RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 FECHP22830 423 aa11.34□□□□□ -0.59
SCFD1-217ENST00000555953 PXYLP1Q8TE99 480 aa11.34□□□□□ -0.59
SCFD1-217ENST00000555953 IRX2Q9BZI1 471 aaPredicted RBP11.34□□□□□ -0.59
SCFD1-217ENST00000555953 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.32□□□□□ -0.6
SCFD1-217ENST00000555953 GNPATO15228 680 aa11.32□□□□□ -0.6
SCFD1-217ENST00000555953 OATP04181 439 aa11.32□□□□□ -0.6
SCFD1-217ENST00000555953 NKX2-3Q8TAU0 364 aa11.32□□□□□ -0.6
SCFD1-217ENST00000555953 PPP1R18Q6NYC8 613 aa11.31□□□□□ -0.6
SCFD1-217ENST00000555953 METTL3Q86U44 580 aaKnown RBP11.31□□□□□ -0.6
SCFD1-217ENST00000555953 VSIG10Q8N0Z9 540 aa11.31□□□□□ -0.6
SCFD1-217ENST00000555953 PRR14Q9BWN1 585 aa11.31□□□□□ -0.6
SCFD1-217ENST00000555953 PCDHB3Q9Y5E6 796 aa11.3□□□□□ -0.6
SCFD1-217ENST00000555953 SLC10A3P09131 477 aa11.29□□□□□ -0.6
SCFD1-217ENST00000555953 CFHP08603 1231 aa11.28□□□□□ -0.6
SCFD1-217ENST00000555953 BLOC1S3Q6QNY0 202 aa11.28□□□□□ -0.6
SCFD1-217ENST00000555953 ZPR1O75312 459 aa11.27□□□□□ -0.61
SCFD1-217ENST00000555953 ACTN4O43707 911 aaKnown RBP11.26□□□□□ -0.61
SCFD1-217ENST00000555953 KMT5BQ4FZB7 885 aa11.26□□□□□ -0.61
SCFD1-217ENST00000555953 GPIHBP1Q8IV16 184 aa11.26□□□□□ -0.61
SCFD1-217ENST00000555953 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.26□□□□□ -0.61
SCFD1-217ENST00000555953 NLRP7Q8WX94 980 aa11.23□□□□□ -0.61
SCFD1-217ENST00000555953 PRKD2Q9BZL6 878 aa11.23□□□□□ -0.61
SCFD1-217ENST00000555953 TLL1O43897 1013 aa11.22□□□□□ -0.61
SCFD1-217ENST00000555953 PHOX2BQ99453 314 aa11.2□□□□□ -0.62
SCFD1-217ENST00000555953 GGCXP38435 758 aa11.19□□□□□ -0.62
SCFD1-217ENST00000555953 DAXXQ9UER7 740 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-217ENST00000555953 TMUB1Q9BVT8 246 aa11.17□□□□□ -0.62
SCFD1-217ENST00000555953 V9GY48 417 aaPredicted RBP11.17□□□□□ -0.62
SCFD1-217ENST00000555953 RSPH4AQ5TD94 716 aa11.16□□□□□ -0.62
SCFD1-217ENST00000555953 PUS10Q3MIT2 529 aaKnown RBP11.15□□□□□ -0.62
SCFD1-217ENST00000555953 RDH13Q8NBN7 331 aa11.15□□□□□ -0.62
SCFD1-217ENST00000555953 DDX11L8A8MPP1 907 aa11.14□□□□□ -0.63
SCFD1-217ENST00000555953 RNF223E7ERA6 249 aa11.14□□□□□ -0.63
SCFD1-217ENST00000555953 NR1I2O75469 434 aa11.14□□□□□ -0.63
SCFD1-217ENST00000555953 TULP1O00294 542 aaPredicted RBP11.13□□□□□ -0.63
SCFD1-217ENST00000555953 S1PR4O95977 384 aa11.12□□□□□ -0.63
SCFD1-217ENST00000555953 Q6ZNB5 142 aa11.12□□□□□ -0.63
SCFD1-217ENST00000555953 GFRA3O60609 400 aa11.11□□□□□ -0.63
SCFD1-217ENST00000555953 ADH1BP00325 375 aa11.11□□□□□ -0.63
SCFD1-217ENST00000555953 MAP2K5Q13163 448 aa11.11□□□□□ -0.63
SCFD1-217ENST00000555953 SCUBE3Q8IX30 993 aa11.11□□□□□ -0.63
SCFD1-217ENST00000555953 PPEF1O14829 653 aaPredicted RBP11.1□□□□□ -0.63
SCFD1-217ENST00000555953 LAPTM4AQ15012 233 aa11.1□□□□□ -0.63
SCFD1-217ENST00000555953 EMID1Q96A84 441 aaPredicted RBP11.1□□□□□ -0.63
SCFD1-217ENST00000555953 FUT2Q10981 343 aa11.09□□□□□ -0.63
SCFD1-217ENST00000555953 SULF1Q8IWU6 871 aa11.09□□□□□ -0.63
SCFD1-217ENST00000555953 GCGRP47871 477 aa11.08□□□□□ -0.64
SCFD1-217ENST00000555953 IRF6O14896 467 aa11.07□□□□□ -0.64
SCFD1-217ENST00000555953 MORN1Q5T089 497 aa11.07□□□□□ -0.64
SCFD1-217ENST00000555953 ANKLE1Q8NAG6 615 aa11.07□□□□□ -0.64
SCFD1-217ENST00000555953 SLC6A16Q9GZN6 736 aa11.06□□□□□ -0.64
SCFD1-217ENST00000555953 LCE2BO14633 110 aa11.05□□□□□ -0.64
SCFD1-217ENST00000555953 ATP6V1AP38606 617 aa11.05□□□□□ -0.64
SCFD1-217ENST00000555953 SLC19A1P41440 591 aa11.05□□□□□ -0.64
SCFD1-217ENST00000555953 SPSB2Q99619 263 aa11.05□□□□□ -0.64
SCFD1-217ENST00000555953 NRG2O14511 850 aaPredicted RBP11.04□□□□□ -0.64
SCFD1-217ENST00000555953 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.04□□□□□ -0.64
SCFD1-217ENST00000555953 MINK1Q8N4C8 1332 aaPredicted RBP11.04□□□□□ -0.64
SCFD1-217ENST00000555953 THAP11Q96EK4 314 aa11.03□□□□□ -0.64
SCFD1-217ENST00000555953 PDZRN3Q9UPQ7 1066 aa11.03□□□□□ -0.64
SCFD1-217ENST00000555953 SLC27A5Q9Y2P5 690 aa11.03□□□□□ -0.64
SCFD1-217ENST00000555953 LIAT1Q6ZQX7 453 aa11.02□□□□□ -0.65
SCFD1-217ENST00000555953 CCDC102AQ96A19 550 aa11.02□□□□□ -0.65
SCFD1-217ENST00000555953 MDM2Q00987 491 aaPredicted RBP11.01□□□□□ -0.65
SCFD1-217ENST00000555953 PLA2G2CQ5R387 149 aa11.01□□□□□ -0.65
SCFD1-217ENST00000555953 CD46P15529 392 aa11□□□□□ -0.65
SCFD1-217ENST00000555953 SPRYD7Q5W111 196 aa11□□□□□ -0.65
SCFD1-217ENST00000555953 TRIM67Q6ZTA4 783 aa11□□□□□ -0.65
SCFD1-217ENST00000555953 LMOD2Q6P5Q4 547 aa10.98□□□□□ -0.65
SCFD1-217ENST00000555953 FMNL1O95466 1100 aaPredicted RBP10.97□□□□□ -0.65
SCFD1-217ENST00000555953 TRAF7Q6Q0C0 670 aa10.97□□□□□ -0.65
SCFD1-217ENST00000555953 ZNF598Q86UK7 904 aaKnown RBP10.97□□□□□ -0.65
SCFD1-217ENST00000555953 FAM160A2Q8N612 972 aaPredicted RBP10.97□□□□□ -0.65
SCFD1-217ENST00000555953 BRICD5Q6PL45 260 aa10.96□□□□□ -0.65
SCFD1-217ENST00000555953 SALL2Q9Y467 1007 aaPredicted RBP10.96□□□□□ -0.65
SCFD1-217ENST00000555953 RNF19BQ6ZMZ0 732 aa10.95□□□□□ -0.66
SCFD1-217ENST00000555953 PRDM9Q9NQV7 894 aa10.95□□□□□ -0.66
SCFD1-217ENST00000555953 GRIPAP1Q4V328 841 aa10.94□□□□□ -0.66
SCFD1-217ENST00000555953 ZNF697Q5TEC3 545 aa10.94□□□□□ -0.66
SCFD1-217ENST00000555953 KDM4AO75164 1064 aa10.93□□□□□ -0.66
SCFD1-217ENST00000555953 GPCPD1Q9NPB8 672 aa10.93□□□□□ -0.66
SCFD1-217ENST00000555953 FCF1Q9Y324 198 aaKnown RBP10.92□□□□□ -0.66
SCFD1-217ENST00000555953 CLCN1P35523 988 aa10.91□□□□□ -0.66
SCFD1-217ENST00000555953 HLA-CQ95604 372 aa10.91□□□□□ -0.66
SCFD1-217ENST00000555953 FAM217BQ9NTX9 383 aaPredicted RBP10.91□□□□□ -0.66
SCFD1-217ENST00000555953 PRR20EP86478 221 aa10.9□□□□□ -0.66
SCFD1-217ENST00000555953 PRR20CP86479 221 aa10.9□□□□□ -0.66
SCFD1-217ENST00000555953 PRR20DP86480 221 aa10.9□□□□□ -0.66
SCFD1-217ENST00000555953 PRR20BP86481 221 aa10.9□□□□□ -0.66
SCFD1-217ENST00000555953 PRR20AP86496 221 aa10.9□□□□□ -0.66
SCFD1-217ENST00000555953 MSS51Q4VC12 460 aa10.9□□□□□ -0.66
SCFD1-217ENST00000555953 GDF9O60383 454 aa10.89□□□□□ -0.67
SCFD1-217ENST00000555953 Q3C1V9 767 aa10.89□□□□□ -0.67
SCFD1-217ENST00000555953 BARGINQ6ZT62 677 aa10.89□□□□□ -0.67
SCFD1-217ENST00000555953 REPIN1Q9BWE0 567 aaKnown RBP10.89□□□□□ -0.67
SCFD1-217ENST00000555953 TNFRSF10AO00220 468 aa10.88□□□□□ -0.67
SCFD1-217ENST00000555953 ZMYND10O75800 440 aa10.88□□□□□ -0.67
SCFD1-217ENST00000555953 KRI1Q8N9T8 703 aaKnown RBP10.88□□□□□ -0.67
SCFD1-217ENST00000555953 HOXA2O43364 376 aa10.87□□□□□ -0.67
SCFD1-217ENST00000555953 RPIAP49247 311 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms