RNA–Protein interactions for RNA: ENST00000557588.5

ABCD4-228, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 3 BASIC

Gene ABCD4, Length 763 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-228ENST00000557588 ZFYVE9O95405 1425 aa28.84■■■□□ 2.21
ABCD4-228ENST00000557588 RBM33Q96EV2 1170 aaKnown RBP28.83■■■□□ 2.21
ABCD4-228ENST00000557588 CHD2O14647 1828 aaKnown RBP28.83■■■□□ 2.21
ABCD4-228ENST00000557588 SLC52A1Q9NWF4 448 aa28.82■■■□□ 2.2
ABCD4-228ENST00000557588 SETD1AO15047 1707 aaKnown RBP28.81■■■□□ 2.2
ABCD4-228ENST00000557588 MYO5BQ9ULV0 1848 aa28.8■■■□□ 2.2
ABCD4-228ENST00000557588 GCC2Q8IWJ2 1684 aa28.8■■■□□ 2.2
ABCD4-228ENST00000557588 COL16A1Q07092 1604 aaPredicted RBP28.8■■■□□ 2.2
ABCD4-228ENST00000557588 PLEKHG1Q9ULL1 1385 aa28.79■■■□□ 2.2
ABCD4-228ENST00000557588 JCADQ9P266 1359 aa28.78■■■□□ 2.2
ABCD4-228ENST00000557588 CHIC2Q9UKJ5 165 aa28.78■■■□□ 2.2
ABCD4-228ENST00000557588 TMEM131LA2VDJ0 1609 aa28.76■■■□□ 2.2
ABCD4-228ENST00000557588 SLAIN2Q9P270 581 aa28.75■■■□□ 2.19
ABCD4-228ENST00000557588 APLP2Q06481 763 aa28.73■■■□□ 2.19
ABCD4-228ENST00000557588 RIMS2Q9UQ26 1411 aa28.72■■■□□ 2.19
ABCD4-228ENST00000557588 NCOA3Q9Y6Q9 1424 aa28.72■■■□□ 2.19
ABCD4-228ENST00000557588 BCANQ96GW7 911 aa28.71■■■□□ 2.19
ABCD4-228ENST00000557588 ANKRD50Q9ULJ7 1429 aa28.7■■■□□ 2.19
ABCD4-228ENST00000557588 DIP2AQ14689 1571 aa28.7■■■□□ 2.18
ABCD4-228ENST00000557588 UNC13BO14795 1591 aa28.69■■■□□ 2.18
ABCD4-228ENST00000557588 LRP6O75581 1613 aa28.69■■■□□ 2.18
ABCD4-228ENST00000557588 AHDC1Q5TGY3 1603 aaPredicted RBP28.68■■■□□ 2.18
ABCD4-228ENST00000557588 SHPRHQ149N8 1683 aa28.66■■■□□ 2.18
ABCD4-228ENST00000557588 PPP1R15AO75807 674 aaPredicted RBP28.65■■■□□ 2.18
ABCD4-228ENST00000557588 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.64■■■□□ 2.18
ABCD4-228ENST00000557588 ADAMTS13Q76LX8 1427 aa28.64■■■□□ 2.18
ABCD4-228ENST00000557588 TBX22Q9Y458 520 aa28.64■■■□□ 2.18
ABCD4-228ENST00000557588 HDGFP51858 240 aaKnown RBP28.63■■■□□ 2.17
ABCD4-228ENST00000557588 SPATA31A6Q5VVP1 1343 aa28.63■■■□□ 2.17
ABCD4-228ENST00000557588 E9PCH4 1651 aa28.61■■■□□ 2.17
ABCD4-228ENST00000557588 PIK3R4Q99570 1358 aa28.61■■■□□ 2.17
ABCD4-228ENST00000557588 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.58■■■□□ 2.17
ABCD4-228ENST00000557588 TRPM2O94759 1503 aa28.56■■■□□ 2.16
ABCD4-228ENST00000557588 IQGAP3Q86VI3 1631 aa28.56■■■□□ 2.16
ABCD4-228ENST00000557588 CADPS2Q86UW7 1296 aa28.55■■■□□ 2.16
ABCD4-228ENST00000557588 ZNF772Q68DY9 489 aaPredicted RBP28.53■■■□□ 2.16
ABCD4-228ENST00000557588 C14orf37Q86TY3 774 aa28.53■■■□□ 2.16
ABCD4-228ENST00000557588 C19orf44Q9H6X5 657 aa28.53■■■□□ 2.16
ABCD4-228ENST00000557588 FAM50AQ14320 339 aaKnown RBP28.52■■■□□ 2.16
ABCD4-228ENST00000557588 DCCP43146 1447 aa28.51■■■□□ 2.15
ABCD4-228ENST00000557588 MEX3CQ5U5Q3 659 aaKnown RBP28.5■■■□□ 2.15
ABCD4-228ENST00000557588 XRN1Q8IZH2 1706 aaKnown RBP28.49■■■□□ 2.15
ABCD4-228ENST00000557588 ATF3P18847 181 aa28.49■■■□□ 2.15
ABCD4-228ENST00000557588 CHGAP10645 457 aaKnown RBP28.48■■■□□ 2.15
ABCD4-228ENST00000557588 PTPRUQ92729 1446 aa28.48■■■□□ 2.15
ABCD4-228ENST00000557588 NRXN3Q9Y4C0 1643 aa28.47■■■□□ 2.15
ABCD4-228ENST00000557588 CDK12Q9NYV4 1490 aaPredicted RBP28.46■■■□□ 2.15
ABCD4-228ENST00000557588 NUTM2DQ5VT03 806 aaPredicted RBP28.46■■■□□ 2.15
ABCD4-228ENST00000557588 UPF1Q92900 1129 aaKnown RBP eCLIP28.46■■■□□ 2.15
ABCD4-228ENST00000557588 ASXL1Q8IXJ9 1541 aa28.46■■■□□ 2.15
ABCD4-228ENST00000557588 NHSL1Q5SYE7 1610 aa28.45■■■□□ 2.14
ABCD4-228ENST00000557588 BRINP3Q76B58 766 aa28.45■■■□□ 2.14
ABCD4-228ENST00000557588 ROCK1Q13464 1354 aa28.45■■■□□ 2.14
ABCD4-228ENST00000557588 SETBP1Q9Y6X0 1596 aa28.45■■■□□ 2.14
ABCD4-228ENST00000557588 TRIM52Q96A61 297 aa28.42■■■□□ 2.14
ABCD4-228ENST00000557588 AMOTL2Q9Y2J4 779 aa28.41■■■□□ 2.14
ABCD4-228ENST00000557588 SETD5Q9C0A6 1442 aa28.41■■■□□ 2.14
ABCD4-228ENST00000557588 MST1RQ04912 1400 aa28.39■■■□□ 2.14
ABCD4-228ENST00000557588 RXRBP28702 533 aa28.37■■■□□ 2.13
ABCD4-228ENST00000557588 SPHKAPQ2M3C7 1700 aa28.36■■■□□ 2.13
ABCD4-228ENST00000557588 NUP155O75694 1391 aa28.33■■■□□ 2.13
ABCD4-228ENST00000557588 NUTM2BA6NNL0 878 aaPredicted RBP28.32■■■□□ 2.12
ABCD4-228ENST00000557588 NUTM2EB1AL46 878 aaPredicted RBP28.32■■■□□ 2.12
ABCD4-228ENST00000557588 NUTM2AQ8IVF1 878 aaPredicted RBP28.32■■■□□ 2.12
ABCD4-228ENST00000557588 AFF2P51816 1311 aa28.32■■■□□ 2.12
ABCD4-228ENST00000557588 NALCNQ8IZF0 1738 aa28.32■■■□□ 2.12
ABCD4-228ENST00000557588 ADGRL3Q9HAR2 1447 aa28.31■■■□□ 2.12
ABCD4-228ENST00000557588 RGS12O14924 1447 aa28.28■■■□□ 2.12
ABCD4-228ENST00000557588 METP08581 1390 aa28.27■■■□□ 2.12
ABCD4-228ENST00000557588 PNPLA6Q8IY17 1366 aa28.26■■■□□ 2.12
ABCD4-228ENST00000557588 LAMC1P11047 1609 aa28.26■■■□□ 2.11
ABCD4-228ENST00000557588 NEXMIFQ5QGS0 1516 aa28.25■■■□□ 2.11
ABCD4-228ENST00000557588 LRRC59Q96AG4 307 aaKnown RBP28.25■■■□□ 2.11
ABCD4-228ENST00000557588 CLTCL1P53675 1640 aa28.21■■■□□ 2.11
ABCD4-228ENST00000557588 RBM6P78332 1123 aaKnown RBP28.18■■■□□ 2.1
ABCD4-228ENST00000557588 C8orf37Q96NL8 207 aa28.18■■■□□ 2.1
ABCD4-228ENST00000557588 ZNF326Q5BKZ1 582 aaKnown RBP28.17■■■□□ 2.1
ABCD4-228ENST00000557588 PTCH1Q13635 1447 aa28.17■■■□□ 2.1
ABCD4-228ENST00000557588 C1orf167Q5SNV9 1468 aa28.16■■■□□ 2.1
ABCD4-228ENST00000557588 DDX17Q92841 729 aaKnown RBP28.15■■■□□ 2.1
ABCD4-228ENST00000557588 SRCAPQ6ZRS2 3230 aa28.14■■■□□ 2.1
ABCD4-228ENST00000557588 QTRT2Q9H974 415 aaKnown RBP28.14■■■□□ 2.1
ABCD4-228ENST00000557588 PRAG1Q86YV5 1406 aa28.14■■■□□ 2.1
ABCD4-228ENST00000557588 KIF1BO60333 1816 aa28.13■■■□□ 2.09
ABCD4-228ENST00000557588 COL22A1Q8NFW1 1626 aaPredicted RBP28.09■■■□□ 2.09
ABCD4-228ENST00000557588 ITGAEP38570 1179 aa28.08■■■□□ 2.09
ABCD4-228ENST00000557588 SOS2Q07890 1332 aaPredicted RBP28.08■■■□□ 2.09
ABCD4-228ENST00000557588 NGLY1Q96IV0 654 aa28.06■■■□□ 2.08
ABCD4-228ENST00000557588 ATAD2Q6PL18 1390 aa28.06■■■□□ 2.08
ABCD4-228ENST00000557588 ROBO2Q9HCK4 1378 aa28.06■■■□□ 2.08
ABCD4-228ENST00000557588 ADAMTS2O95450 1211 aa28.05■■■□□ 2.08
ABCD4-228ENST00000557588 EP400Q96L91 3159 aa28.01■■■□□ 2.07
ABCD4-228ENST00000557588 ORAI2Q96SN7 254 aa28■■■□□ 2.07
ABCD4-228ENST00000557588 HFM1A2PYH4 1435 aa28■■■□□ 2.07
ABCD4-228ENST00000557588 ATRNO75882 1429 aa28■■■□□ 2.07
ABCD4-228ENST00000557588 CDC42BPGQ6DT37 1551 aa27.99■■■□□ 2.07
ABCD4-228ENST00000557588 FNBP4Q8N3X1 1017 aaPredicted RBP27.99■■■□□ 2.07
ABCD4-228ENST00000557588 USP21Q9UK80 565 aa27.99■■■□□ 2.07
ABCD4-228ENST00000557588 MYOM2P54296 1465 aa27.99■■■□□ 2.07
ABCD4-228ENST00000557588 TRPC5Q9UL62 973 aaPredicted RBP27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms