RNA–Protein interactions for RNA: ENST00000569764.1

SMG1-217, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 4,187 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-217ENST00000569764 KDM5BQ9UGL1 1544 aa8.92□□□□□ -0.98
SMG1-217ENST00000569764 PATL2C9JE40 543 aaKnown RBP8.91□□□□□ -0.98
SMG1-217ENST00000569764 VGFO15240 615 aaPredicted RBP8.91□□□□□ -0.98
SMG1-217ENST00000569764 TCOF1Q13428 1488 aaKnown RBP8.91□□□□□ -0.98
SMG1-217ENST00000569764 AFAP1Q8N556 730 aa8.91□□□□□ -0.98
SMG1-217ENST00000569764 PLCH2O75038 1416 aa8.9□□□□□ -0.98
SMG1-217ENST00000569764 ATP10BO94823 1461 aa8.9□□□□□ -0.98
SMG1-217ENST00000569764 SHROOM2Q13796 1616 aa8.9□□□□□ -0.98
SMG1-217ENST00000569764 MFAP1P55081 439 aaKnown RBP8.9□□□□□ -0.98
SMG1-217ENST00000569764 CADPS2Q86UW7 1296 aa8.9□□□□□ -0.98
SMG1-217ENST00000569764 RRP7BPQ9NSQ0 103 aa8.9□□□□□ -0.98
SMG1-217ENST00000569764 SECISBP2LQ93073 1101 aaKnown RBP8.9□□□□□ -0.99
SMG1-217ENST00000569764 RGS22Q8NE09 1264 aa8.89□□□□□ -0.99
SMG1-217ENST00000569764 GZF1Q9H116 711 aaPredicted RBP8.89□□□□□ -0.99
SMG1-217ENST00000569764 LMOD2Q6P5Q4 547 aa8.89□□□□□ -0.99
SMG1-217ENST00000569764 PSME1Q06323 249 aa8.89□□□□□ -0.99
SMG1-217ENST00000569764 HFM1A2PYH4 1435 aa8.89□□□□□ -0.99
SMG1-217ENST00000569764 E9PSI1 815 aa8.88□□□□□ -0.99
SMG1-217ENST00000569764 STAC3Q96MF2 364 aa8.88□□□□□ -0.99
SMG1-217ENST00000569764 ZNF316A6NFI3 1004 aaPredicted RBP8.88□□□□□ -0.99
SMG1-217ENST00000569764 NEFMP07197 916 aa8.88□□□□□ -0.99
SMG1-217ENST00000569764 TEX2Q8IWB9 1127 aa8.88□□□□□ -0.99
SMG1-217ENST00000569764 TNRQ92752 1358 aa8.88□□□□□ -0.99
SMG1-217ENST00000569764 MSH6P52701 1360 aa8.88□□□□□ -0.99
SMG1-217ENST00000569764 DIEXFQ68CQ4 756 aaKnown RBP8.88□□□□□ -0.99
SMG1-217ENST00000569764 CDC42BPAQ5VT25 1732 aa8.88□□□□□ -0.99
SMG1-217ENST00000569764 FAM43BQ6ZT52 329 aaPredicted RBP8.87□□□□□ -0.99
SMG1-217ENST00000569764 ANAPC15P60006 121 aa8.87□□□□□ -0.99
SMG1-217ENST00000569764 GPATCH8Q9UKJ3 1502 aaKnown RBP8.86□□□□□ -0.99
SMG1-217ENST00000569764 SENP3Q9H4L4 574 aaPredicted RBP8.86□□□□□ -0.99
SMG1-217ENST00000569764 ABCC5O15440 1437 aa8.86□□□□□ -0.99
SMG1-217ENST00000569764 ADCY10Q96PN6 1610 aa8.86□□□□□ -0.99
SMG1-217ENST00000569764 GLI2P10070 1586 aa8.86□□□□□ -0.99
SMG1-217ENST00000569764 HSPA2P54652 639 aa8.86□□□□□ -0.99
SMG1-217ENST00000569764 NEUROD1Q13562 356 aa8.86□□□□□ -0.99
SMG1-217ENST00000569764 YEATS2Q9ULM3 1422 aa8.86□□□□□ -0.99
SMG1-217ENST00000569764 ZFYVE16Q7Z3T8 1539 aa8.86□□□□□ -0.99
SMG1-217ENST00000569764 RTL5Q5HYW3 569 aaPredicted RBP8.86□□□□□ -0.99
SMG1-217ENST00000569764 TRAPPC8Q9Y2L5 1435 aa8.86□□□□□ -0.99
SMG1-217ENST00000569764 ERICH6BQ5W0A0 696 aa8.85□□□□□ -0.99
SMG1-217ENST00000569764 GCC2Q8IWJ2 1684 aa8.85□□□□□ -0.99
SMG1-217ENST00000569764 LRPPRCP42704 1394 aaKnown RBP8.85□□□□□ -0.99
SMG1-217ENST00000569764 DNMT1P26358 1616 aaKnown RBP8.84□□□□□ -0.99
SMG1-217ENST00000569764 DAPK1P53355 1430 aa8.84□□□□□ -0.99
SMG1-217ENST00000569764 MIA2Q96PC5 1412 aa8.84□□□□□ -0.99
SMG1-217ENST00000569764 ZNF772Q68DY9 489 aaPredicted RBP8.83□□□□□ -1
SMG1-217ENST00000569764 CCDC82Q8N4S0 544 aa8.83□□□□□ -1
SMG1-217ENST00000569764 GPATCH11Q8N954 259 aa8.83□□□□□ -1
SMG1-217ENST00000569764 EIF3AQ14152 1382 aaKnown RBP8.83□□□□□ -1
