RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 RIMS2Q9UQ26 1411 aa25.38■■□□□ 1.65
CLK3-210ENST00000563112 MYO5BQ9ULV0 1848 aa25.38■■□□□ 1.65
CLK3-210ENST00000563112 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.38■■□□□ 1.65
CLK3-210ENST00000563112 ZFYVE9O95405 1425 aa25.36■■□□□ 1.65
CLK3-210ENST00000563112 KCNA6P17658 529 aa25.35■■□□□ 1.65
CLK3-210ENST00000563112 TRIM52Q96A61 297 aa25.35■■□□□ 1.65
CLK3-210ENST00000563112 HFM1A2PYH4 1435 aa25.35■■□□□ 1.65
CLK3-210ENST00000563112 PLEKHG1Q9ULL1 1385 aa25.33■■□□□ 1.65
CLK3-210ENST00000563112 SENP3Q9H4L4 574 aaPredicted RBP25.31■■□□□ 1.64
CLK3-210ENST00000563112 SPHKAPQ2M3C7 1700 aa25.31■■□□□ 1.64
CLK3-210ENST00000563112 NUTM2DQ5VT03 806 aaPredicted RBP25.28■■□□□ 1.64
CLK3-210ENST00000563112 PROSER2Q86WR7 435 aaPredicted RBP25.28■■□□□ 1.64
CLK3-210ENST00000563112 TBX22Q9Y458 520 aa25.26■■□□□ 1.63
CLK3-210ENST00000563112 HSPA1LP34931 641 aa25.25■■□□□ 1.63
CLK3-210ENST00000563112 ZNF326Q5BKZ1 582 aaKnown RBP25.25■■□□□ 1.63
CLK3-210ENST00000563112 DISP3Q9P2K9 1392 aa25.25■■□□□ 1.63
CLK3-210ENST00000563112 TMEM94Q12767 1356 aa25.24■■□□□ 1.63
CLK3-210ENST00000563112 SLC4A1APQ9BWU0 796 aaKnown RBP25.24■■□□□ 1.63
CLK3-210ENST00000563112 ALKQ9UM73 1620 aa25.23■■□□□ 1.63
CLK3-210ENST00000563112 NKTRP30414 1462 aaKnown RBP25.22■■□□□ 1.63
CLK3-210ENST00000563112 XIRP1Q702N8 1843 aaKnown RBP25.22■■□□□ 1.63
CLK3-210ENST00000563112 NWD1Q149M9 1564 aa25.21■■□□□ 1.63
CLK3-210ENST00000563112 TRPM2O94759 1503 aa25.21■■□□□ 1.63
CLK3-210ENST00000563112 CHD2O14647 1828 aaKnown RBP25.19■■□□□ 1.62
CLK3-210ENST00000563112 DIP2AQ14689 1571 aa25.18■■□□□ 1.62
CLK3-210ENST00000563112 CLTCL1P53675 1640 aa25.17■■□□□ 1.62
CLK3-210ENST00000563112 RBM33Q96EV2 1170 aaKnown RBP25.17■■□□□ 1.62
CLK3-210ENST00000563112 ADAMTS13Q76LX8 1427 aa25.17■■□□□ 1.62
CLK3-210ENST00000563112 PIK3R4Q99570 1358 aa25.17■■□□□ 1.62
CLK3-210ENST00000563112 KIF1BO60333 1816 aa25.15■■□□□ 1.62
CLK3-210ENST00000563112 ACIN1Q9UKV3 1341 aaKnown RBP25.13■■□□□ 1.61
CLK3-210ENST00000563112 MSH6P52701 1360 aa25.13■■□□□ 1.61
CLK3-210ENST00000563112 C14orf37Q86TY3 774 aa25.09■■□□□ 1.61
CLK3-210ENST00000563112 MPHOSPH9Q99550 1183 aa25.08■■□□□ 1.61
CLK3-210ENST00000563112 AMOTL2Q9Y2J4 779 aa25.08■■□□□ 1.61
CLK3-210ENST00000563112 FAM135BQ49AJ0 1406 aa25.08■■□□□ 1.61
CLK3-210ENST00000563112 NCOA3Q9Y6Q9 1424 aa25.08■■□□□ 1.61
CLK3-210ENST00000563112 SETBP1Q9Y6X0 1596 aa25.07■■□□□ 1.6
CLK3-210ENST00000563112 NEXMIFQ5QGS0 1516 aa25.07■■□□□ 1.6
CLK3-210ENST00000563112 VGFO15240 615 aaPredicted RBP25.06■■□□□ 1.6
CLK3-210ENST00000563112 FOXD1Q16676 465 aa25.06■■□□□ 1.6
CLK3-210ENST00000563112 RPGRIP1LQ68CZ1 1315 aa25.06■■□□□ 1.6
CLK3-210ENST00000563112 SETD5Q9C0A6 1442 aa25.05■■□□□ 1.6
CLK3-210ENST00000563112 SLAIN2Q9P270 581 aa25.03■■□□□ 1.6
CLK3-210ENST00000563112 NRXN3Q9Y4C0 1643 aa25.03■■□□□ 1.6
CLK3-210ENST00000563112 PTPRUQ92729 1446 aa25.02■■□□□ 1.6
CLK3-210ENST00000563112 C19orf44Q9H6X5 657 aa25.01■■□□□ 1.59
CLK3-210ENST00000563112 CCDC144AA2RUR9 1427 aa25.01■■□□□ 1.59
CLK3-210ENST00000563112 ATF3P18847 181 aa24.99■■□□□ 1.59
CLK3-210ENST00000563112 ILDR2Q71H61 639 aa24.99■■□□□ 1.59
CLK3-210ENST00000563112 ROBO1Q9Y6N7 1651 aa24.98■■□□□ 1.59
CLK3-210ENST00000563112 METP08581 1390 aa24.98■■□□□ 1.59
CLK3-210ENST00000563112 CADPS2Q86UW7 1296 aa24.98■■□□□ 1.59
CLK3-210ENST00000563112 MED1Q15648 1581 aaPredicted RBP24.97■■□□□ 1.59
CLK3-210ENST00000563112 XRN1Q8IZH2 1706 aaKnown RBP24.95■■□□□ 1.58
CLK3-210ENST00000563112 RAB3GAP2Q9H2M9 1393 aa24.93■■□□□ 1.58
CLK3-210ENST00000563112 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.93■■□□□ 1.58
CLK3-210ENST00000563112 RGL3Q3MIN7 710 aa24.93■■□□□ 1.58
CLK3-210ENST00000563112 PHF23Q9BUL5 403 aaPredicted RBP24.93■■□□□ 1.58
CLK3-210ENST00000563112 PPLO60437 1756 aa24.93■■□□□ 1.58
CLK3-210ENST00000563112 DCCP43146 1447 aa24.87■■□□□ 1.57
CLK3-210ENST00000563112 SPATA31E1Q6ZUB1 1445 aa24.87■■□□□ 1.57
CLK3-210ENST00000563112 ANKRD30BQ9BXX2 1392 aa24.87■■□□□ 1.57
CLK3-210ENST00000563112 PHLPP1O60346 1717 aa24.85■■□□□ 1.57
CLK3-210ENST00000563112 ADGRF5Q8IZF2 1346 aa24.84■■□□□ 1.57
CLK3-210ENST00000563112 SETD1AO15047 1707 aaKnown RBP24.83■■□□□ 1.57
CLK3-210ENST00000563112 SOCS7O14512 581 aa24.83■■□□□ 1.57
CLK3-210ENST00000563112 HRCP23327 699 aa24.83■■□□□ 1.57
CLK3-210ENST00000563112 ADGRL3Q9HAR2 1447 aa24.83■■□□□ 1.57
CLK3-210ENST00000563112 PTCH1Q13635 1447 aa24.82■■□□□ 1.56
CLK3-210ENST00000563112 JCADQ9P266 1359 aa24.8■■□□□ 1.56
CLK3-210ENST00000563112 BRINP3Q76B58 766 aa24.79■■□□□ 1.56
CLK3-210ENST00000563112 IFT172Q9UG01 1749 aa24.78■■□□□ 1.56
CLK3-210ENST00000563112 ROBO2Q9HCK4 1378 aa24.78■■□□□ 1.56
CLK3-210ENST00000563112 MST1RQ04912 1400 aa24.77■■□□□ 1.56
CLK3-210ENST00000563112 PRAG1Q86YV5 1406 aa24.77■■□□□ 1.56
CLK3-210ENST00000563112 AHDC1Q5TGY3 1603 aaPredicted RBP24.75■■□□□ 1.55
CLK3-210ENST00000563112 NALCNQ8IZF0 1738 aa24.75■■□□□ 1.55
CLK3-210ENST00000563112 COL16A1Q07092 1604 aaPredicted RBP24.75■■□□□ 1.55
CLK3-210ENST00000563112 STK26Q9P289 416 aa24.73■■□□□ 1.55
CLK3-210ENST00000563112 PIK3C2GO75747 1445 aa24.72■■□□□ 1.55
CLK3-210ENST00000563112 ASXL1Q8IXJ9 1541 aa24.71■■□□□ 1.55
CLK3-210ENST00000563112 LRPPRCP42704 1394 aaKnown RBP24.7■■□□□ 1.55
CLK3-210ENST00000563112 TMEM132EQ6IEE7 984 aa24.7■■□□□ 1.54
CLK3-210ENST00000563112 SPATA31A6Q5VVP1 1343 aa24.69■■□□□ 1.54
CLK3-210ENST00000563112 C14orf93Q9H972 538 aaKnown RBP24.68■■□□□ 1.54
CLK3-210ENST00000563112 ABCC11Q96J66 1382 aa24.67■■□□□ 1.54
CLK3-210ENST00000563112 MYOM2P54296 1465 aa24.67■■□□□ 1.54
CLK3-210ENST00000563112 C1orf167Q5SNV9 1468 aa24.67■■□□□ 1.54
CLK3-210ENST00000563112 RGS17Q9UGC6 210 aaPredicted RBP24.66■■□□□ 1.54
CLK3-210ENST00000563112 TECPR2O15040 1411 aa24.66■■□□□ 1.54
CLK3-210ENST00000563112 LRRC59Q96AG4 307 aaKnown RBP24.65■■□□□ 1.54
CLK3-210ENST00000563112 NRXN1Q9ULB1 1477 aa24.64■■□□□ 1.54
CLK3-210ENST00000563112 YTHDC2Q9H6S0 1430 aaKnown RBP24.64■■□□□ 1.54
CLK3-210ENST00000563112 CFAP70Q5T0N1 1121 aa24.64■■□□□ 1.54
CLK3-210ENST00000563112 WAPLQ7Z5K2 1190 aa24.64■■□□□ 1.54
CLK3-210ENST00000563112 DHX57Q6P158 1386 aaKnown RBP24.64■■□□□ 1.53
CLK3-210ENST00000563112 NHSL1Q5SYE7 1610 aa24.64■■□□□ 1.53
CLK3-210ENST00000563112 SHPRHQ149N8 1683 aa24.63■■□□□ 1.53
CLK3-210ENST00000563112 MEX3CQ5U5Q3 659 aaKnown RBP24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms