RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 TUSC1Q2TAM9 212 aa9.85□□□□□ -0.83
SCFD1-208ENST00000553278 C6orf132Q5T0Z8 1188 aa9.85□□□□□ -0.83
SCFD1-208ENST00000553278 SOCS7O14512 581 aa9.84□□□□□ -0.83
SCFD1-208ENST00000553278 TMCO4Q5TGY1 634 aa9.84□□□□□ -0.83
SCFD1-208ENST00000553278 TTC13Q8NBP0 860 aa9.84□□□□□ -0.83
SCFD1-208ENST00000553278 MTMR14Q8NCE2 650 aa9.84□□□□□ -0.83
SCFD1-208ENST00000553278 PCDHGA4Q9Y5G9 962 aa9.84□□□□□ -0.83
SCFD1-208ENST00000553278 ST18O60284 1047 aa9.83□□□□□ -0.84
SCFD1-208ENST00000553278 ABL2P42684 1182 aa9.83□□□□□ -0.84
SCFD1-208ENST00000553278 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.82□□□□□ -0.84
SCFD1-208ENST00000553278 FOSBP53539 338 aa9.82□□□□□ -0.84
SCFD1-208ENST00000553278 SPIRE2Q8WWL2 714 aa9.82□□□□□ -0.84
SCFD1-208ENST00000553278 SPTLC1O15269 473 aa9.81□□□□□ -0.84
SCFD1-208ENST00000553278 FBXO31Q5XUX0 539 aaPredicted RBP9.81□□□□□ -0.84
SCFD1-208ENST00000553278 NUTM1Q86Y26 1132 aa9.81□□□□□ -0.84
SCFD1-208ENST00000553278 SPNS2Q8IVW8 549 aa9.81□□□□□ -0.84
SCFD1-208ENST00000553278 ZDHHC16Q969W1 377 aa9.81□□□□□ -0.84
SCFD1-208ENST00000553278 PATL2C9JE40 543 aaKnown RBP9.8□□□□□ -0.84
SCFD1-208ENST00000553278 PRSS12P56730 875 aa9.8□□□□□ -0.84
SCFD1-208ENST00000553278 IRF5Q13568 498 aa9.8□□□□□ -0.84
SCFD1-208ENST00000553278 SULF1Q8IWU6 871 aa9.8□□□□□ -0.84
SCFD1-208ENST00000553278 GLMNQ92990 594 aa9.8□□□□□ -0.84
SCFD1-208ENST00000553278 GZF1Q9H116 711 aaPredicted RBP9.8□□□□□ -0.84
SCFD1-208ENST00000553278 RSBN1LQ6PCB5 846 aaPredicted RBP9.79□□□□□ -0.84
SCFD1-208ENST00000553278 CD46P15529 392 aa9.78□□□□□ -0.84
SCFD1-208ENST00000553278 GJA5P36382 358 aa9.78□□□□□ -0.84
SCFD1-208ENST00000553278 ZNF454Q8N9F8 522 aa9.78□□□□□ -0.84
SCFD1-208ENST00000553278 AP1G2O75843 785 aa9.77□□□□□ -0.85
SCFD1-208ENST00000553278 CSPP1Q1MSJ5 1256 aa9.77□□□□□ -0.85
SCFD1-208ENST00000553278 CDCA7LQ96GN5 454 aa9.77□□□□□ -0.85
SCFD1-208ENST00000553278 TBC1D2BQ9UPU7 963 aa9.77□□□□□ -0.85
SCFD1-208ENST00000553278 KDM4FA0A1W2PPD8 638 aa9.76□□□□□ -0.85
SCFD1-208ENST00000553278 RCCD1A6NED2 376 aa9.76□□□□□ -0.85
SCFD1-208ENST00000553278 RGS22Q8NE09 1264 aa9.76□□□□□ -0.85
SCFD1-208ENST00000553278 POM121CA8CG34 1229 aa9.75□□□□□ -0.85
SCFD1-208ENST00000553278 LILRB3O75022 631 aa9.75□□□□□ -0.85
SCFD1-208ENST00000553278 MFAP1P55081 439 aaKnown RBP9.75□□□□□ -0.85
SCFD1-208ENST00000553278 ZNF710Q8N1W2 664 aa9.75□□□□□ -0.85
SCFD1-208ENST00000553278 MOXD2PA6NHM9 499 aa9.74□□□□□ -0.85
SCFD1-208ENST00000553278 NUTM2BA6NNL0 878 aaPredicted RBP9.74□□□□□ -0.85
SCFD1-208ENST00000553278 NUTM2EB1AL46 878 aaPredicted RBP9.74□□□□□ -0.85
SCFD1-208ENST00000553278 NUTM2DQ5VT03 806 aaPredicted RBP9.74□□□□□ -0.85
SCFD1-208ENST00000553278 NUTM2AQ8IVF1 878 aaPredicted RBP9.74□□□□□ -0.85
SCFD1-208ENST00000553278 USP17L8P0C7I0 530 aa9.73□□□□□ -0.85
SCFD1-208ENST00000553278 QPCTQ16769 361 aa9.73□□□□□ -0.85
SCFD1-208ENST00000553278 PBXIP1Q96AQ6 731 aa9.73□□□□□ -0.85
SCFD1-208ENST00000553278 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.73□□□□□ -0.85
SCFD1-208ENST00000553278 MTMR7Q9Y216 660 aa9.73□□□□□ -0.85
SCFD1-208ENST00000553278 DDX11L8A8MPP1 907 aa9.72□□□□□ -0.85
SCFD1-208ENST00000553278 ADAM33Q9BZ11 813 aa9.72□□□□□ -0.85
SCFD1-208ENST00000553278 NDUFB9Q9Y6M9 179 aa9.72□□□□□ -0.85
SCFD1-208ENST00000553278 WASHC4Q2M389 1173 aa9.71□□□□□ -0.86
SCFD1-208ENST00000553278 RTL5Q5HYW3 569 aaPredicted RBP9.71□□□□□ -0.86
SCFD1-208ENST00000553278 PRPF38BQ5VTL8 546 aaKnown RBP9.71□□□□□ -0.86
SCFD1-208ENST00000553278 EYA1Q99502 592 aa9.71□□□□□ -0.86
SCFD1-208ENST00000553278 CSB-PGBD3P0DP91 1061 aa9.7□□□□□ -0.86
SCFD1-208ENST00000553278 NDUFV2P19404 249 aa9.7□□□□□ -0.86
SCFD1-208ENST00000553278 DNAJB2P25686 324 aa9.7□□□□□ -0.86
SCFD1-208ENST00000553278 KCNA1Q09470 495 aa9.7□□□□□ -0.86
SCFD1-208ENST00000553278 HDGFL1Q5TGJ6 251 aa9.7□□□□□ -0.86
SCFD1-208ENST00000553278 USTQ9Y2C2 406 aa9.7□□□□□ -0.86
SCFD1-208ENST00000553278 BRD1O95696 1058 aa9.69□□□□□ -0.86
SCFD1-208ENST00000553278 PCDHB15Q9Y5E8 787 aa9.69□□□□□ -0.86
SCFD1-208ENST00000553278 NBPF26B4DH59 902 aa9.67□□□□□ -0.86
SCFD1-208ENST00000553278 ZBTB3Q9H5J0 574 aa9.67□□□□□ -0.86
SCFD1-208ENST00000553278 RFX1P22670 979 aa9.66□□□□□ -0.86
SCFD1-208ENST00000553278 CABLES1Q8TDN4 633 aa9.66□□□□□ -0.86
SCFD1-208ENST00000553278 FAM198AQ9UFP1 575 aa9.66□□□□□ -0.86
SCFD1-208ENST00000553278 KDM4AO75164 1064 aa9.65□□□□□ -0.86
SCFD1-208ENST00000553278 NUDT7P0C024 238 aa9.65□□□□□ -0.86
SCFD1-208ENST00000553278 USP46P62068 366 aa9.65□□□□□ -0.86
SCFD1-208ENST00000553278 NUDT18Q6ZVK8 323 aa9.65□□□□□ -0.86
SCFD1-208ENST00000553278 RDH13Q8NBN7 331 aa9.65□□□□□ -0.86
SCFD1-208ENST00000553278 GJD4Q96KN9 370 aaPredicted RBP9.65□□□□□ -0.86
SCFD1-208ENST00000553278 TMEM134Q9H6X4 195 aa9.65□□□□□ -0.86
SCFD1-208ENST00000553278 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.64□□□□□ -0.87
SCFD1-208ENST00000553278 RSPH4AQ5TD94 716 aa9.64□□□□□ -0.87
SCFD1-208ENST00000553278 CFAP70Q5T0N1 1121 aa9.63□□□□□ -0.87
SCFD1-208ENST00000553278 FOXD4L5Q5VV16 416 aaPredicted RBP9.63□□□□□ -0.87
SCFD1-208ENST00000553278 ADAMTS19Q8TE59 1207 aa9.63□□□□□ -0.87
SCFD1-208ENST00000553278 FOXD4L4Q8WXT5 416 aaPredicted RBP9.63□□□□□ -0.87
SCFD1-208ENST00000553278 TSKSQ9UJT2 592 aa9.63□□□□□ -0.87
SCFD1-208ENST00000553278 PNMA3Q9UL41 463 aa9.63□□□□□ -0.87
SCFD1-208ENST00000553278 COL9A1P20849 921 aa9.62□□□□□ -0.87
SCFD1-208ENST00000553278 RBM25P49756 843 aaKnown RBP9.62□□□□□ -0.87
SCFD1-208ENST00000553278 DOK7Q18PE1 504 aa9.62□□□□□ -0.87
SCFD1-208ENST00000553278 PPP4R3BQ5MIZ7 849 aa9.62□□□□□ -0.87
SCFD1-208ENST00000553278 PACS2Q86VP3 889 aa9.62□□□□□ -0.87
SCFD1-208ENST00000553278 PPP1R12CQ9BZL4 782 aa9.62□□□□□ -0.87
SCFD1-208ENST00000553278 PPP1R3GB7ZBB8 358 aa9.61□□□□□ -0.87
SCFD1-208ENST00000553278 RIMBP2O15034 1052 aa9.61□□□□□ -0.87
SCFD1-208ENST00000553278 FDX1P10109 184 aa9.61□□□□□ -0.87
SCFD1-208ENST00000553278 TATDN2Q93075 761 aa9.61□□□□□ -0.87
SCFD1-208ENST00000553278 ARSIQ5FYB1 569 aa9.6□□□□□ -0.87
SCFD1-208ENST00000553278 HELBQ8NG08 1087 aaPredicted RBP9.6□□□□□ -0.87
SCFD1-208ENST00000553278 BCL2L12Q9HB09 334 aa9.6□□□□□ -0.87
SCFD1-208ENST00000553278 PSDA5PKW4 1024 aaPredicted RBP9.59□□□□□ -0.87
SCFD1-208ENST00000553278 HOXA2O43364 376 aa9.59□□□□□ -0.87
SCFD1-208ENST00000553278 SRPK2P78362 688 aaKnown RBP9.59□□□□□ -0.87
SCFD1-208ENST00000553278 VAC14Q08AM6 782 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms