RNA–Protein interactions for RNA: ENST00000563498.1

NME3-204, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2 BASIC

Gene NME3, Length 920 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-204ENST00000563498 ZFYVE9O95405 1425 aa28.96■■■□□ 2.23
NME3-204ENST00000563498 RGS17Q9UGC6 210 aaPredicted RBP28.95■■■□□ 2.22
NME3-204ENST00000563498 ROBO1Q9Y6N7 1651 aa28.95■■■□□ 2.22
NME3-204ENST00000563498 PLEKHG1Q9ULL1 1385 aa28.94■■■□□ 2.22
NME3-204ENST00000563498 HDGFP51858 240 aaKnown RBP28.92■■■□□ 2.22
NME3-204ENST00000563498 BCANQ96GW7 911 aa28.92■■■□□ 2.22
NME3-204ENST00000563498 GCC2Q8IWJ2 1684 aa28.92■■■□□ 2.22
NME3-204ENST00000563498 UNC13BO14795 1591 aa28.92■■■□□ 2.22
NME3-204ENST00000563498 TMEM131LA2VDJ0 1609 aa28.91■■■□□ 2.22
NME3-204ENST00000563498 MSH6P52701 1360 aa28.91■■■□□ 2.22
NME3-204ENST00000563498 RBM33Q96EV2 1170 aaKnown RBP28.9■■■□□ 2.22
NME3-204ENST00000563498 RIMS2Q9UQ26 1411 aa28.9■■■□□ 2.22
NME3-204ENST00000563498 MYO5BQ9ULV0 1848 aa28.89■■■□□ 2.22
NME3-204ENST00000563498 CHD2O14647 1828 aaKnown RBP28.87■■■□□ 2.21
NME3-204ENST00000563498 PPP1R15AO75807 674 aaPredicted RBP28.86■■■□□ 2.21
NME3-204ENST00000563498 ROCK1Q13464 1354 aa28.85■■■□□ 2.21
NME3-204ENST00000563498 SLAIN2Q9P270 581 aa28.84■■■□□ 2.21
NME3-204ENST00000563498 TBX22Q9Y458 520 aa28.84■■■□□ 2.21
NME3-204ENST00000563498 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.83■■■□□ 2.21
NME3-204ENST00000563498 NCOA3Q9Y6Q9 1424 aa28.83■■■□□ 2.21
NME3-204ENST00000563498 E9PCH4 1651 aa28.82■■■□□ 2.2
NME3-204ENST00000563498 IQGAP3Q86VI3 1631 aa28.8■■■□□ 2.2
NME3-204ENST00000563498 DIP2AQ14689 1571 aa28.79■■■□□ 2.2
NME3-204ENST00000563498 PHLPP1O60346 1717 aa28.77■■■□□ 2.2
NME3-204ENST00000563498 ADAMTS13Q76LX8 1427 aa28.77■■■□□ 2.2
NME3-204ENST00000563498 PIK3R4Q99570 1358 aa28.76■■■□□ 2.2
NME3-204ENST00000563498 CHGAP10645 457 aaKnown RBP28.75■■■□□ 2.19
NME3-204ENST00000563498 POTEAQ6S8J7 498 aa28.75■■■□□ 2.19
NME3-204ENST00000563498 JCADQ9P266 1359 aa28.75■■■□□ 2.19
NME3-204ENST00000563498 COL16A1Q07092 1604 aaPredicted RBP28.7■■■□□ 2.19
NME3-204ENST00000563498 NUP155O75694 1391 aa28.7■■■□□ 2.18
NME3-204ENST00000563498 NUTM2DQ5VT03 806 aaPredicted RBP28.68■■■□□ 2.18
NME3-204ENST00000563498 C14orf37Q86TY3 774 aa28.68■■■□□ 2.18
NME3-204ENST00000563498 CADPS2Q86UW7 1296 aa28.68■■■□□ 2.18
NME3-204ENST00000563498 C19orf44Q9H6X5 657 aa28.68■■■□□ 2.18
NME3-204ENST00000563498 TRPM2O94759 1503 aa28.68■■■□□ 2.18
NME3-204ENST00000563498 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.66■■■□□ 2.18
NME3-204ENST00000563498 AHDC1Q5TGY3 1603 aaPredicted RBP28.63■■■□□ 2.17
NME3-204ENST00000563498 ATF3P18847 181 aa28.63■■■□□ 2.17
NME3-204ENST00000563498 SPATA31A6Q5VVP1 1343 aa28.62■■■□□ 2.17
NME3-204ENST00000563498 AMOTL2Q9Y2J4 779 aa28.6■■■□□ 2.17
NME3-204ENST00000563498 PTPRUQ92729 1446 aa28.6■■■□□ 2.17
NME3-204ENST00000563498 SETBP1Q9Y6X0 1596 aa28.58■■■□□ 2.17
NME3-204ENST00000563498 DCCP43146 1447 aa28.58■■■□□ 2.17
NME3-204ENST00000563498 ITGAEP38570 1179 aa28.57■■■□□ 2.16
NME3-204ENST00000563498 SPHKAPQ2M3C7 1700 aa28.57■■■□□ 2.16
NME3-204ENST00000563498 LRP6O75581 1613 aa28.56■■■□□ 2.16
NME3-204ENST00000563498 SHPRHQ149N8 1683 aa28.56■■■□□ 2.16
NME3-204ENST00000563498 NRXN3Q9Y4C0 1643 aa28.56■■■□□ 2.16
NME3-204ENST00000563498 XRN1Q8IZH2 1706 aaKnown RBP28.55■■■□□ 2.16
NME3-204ENST00000563498 BRINP3Q76B58 766 aa28.52■■■□□ 2.16
NME3-204ENST00000563498 SETD1AO15047 1707 aaKnown RBP28.49■■■□□ 2.15
NME3-204ENST00000563498 MEX3CQ5U5Q3 659 aaKnown RBP28.49■■■□□ 2.15
NME3-204ENST00000563498 ZNF772Q68DY9 489 aaPredicted RBP28.49■■■□□ 2.15
NME3-204ENST00000563498 ZNF326Q5BKZ1 582 aaKnown RBP28.48■■■□□ 2.15
NME3-204ENST00000563498 ASXL1Q8IXJ9 1541 aa28.46■■■□□ 2.15
NME3-204ENST00000563498 METP08581 1390 aa28.46■■■□□ 2.15
NME3-204ENST00000563498 MST1RQ04912 1400 aa28.45■■■□□ 2.15
NME3-204ENST00000563498 SETD5Q9C0A6 1442 aa28.43■■■□□ 2.14
NME3-204ENST00000563498 NEXMIFQ5QGS0 1516 aa28.43■■■□□ 2.14
NME3-204ENST00000563498 CLTCL1P53675 1640 aa28.43■■■□□ 2.14
NME3-204ENST00000563498 NHSL1Q5SYE7 1610 aa28.42■■■□□ 2.14
NME3-204ENST00000563498 ADGRL3Q9HAR2 1447 aa28.41■■■□□ 2.14
NME3-204ENST00000563498 PPARGC1BQ86YN6 1023 aaKnown RBP28.4■■■□□ 2.14
NME3-204ENST00000563498 RRBP1Q9P2E9 1410 aaKnown RBP28.37■■■□□ 2.13
NME3-204ENST00000563498 LRRC59Q96AG4 307 aaKnown RBP28.36■■■□□ 2.13
NME3-204ENST00000563498 KIF1BO60333 1816 aa28.36■■■□□ 2.13
NME3-204ENST00000563498 NAIPQ13075 1403 aa28.35■■■□□ 2.13
NME3-204ENST00000563498 NUTM2BA6NNL0 878 aaPredicted RBP28.34■■■□□ 2.13
NME3-204ENST00000563498 NUTM2EB1AL46 878 aaPredicted RBP28.34■■■□□ 2.13
NME3-204ENST00000563498 NUTM2AQ8IVF1 878 aaPredicted RBP28.34■■■□□ 2.13
NME3-204ENST00000563498 NALCNQ8IZF0 1738 aa28.34■■■□□ 2.13
NME3-204ENST00000563498 RXRBP28702 533 aa28.33■■■□□ 2.13
NME3-204ENST00000563498 CDK12Q9NYV4 1490 aaPredicted RBP28.33■■■□□ 2.13
NME3-204ENST00000563498 TRIM52Q96A61 297 aa28.32■■■□□ 2.12
NME3-204ENST00000563498 PTCH1Q13635 1447 aa28.3■■■□□ 2.12
NME3-204ENST00000563498 UPF1Q92900 1129 aaKnown RBP eCLIP28.3■■■□□ 2.12
NME3-204ENST00000563498 VGFO15240 615 aaPredicted RBP28.29■■■□□ 2.12
NME3-204ENST00000563498 AFF2P51816 1311 aa28.28■■■□□ 2.12
NME3-204ENST00000563498 PRAG1Q86YV5 1406 aa28.27■■■□□ 2.12
NME3-204ENST00000563498 PNPLA6Q8IY17 1366 aa28.27■■■□□ 2.12
NME3-204ENST00000563498 C1orf167Q5SNV9 1468 aa28.27■■■□□ 2.12
NME3-204ENST00000563498 LAMC1P11047 1609 aa28.26■■■□□ 2.11
NME3-204ENST00000563498 RPGRIP1LQ68CZ1 1315 aa28.25■■■□□ 2.11
NME3-204ENST00000563498 DDX17Q92841 729 aaKnown RBP28.24■■■□□ 2.11
NME3-204ENST00000563498 HFM1A2PYH4 1435 aa28.24■■■□□ 2.11
NME3-204ENST00000563498 ROBO2Q9HCK4 1378 aa28.23■■■□□ 2.11
NME3-204ENST00000563498 C8orf37Q96NL8 207 aa28.2■■■□□ 2.1
NME3-204ENST00000563498 SOS2Q07890 1332 aaPredicted RBP28.18■■■□□ 2.1
NME3-204ENST00000563498 PPLO60437 1756 aa28.17■■■□□ 2.1
NME3-204ENST00000563498 SLC4A1APQ9BWU0 796 aaKnown RBP28.17■■■□□ 2.1
NME3-204ENST00000563498 RBM6P78332 1123 aaKnown RBP28.16■■■□□ 2.1
NME3-204ENST00000563498 QTRT2Q9H974 415 aaKnown RBP28.15■■■□□ 2.1
NME3-204ENST00000563498 ORAI2Q96SN7 254 aa28.14■■■□□ 2.1
NME3-204ENST00000563498 RGS12O14924 1447 aa28.13■■■□□ 2.09
NME3-204ENST00000563498 NGLY1Q96IV0 654 aa28.11■■■□□ 2.09
NME3-204ENST00000563498 ADAMTS2O95450 1211 aa28.1■■■□□ 2.09
NME3-204ENST00000563498 CDC42BPGQ6DT37 1551 aa28.09■■■□□ 2.09
NME3-204ENST00000563498 COL22A1Q8NFW1 1626 aaPredicted RBP28.07■■■□□ 2.08
NME3-204ENST00000563498 NPHP3Q7Z494 1330 aa28.03■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 109.7 ms