SMG1-217ENST00000569764 CAMSAP2Q08AD1 1489 aa8.83□□□□□ -1
SMG1-217ENST00000569764 C11orf95C9JLR9 678 aaPredicted RBP8.83□□□□□ -1
SMG1-217ENST00000569764 CDC42BPBQ9Y5S2 1711 aa8.83□□□□□ -1
SMG1-217ENST00000569764 MIER1Q8N108 512 aa8.81□□□□□ -1
SMG1-217ENST00000569764 KIAA1107Q9UPP5 1409 aa8.81□□□□□ -1
SMG1-217ENST00000569764 ARAP3Q8WWN8 1544 aa8.81□□□□□ -1
SMG1-217ENST00000569764 CDCA8Q53HL2 280 aa8.81□□□□□ -1
SMG1-217ENST00000569764 HIRIP3Q9BW71 556 aaPredicted RBP8.81□□□□□ -1
SMG1-217ENST00000569764 TTC37Q6PGP7 1564 aa8.8□□□□□ -1
SMG1-217ENST00000569764 CROCC2H7BZ55 1655 aa8.8□□□□□ -1
SMG1-217ENST00000569764 DHX29Q7Z478 1369 aaKnown RBP8.8□□□□□ -1
SMG1-217ENST00000569764 FOXD4L6Q3SYB3 417 aaPredicted RBP8.79□□□□□ -1
SMG1-217ENST00000569764 FOXD4L3Q6VB84 417 aaPredicted RBP8.79□□□□□ -1
SMG1-217ENST00000569764 ILDR1Q86SU0 546 aaPredicted RBP8.79□□□□□ -1
SMG1-217ENST00000569764 CEBPAP49715 358 aaPredicted RBP8.79□□□□□ -1
SMG1-217ENST00000569764 CC2D2BQ6DHV5 1058 aa8.79□□□□□ -1
SMG1-217ENST00000569764 ITSN2Q9NZM3 1697 aa8.78□□□□□ -1
SMG1-217ENST00000569764 NUTM2BA6NNL0 878 aaPredicted RBP8.78□□□□□ -1
SMG1-217ENST00000569764 NUTM2EB1AL46 878 aaPredicted RBP8.78□□□□□ -1
SMG1-217ENST00000569764 PTMAP06454 111 aaKnown RBP8.78□□□□□ -1
SMG1-217ENST00000569764 NUTM2DQ5VT03 806 aaPredicted RBP8.78□□□□□ -1
SMG1-217ENST00000569764 NUTM2AQ8IVF1 878 aaPredicted RBP8.78□□□□□ -1
SMG1-217ENST00000569764 RTEL1-TNFRSF6BF6WH68 1400 aa8.78□□□□□ -1
SMG1-217ENST00000569764 SMARCA5O60264 1052 aaPredicted RBP8.78□□□□□ -1
SMG1-217ENST00000569764 NOL8Q76FK4 1167 aaKnown RBP8.78□□□□□ -1
SMG1-217ENST00000569764 FBXW7Q969H0 707 aa8.78□□□□□ -1
SMG1-217ENST00000569764 ZMYM3Q14202 1370 aa8.78□□□□□ -1
SMG1-217ENST00000569764 SAMD9LQ8IVG5 1584 aa8.78□□□□□ -1
SMG1-217ENST00000569764 A2MP01023 1474 aa8.77□□□□□ -1
SMG1-217ENST00000569764 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.77□□□□□ -1.01
SMG1-217ENST00000569764 EVA1CP58658 441 aa8.77□□□□□ -1.01
SMG1-217ENST00000569764 ZCCHC11Q5TAX3 1644 aaKnown RBP8.77□□□□□ -1.01
SMG1-217ENST00000569764 NCOA1Q15788 1441 aa8.77□□□□□ -1.01
SMG1-217ENST00000569764 CCDC141Q6ZP82 1450 aa8.77□□□□□ -1.01
SMG1-217ENST00000569764 RPGRIP1LQ68CZ1 1315 aa8.77□□□□□ -1.01
SMG1-217ENST00000569764 LRRC59Q96AG4 307 aaKnown RBP8.76□□□□□ -1.01
SMG1-217ENST00000569764 NUP155O75694 1391 aa8.76□□□□□ -1.01
SMG1-217ENST00000569764 KIF15Q9NS87 1388 aa8.76□□□□□ -1.01
SMG1-217ENST00000569764 MBD5Q9P267 1494 aa8.76□□□□□ -1.01
SMG1-217ENST00000569764 FAM193AP78312 1265 aa8.76□□□□□ -1.01
SMG1-217ENST00000569764 KCNG1Q9UIX4 513 aa8.76□□□□□ -1.01
SMG1-217ENST00000569764 GPRASP1Q5JY77 1395 aa8.76□□□□□ -1.01
SMG1-217ENST00000569764 KDM4FA0A1W2PPD8 638 aa8.76□□□□□ -1.01
SMG1-217ENST00000569764 IFNLR1Q8IU57 520 aaPredicted RBP8.76□□□□□ -1.01
SMG1-217ENST00000569764 NGDNQ8NEJ9 315 aaKnown RBP8.76□□□□□ -1.01
SMG1-217ENST00000569764 IPO4Q8TEX9 1081 aaKnown RBP8.76□□□□□ -1.01
SMG1-217ENST00000569764 NPATQ14207 1427 aa8.75□□□□□ -1.01
SMG1-217ENST00000569764 TSPOAP1O95153 1857 aa8.75□□□□□ -1.01
SMG1-217ENST00000569764 IL27Q8NEV9 243 aa8.75□□□□□ -1.01
SMG1-217ENST00000569764 MPHOSPH9Q99550 1183 aa8.75□□□□□ -1.01
SMG1-217ENST00000569764 DIP2BQ9P265 1576 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms