RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ITGAEP38570 1179 aa25.94■■□□□ 1.74
CLN3-211ENST00000564091 PPARGC1BQ86YN6 1023 aaKnown RBP25.94■■□□□ 1.74
CLN3-211ENST00000564091 KDM5AP29375 1690 aaKnown RBP25.93■■□□□ 1.74
CLN3-211ENST00000564091 RIMS2Q9UQ26 1411 aa25.92■■□□□ 1.74
CLN3-211ENST00000564091 HDGFP51858 240 aaKnown RBP25.92■■□□□ 1.74
CLN3-211ENST00000564091 ZFYVE9O95405 1425 aa25.91■■□□□ 1.74
CLN3-211ENST00000564091 NUTM2DQ5VT03 806 aaPredicted RBP25.91■■□□□ 1.74
CLN3-211ENST00000564091 PLEKHG1Q9ULL1 1385 aa25.9■■□□□ 1.74
CLN3-211ENST00000564091 ROCK1Q13464 1354 aa25.89■■□□□ 1.74
CLN3-211ENST00000564091 RGS17Q9UGC6 210 aaPredicted RBP25.88■■□□□ 1.73
CLN3-211ENST00000564091 XIRP1Q702N8 1843 aaKnown RBP25.86■■□□□ 1.73
CLN3-211ENST00000564091 NUP155O75694 1391 aa25.86■■□□□ 1.73
CLN3-211ENST00000564091 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.85■■□□□ 1.73
CLN3-211ENST00000564091 TBX22Q9Y458 520 aa25.85■■□□□ 1.73
CLN3-211ENST00000564091 NKTRP30414 1462 aaKnown RBP25.85■■□□□ 1.73
CLN3-211ENST00000564091 MSH6P52701 1360 aa25.84■■□□□ 1.73
CLN3-211ENST00000564091 SLAIN2Q9P270 581 aa25.83■■□□□ 1.73
CLN3-211ENST00000564091 UNC13BO14795 1591 aa25.81■■□□□ 1.72
CLN3-211ENST00000564091 NWD1Q149M9 1564 aa25.81■■□□□ 1.72
CLN3-211ENST00000564091 TMEM131LA2VDJ0 1609 aa25.8■■□□□ 1.72
CLN3-211ENST00000564091 C14orf37Q86TY3 774 aa25.77■■□□□ 1.72
CLN3-211ENST00000564091 ADAMTS13Q76LX8 1427 aa25.77■■□□□ 1.72
CLN3-211ENST00000564091 GCC2Q8IWJ2 1684 aa25.73■■□□□ 1.71
CLN3-211ENST00000564091 ROBO1Q9Y6N7 1651 aa25.73■■□□□ 1.71
CLN3-211ENST00000564091 E9PCH4 1651 aa25.72■■□□□ 1.71
CLN3-211ENST00000564091 POTEAQ6S8J7 498 aa25.72■■□□□ 1.71
CLN3-211ENST00000564091 AMOTL2Q9Y2J4 779 aa25.71■■□□□ 1.71
CLN3-211ENST00000564091 IQGAP3Q86VI3 1631 aa25.7■■□□□ 1.71
CLN3-211ENST00000564091 C19orf44Q9H6X5 657 aa25.69■■□□□ 1.7
CLN3-211ENST00000564091 NCOA3Q9Y6Q9 1424 aa25.69■■□□□ 1.7
CLN3-211ENST00000564091 PIK3R4Q99570 1358 aa25.69■■□□□ 1.7
CLN3-211ENST00000564091 MYO5BQ9ULV0 1848 aa25.68■■□□□ 1.7
CLN3-211ENST00000564091 ATF3P18847 181 aa25.67■■□□□ 1.7
CLN3-211ENST00000564091 ZNF326Q5BKZ1 582 aaKnown RBP25.67■■□□□ 1.7
CLN3-211ENST00000564091 CADPS2Q86UW7 1296 aa25.67■■□□□ 1.7
CLN3-211ENST00000564091 PTPRUQ92729 1446 aa25.66■■□□□ 1.7
CLN3-211ENST00000564091 JCADQ9P266 1359 aa25.66■■□□□ 1.7
CLN3-211ENST00000564091 CHD2O14647 1828 aaKnown RBP25.64■■□□□ 1.7
CLN3-211ENST00000564091 DIP2AQ14689 1571 aa25.61■■□□□ 1.69
CLN3-211ENST00000564091 TRPM2O94759 1503 aa25.58■■□□□ 1.68
CLN3-211ENST00000564091 BRINP3Q76B58 766 aa25.57■■□□□ 1.68
CLN3-211ENST00000564091 METP08581 1390 aa25.56■■□□□ 1.68
CLN3-211ENST00000564091 RRBP1Q9P2E9 1410 aaKnown RBP25.55■■□□□ 1.68
CLN3-211ENST00000564091 PHLPP1O60346 1717 aa25.54■■□□□ 1.68
CLN3-211ENST00000564091 NAIPQ13075 1403 aa25.54■■□□□ 1.68
CLN3-211ENST00000564091 MEX3CQ5U5Q3 659 aaKnown RBP25.52■■□□□ 1.68
CLN3-211ENST00000564091 TRIM52Q96A61 297 aa25.52■■□□□ 1.68
CLN3-211ENST00000564091 SPATA31A6Q5VVP1 1343 aa25.52■■□□□ 1.68
CLN3-211ENST00000564091 COL16A1Q07092 1604 aaPredicted RBP25.52■■□□□ 1.68
CLN3-211ENST00000564091 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.5■■□□□ 1.67
CLN3-211ENST00000564091 LRP6O75581 1613 aa25.49■■□□□ 1.67
CLN3-211ENST00000564091 SETBP1Q9Y6X0 1596 aa25.49■■□□□ 1.67
CLN3-211ENST00000564091 NRXN3Q9Y4C0 1643 aa25.48■■□□□ 1.67
CLN3-211ENST00000564091 DCCP43146 1447 aa25.46■■□□□ 1.67
CLN3-211ENST00000564091 NUTM2BA6NNL0 878 aaPredicted RBP25.46■■□□□ 1.67
CLN3-211ENST00000564091 NUTM2EB1AL46 878 aaPredicted RBP25.46■■□□□ 1.67
CLN3-211ENST00000564091 NUTM2AQ8IVF1 878 aaPredicted RBP25.46■■□□□ 1.67
CLN3-211ENST00000564091 AHDC1Q5TGY3 1603 aaPredicted RBP25.45■■□□□ 1.67
CLN3-211ENST00000564091 SPHKAPQ2M3C7 1700 aa25.45■■□□□ 1.66
CLN3-211ENST00000564091 MST1RQ04912 1400 aa25.45■■□□□ 1.66
CLN3-211ENST00000564091 SLC4A1APQ9BWU0 796 aaKnown RBP25.44■■□□□ 1.66
CLN3-211ENST00000564091 CLTCL1P53675 1640 aa25.44■■□□□ 1.66
CLN3-211ENST00000564091 ZNF772Q68DY9 489 aaPredicted RBP25.43■■□□□ 1.66
CLN3-211ENST00000564091 DDX17Q92841 729 aaKnown RBP25.43■■□□□ 1.66
CLN3-211ENST00000564091 NEXMIFQ5QGS0 1516 aa25.42■■□□□ 1.66
CLN3-211ENST00000564091 XRN1Q8IZH2 1706 aaKnown RBP25.41■■□□□ 1.66
CLN3-211ENST00000564091 VGFO15240 615 aaPredicted RBP25.41■■□□□ 1.66
CLN3-211ENST00000564091 HFM1A2PYH4 1435 aa25.4■■□□□ 1.66
CLN3-211ENST00000564091 ASXL1Q8IXJ9 1541 aa25.4■■□□□ 1.66
CLN3-211ENST00000564091 ADGRL3Q9HAR2 1447 aa25.39■■□□□ 1.66
CLN3-211ENST00000564091 LRRC59Q96AG4 307 aaKnown RBP25.38■■□□□ 1.65
CLN3-211ENST00000564091 FOXD1Q16676 465 aa25.37■■□□□ 1.65
CLN3-211ENST00000564091 SETD5Q9C0A6 1442 aa25.37■■□□□ 1.65
CLN3-211ENST00000564091 RPGRIP1LQ68CZ1 1315 aa25.36■■□□□ 1.65
CLN3-211ENST00000564091 ROBO2Q9HCK4 1378 aa25.35■■□□□ 1.65
CLN3-211ENST00000564091 RXRBP28702 533 aa25.32■■□□□ 1.64
CLN3-211ENST00000564091 AFF2P51816 1311 aa25.32■■□□□ 1.64
CLN3-211ENST00000564091 ORAI2Q96SN7 254 aa25.31■■□□□ 1.64
CLN3-211ENST00000564091 C1orf167Q5SNV9 1468 aa25.31■■□□□ 1.64
CLN3-211ENST00000564091 SHPRHQ149N8 1683 aa25.3■■□□□ 1.64
CLN3-211ENST00000564091 PTCH1Q13635 1447 aa25.29■■□□□ 1.64
CLN3-211ENST00000564091 C8orf37Q96NL8 207 aa25.29■■□□□ 1.64
CLN3-211ENST00000564091 PNPLA6Q8IY17 1366 aa25.29■■□□□ 1.64
CLN3-211ENST00000564091 SETD1AO15047 1707 aaKnown RBP25.26■■□□□ 1.63
CLN3-211ENST00000564091 RGL3Q3MIN7 710 aa25.26■■□□□ 1.63
CLN3-211ENST00000564091 UPF1Q92900 1129 aaKnown RBP eCLIP25.26■■□□□ 1.63
CLN3-211ENST00000564091 ADGRF5Q8IZF2 1346 aa25.26■■□□□ 1.63
CLN3-211ENST00000564091 ADAMTS2O95450 1211 aa25.24■■□□□ 1.63
CLN3-211ENST00000564091 MPHOSPH9Q99550 1183 aa25.23■■□□□ 1.63
CLN3-211ENST00000564091 KIF1BO60333 1816 aa25.23■■□□□ 1.63
CLN3-211ENST00000564091 SOS2Q07890 1332 aaPredicted RBP25.22■■□□□ 1.63
CLN3-211ENST00000564091 QTRT2Q9H974 415 aaKnown RBP25.22■■□□□ 1.63
CLN3-211ENST00000564091 NALCNQ8IZF0 1738 aa25.22■■□□□ 1.63
CLN3-211ENST00000564091 NHSL1Q5SYE7 1610 aa25.22■■□□□ 1.63
CLN3-211ENST00000564091 STK26Q9P289 416 aa25.21■■□□□ 1.63
CLN3-211ENST00000564091 PRAG1Q86YV5 1406 aa25.2■■□□□ 1.63
CLN3-211ENST00000564091 CCDC144AA2RUR9 1427 aa25.2■■□□□ 1.62
CLN3-211ENST00000564091 NGLY1Q96IV0 654 aa25.19■■□□□ 1.62
CLN3-211ENST00000564091 ESCO1Q5FWF5 840 aa25.18■■□□□ 1.62
CLN3-211ENST00000564091 WAPLQ7Z5K2 1190 aa25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms