa17.76■□□□□ 0.43
CTDNEP1-212ENST00000576613 NEXMIFQ5QGS0 1516 aa17.76■□□□□ 0.43
CTDNEP1-212ENST00000576613 CLTCL1P53675 1640 aa17.76■□□□□ 0.43
CTDNEP1-212ENST00000576613 KIF1BO60333 1816 aa17.75■□□□□ 0.43
CTDNEP1-212ENST00000576613 PNPLA6Q8IY17 1366 aa17.72■□□□□ 0.43
CTDNEP1-212ENST00000576613 C8orf37Q96NL8 207 aa17.72■□□□□ 0.43
CTDNEP1-212ENST00000576613 PTCH1Q13635 1447 aa17.7■□□□□ 0.42
CTDNEP1-212ENST00000576613 LAMC1P11047 1609 aa17.69■□□□□ 0.42
CTDNEP1-212ENST00000576613 C1orf167Q5SNV9 1468 aa17.69■□□□□ 0.42
CTDNEP1-212ENST00000576613 RGS12O14924 1447 aa17.68■□□□□ 0.42
CTDNEP1-212ENST00000576613 RBM6P78332 1123 aaKnown RBP17.68■□□□□ 0.42
CTDNEP1-212ENST00000576613 DDX17Q92841 729 aaKnown RBP17.68■□□□□ 0.42
CTDNEP1-212ENST00000576613 QTRT2Q9H974 415 aaKnown RBP17.68■□□□□ 0.42
CTDNEP1-212ENST00000576613 VGFO15240 615 aaPredicted RBP17.66■□□□□ 0.42
CTDNEP1-212ENST00000576613 PPARGC1BQ86YN6 1023 aaKnown RBP17.65■□□□□ 0.42
CTDNEP1-212ENST00000576613 NGLY1Q96IV0 654 aa17.65■□□□□ 0.42
CTDNEP1-212ENST00000576613 PRAG1Q86YV5 1406 aa17.64■□□□□ 0.42
CTDNEP1-212ENST00000576613 ADAMTS2O95450 1211 aa17.64■□□□□ 0.41
CTDNEP1-212ENST00000576613 NAIPQ13075 1403 aa17.64■□□□□ 0.41
CTDNEP1-212ENST00000576613 ROBO2Q9HCK4 1378 aa17.63■□□□□ 0.41
CTDNEP1-212ENST00000576613 SOS2Q07890 1332 aaPredicted RBP17.62■□□□□ 0.41
CTDNEP1-212ENST00000576613 RPGRIP1LQ68CZ1 1315 aa17.62■□□□□ 0.41
CTDNEP1-212ENST00000576613 HFM1A2PYH4 1435 aa17.62■□□□□ 0.41
CTDNEP1-212ENST00000576613 RRBP1Q9P2E9 1410 aaKnown RBP17.62■□□□□ 0.41
CTDNEP1-212ENST00000576613 COL22A1Q8NFW1 1626 aaPredicted RBP17.61■□□□□ 0.41
CTDNEP1-212ENST00000576613 PPLO60437 1756 aa17.61■□□□□ 0.41
CTDNEP1-212ENST00000576613 ORAI2Q96SN7 254 aa17.6■□□□□ 0.41
CTDNEP1-212ENST00000576613 ATAD2Q6PL18 1390 aa17.6■□□□□ 0.41
CTDNEP1-212ENST00000576613 USP21Q9UK80 565 aa17.59■□□□□ 0.41
CTDNEP1-212ENST00000576613 CDC42BPGQ6DT37 1551 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms