RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 SCAF11Q99590 1463 aaKnown RBP17.01■□□□□ 0.31
LDLR-207ENST00000558013 PTPRTO14522 1441 aa17■□□□□ 0.31
LDLR-207ENST00000558013 TCERG1O14776 1098 aaKnown RBP17■□□□□ 0.31
LDLR-207ENST00000558013 TRPM2O94759 1503 aa16.99■□□□□ 0.31
LDLR-207ENST00000558013 CARD14Q9BXL6 1004 aa16.99■□□□□ 0.31
LDLR-207ENST00000558013 ZMYM4Q5VZL5 1548 aa16.99■□□□□ 0.31
LDLR-207ENST00000558013 CHGAP10645 457 aaKnown RBP16.99■□□□□ 0.31
LDLR-207ENST00000558013 DEKP35659 375 aaKnown RBP16.99■□□□□ 0.31
LDLR-207ENST00000558013 BACH2Q9BYV9 841 aa16.99■□□□□ 0.31
LDLR-207ENST00000558013 UHRF1BP1LA0JNW5 1464 aa16.98■□□□□ 0.31
LDLR-207ENST00000558013 FANCAO15360 1455 aa16.98■□□□□ 0.31
LDLR-207ENST00000558013 CLASP1Q7Z460 1538 aa16.98■□□□□ 0.31
LDLR-207ENST00000558013 APAF1O14727 1248 aa16.98■□□□□ 0.31
LDLR-207ENST00000558013 DMRT2Q9Y5R5 561 aa16.98■□□□□ 0.31
LDLR-207ENST00000558013 SENP3Q9H4L4 574 aaPredicted RBP16.97■□□□□ 0.31
LDLR-207ENST00000558013 IQGAP1P46940 1657 aa16.97■□□□□ 0.31
LDLR-207ENST00000558013 RTEL1-TNFRSF6BF6WH68 1400 aa16.97■□□□□ 0.31
LDLR-207ENST00000558013 GOLGA2Q08379 1002 aa16.96■□□□□ 0.31
LDLR-207ENST00000558013 CDCA8Q53HL2 280 aa16.96■□□□□ 0.31
LDLR-207ENST00000558013 ZNF521Q96K83 1311 aa16.96■□□□□ 0.31
LDLR-207ENST00000558013 TNNT2P45379 298 aaPredicted RBP16.96■□□□□ 0.31
LDLR-207ENST00000558013 KANK1Q14678 1352 aa16.95■□□□□ 0.3
LDLR-207ENST00000558013 SPHKAPQ2M3C7 1700 aa16.95■□□□□ 0.3
LDLR-207ENST00000558013 ATP7AQ04656 1500 aa16.94■□□□□ 0.3
LDLR-207ENST00000558013 ASXL1Q8IXJ9 1541 aa16.94■□□□□ 0.3
LDLR-207ENST00000558013 ADGRL1O94910 1474 aa16.93■□□□□ 0.3
LDLR-207ENST00000558013 LAS1LQ9Y4W2 734 aaKnown RBP16.93■□□□□ 0.3
LDLR-207ENST00000558013 INSRP06213 1382 aa16.93■□□□□ 0.3
LDLR-207ENST00000558013 BCAR3O75815 825 aa16.92■□□□□ 0.3
LDLR-207ENST00000558013 NUTM2DQ5VT03 806 aaPredicted RBP16.92■□□□□ 0.3
LDLR-207ENST00000558013 TRAK1Q9UPV9 953 aa16.92■□□□□ 0.3
LDLR-207ENST00000558013 SLFN5Q08AF3 891 aa16.92■□□□□ 0.3
LDLR-207ENST00000558013 TMEM132EQ6IEE7 984 aa16.92■□□□□ 0.3
LDLR-207ENST00000558013 CEP152O94986 1710 aa16.92■□□□□ 0.3
LDLR-207ENST00000558013 ERVK-7P63135 1459 aa16.9■□□□□ 0.3
LDLR-207ENST00000558013 GGT6Q6P531 493 aa16.9■□□□□ 0.3
LDLR-207ENST00000558013 MYOM1P52179 1685 aa16.9■□□□□ 0.3
LDLR-207ENST00000558013 SYNMO15061 1565 aa16.9■□□□□ 0.3
LDLR-207ENST00000558013 EIF3AQ14152 1382 aaKnown RBP16.89■□□□□ 0.29
LDLR-207ENST00000558013 SLC12A5Q9H2X9 1139 aa16.89■□□□□ 0.29
LDLR-207ENST00000558013 DEPDC5O75140 1603 aa16.89■□□□□ 0.29
LDLR-207ENST00000558013 TET3O43151 1660 aa16.89■□□□□ 0.29
LDLR-207ENST00000558013 MS4A1P11836 297 aa16.89■□□□□ 0.29
LDLR-207ENST00000558013 NEUROD2Q15784 382 aa16.89■□□□□ 0.29
LDLR-207ENST00000558013 KDM2BQ8NHM5 1336 aa16.89■□□□□ 0.29
LDLR-207ENST00000558013 PIK3C2GO75747 1445 aa16.88■□□□□ 0.29
LDLR-207ENST00000558013 STAC3Q96MF2 364 aa16.87■□□□□ 0.29
LDLR-207ENST00000558013 SLC4A3P48751 1232 aa16.87■□□□□ 0.29
LDLR-207ENST00000558013 RRP7AQ9Y3A4 280 aaKnown RBP16.87■□□□□ 0.29
LDLR-207ENST00000558013 MROH1Q8NDA8 1641 aa16.87■□□□□ 0.29
LDLR-207ENST00000558013 CFAP65Q6ZU64 1925 aaKnown RBP16.87■□□□□ 0.29
LDLR-207ENST00000558013 VWDEQ8N2E2 1590 aa16.87■□□□□ 0.29
LDLR-207ENST00000558013 INO80Q9ULG1 1556 aaPredicted RBP16.87■□□□□ 0.29
LDLR-207ENST00000558013 NOS1P29475 1434 aa16.87■□□□□ 0.29
LDLR-207ENST00000558013 ASXL2Q76L83 1435 aa16.86■□□□□ 0.29
LDLR-207ENST00000558013 RGS3P49796 1198 aa16.85■□□□□ 0.29
LDLR-207ENST00000558013 TRMT2AQ8IZ69 625 aaKnown RBP16.85■□□□□ 0.29
LDLR-207ENST00000558013 ABCA6Q8N139 1617 aa16.85■□□□□ 0.29
LDLR-207ENST00000558013 ABCA9Q8IUA7 1624 aa16.84■□□□□ 0.29
LDLR-207ENST00000558013 ARAP3Q8WWN8 1544 aa16.84■□□□□ 0.29
LDLR-207ENST00000558013 MAP3K4Q9Y6R4 1608 aa16.83■□□□□ 0.28
LDLR-207ENST00000558013 NPC1L1Q9UHC9 1359 aa16.83■□□□□ 0.28
LDLR-207ENST00000558013 CENPJQ9HC77 1338 aaPredicted RBP16.83■□□□□ 0.28
LDLR-207ENST00000558013 KDM5AP29375 1690 aaKnown RBP16.82■□□□□ 0.28
LDLR-207ENST00000558013 MROH2AA6NES4 1674 aa16.81■□□□□ 0.28
LDLR-207ENST00000558013 SAFB2Q14151 953 aaKnown RBP eCLIP16.81■□□□□ 0.28
LDLR-207ENST00000558013 RTL5Q5HYW3 569 aaPredicted RBP16.81■□□□□ 0.28
LDLR-207ENST00000558013 CENPQQ7L2Z9 268 aaPredicted RBP16.81■□□□□ 0.28
LDLR-207ENST00000558013 PPRC1Q5VV67 1664 aaKnown RBP16.8■□□□□ 0.28
LDLR-207ENST00000558013 MORC1Q86VD1 984 aa16.8■□□□□ 0.28
LDLR-207ENST00000558013 WWC1Q8IX03 1113 aa16.8■□□□□ 0.28
LDLR-207ENST00000558013 PANK1Q8TE04 598 aa16.79■□□□□ 0.28
LDLR-207ENST00000558013 EFCAB6Q5THR3 1501 aa16.79■□□□□ 0.28
LDLR-207ENST00000558013 NSD3Q9BZ95 1437 aa16.79■□□□□ 0.28
LDLR-207ENST00000558013 KIDINS220Q9ULH0 1771 aa16.79■□□□□ 0.28
LDLR-207ENST00000558013 IGHDP01880 384 aa16.79■□□□□ 0.28
LDLR-207ENST00000558013 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.79■□□□□ 0.28
LDLR-207ENST00000558013 MYOM2P54296 1465 aa16.79■□□□□ 0.28
LDLR-207ENST00000558013 NPATQ14207 1427 aa16.78■□□□□ 0.28
LDLR-207ENST00000558013 E9PSI1 815 aa16.78■□□□□ 0.28
LDLR-207ENST00000558013 RAPGEF3O95398 923 aa16.78■□□□□ 0.28
LDLR-207ENST00000558013 NEFMP07197 916 aa16.78■□□□□ 0.28
LDLR-207ENST00000558013 C8orf34Q49A92 452 aa16.78■□□□□ 0.28
LDLR-207ENST00000558013 NKTRP30414 1462 aaKnown RBP16.78■□□□□ 0.28
LDLR-207ENST00000558013 TNNQ9UQP3 1299 aa16.77■□□□□ 0.28
LDLR-207ENST00000558013 FRAT1Q92837 279 aaPredicted RBP16.77■□□□□ 0.27
LDLR-207ENST00000558013 BCL2L13Q9BXK5 485 aa16.77■□□□□ 0.27
LDLR-207ENST00000558013 C14orf93Q9H972 538 aaKnown RBP16.77■□□□□ 0.27
LDLR-207ENST00000558013 COG6Q9Y2V7 657 aa16.77■□□□□ 0.27
LDLR-207ENST00000558013 MTHFSP49914 203 aa16.76■□□□□ 0.27
LDLR-207ENST00000558013 KIF1BO60333 1816 aa16.75■□□□□ 0.27
LDLR-207ENST00000558013 KIAA1210Q9ULL0 1709 aa16.75■□□□□ 0.27
LDLR-207ENST00000558013 TCP11L2Q8N4U5 519 aa16.75■□□□□ 0.27
LDLR-207ENST00000558013 NRXN1Q9ULB1 1477 aa16.74■□□□□ 0.27
LDLR-207ENST00000558013 CABP2Q9NPB3 220 aa16.74■□□□□ 0.27
LDLR-207ENST00000558013 NPM1P06748 294 aaKnown RBP eCLIP16.73■□□□□ 0.27
LDLR-207ENST00000558013 ZNF518AQ6AHZ1 1483 aa16.72■□□□□ 0.27
LDLR-207ENST00000558013 CANXP27824 592 aaKnown RBP16.72■□□□□ 0.27
LDLR-207ENST00000558013 FAM161AQ3B820 660 aa16.72■□□□□ 0.27
LDLR-207ENST00000558013 STK26Q9P289 416 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms