RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 KANK1Q14678 1352 aa20.51■□□□□ 0.87
VPS29-211ENST00000553128 BCANQ96GW7 911 aa20.51■□□□□ 0.87
VPS29-211ENST00000553128 SRCAPQ6ZRS2 3230 aa20.48■□□□□ 0.87
VPS29-211ENST00000553128 DAPK1P53355 1430 aa20.47■□□□□ 0.87
VPS29-211ENST00000553128 CHIC2Q9UKJ5 165 aa20.47■□□□□ 0.87
VPS29-211ENST00000553128 ZFYVE9O95405 1425 aa20.46■□□□□ 0.87
VPS29-211ENST00000553128 MEX3CQ5U5Q3 659 aaKnown RBP20.46■□□□□ 0.87
VPS29-211ENST00000553128 CHD2O14647 1828 aaKnown RBP20.45■□□□□ 0.86
VPS29-211ENST00000553128 SPATA31A6Q5VVP1 1343 aa20.45■□□□□ 0.86
VPS29-211ENST00000553128 PTPN23Q9H3S7 1636 aa20.45■□□□□ 0.86
VPS29-211ENST00000553128 ZNF772Q68DY9 489 aaPredicted RBP20.44■□□□□ 0.86
VPS29-211ENST00000553128 PLEKHG1Q9ULL1 1385 aa20.44■□□□□ 0.86
VPS29-211ENST00000553128 FGD6Q6ZV73 1430 aa20.44■□□□□ 0.86
VPS29-211ENST00000553128 SLC52A1Q9NWF4 448 aa20.43■□□□□ 0.86
VPS29-211ENST00000553128 RIMS2Q9UQ26 1411 aa20.42■□□□□ 0.86
VPS29-211ENST00000553128 MYO5BQ9ULV0 1848 aa20.41■□□□□ 0.86
VPS29-211ENST00000553128 AHDC1Q5TGY3 1603 aaPredicted RBP20.4■□□□□ 0.86
VPS29-211ENST00000553128 SHPRHQ149N8 1683 aa20.39■□□□□ 0.86
VPS29-211ENST00000553128 ANKRD30AQ9BXX3 1397 aa20.39■□□□□ 0.85
VPS29-211ENST00000553128 PPP1R15AO75807 674 aaPredicted RBP20.39■□□□□ 0.85
VPS29-211ENST00000553128 RXRBP28702 533 aa20.39■□□□□ 0.85
VPS29-211ENST00000553128 C14orf37Q86TY3 774 aa20.39■□□□□ 0.85
VPS29-211ENST00000553128 LOC105371045A0A1W2PR82 267 aa20.38■□□□□ 0.85
VPS29-211ENST00000553128 NUTM2DQ5VT03 806 aaPredicted RBP20.38■□□□□ 0.85
VPS29-211ENST00000553128 TBX22Q9Y458 520 aa20.38■□□□□ 0.85
VPS29-211ENST00000553128 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.38■□□□□ 0.85
VPS29-211ENST00000553128 NCOA3Q9Y6Q9 1424 aa20.37■□□□□ 0.85
VPS29-211ENST00000553128 NUTM2BA6NNL0 878 aaPredicted RBP20.37■□□□□ 0.85
VPS29-211ENST00000553128 NUTM2EB1AL46 878 aaPredicted RBP20.37■□□□□ 0.85
VPS29-211ENST00000553128 NUTM2AQ8IVF1 878 aaPredicted RBP20.37■□□□□ 0.85
VPS29-211ENST00000553128 GCC2Q8IWJ2 1684 aa20.37■□□□□ 0.85
VPS29-211ENST00000553128 ADAMTS13Q76LX8 1427 aa20.36■□□□□ 0.85
VPS29-211ENST00000553128 TMEM131LA2VDJ0 1609 aa20.36■□□□□ 0.85
VPS29-211ENST00000553128 DIP2AQ14689 1571 aa20.36■□□□□ 0.85
VPS29-211ENST00000553128 CADPS2Q86UW7 1296 aa20.35■□□□□ 0.85
VPS29-211ENST00000553128 C19orf44Q9H6X5 657 aa20.35■□□□□ 0.85
VPS29-211ENST00000553128 ATF3P18847 181 aa20.34■□□□□ 0.85
VPS29-211ENST00000553128 BRINP3Q76B58 766 aa20.34■□□□□ 0.85
VPS29-211ENST00000553128 AFF2P51816 1311 aa20.32■□□□□ 0.84
VPS29-211ENST00000553128 RPRD2Q5VT52 1461 aaKnown RBP20.32■□□□□ 0.84
VPS29-211ENST00000553128 CDK12Q9NYV4 1490 aaPredicted RBP20.32■□□□□ 0.84
VPS29-211ENST00000553128 PTPRUQ92729 1446 aa20.3■□□□□ 0.84
VPS29-211ENST00000553128 CHGAP10645 457 aaKnown RBP20.3■□□□□ 0.84
VPS29-211ENST00000553128 HDGFP51858 240 aaKnown RBP20.3■□□□□ 0.84
VPS29-211ENST00000553128 ADGRL2O95490 1459 aa20.29■□□□□ 0.84
VPS29-211ENST00000553128 RGS12O14924 1447 aa20.28■□□□□ 0.84
VPS29-211ENST00000553128 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.27■□□□□ 0.84
VPS29-211ENST00000553128 AMOTL2Q9Y2J4 779 aa20.27■□□□□ 0.84
VPS29-211ENST00000553128 ASXL1Q8IXJ9 1541 aa20.27■□□□□ 0.83
VPS29-211ENST00000553128 ANKRD50Q9ULJ7 1429 aa20.27■□□□□ 0.83
VPS29-211ENST00000553128 PIK3R4Q99570 1358 aa20.25■□□□□ 0.83
VPS29-211ENST00000553128 DDX17Q92841 729 aaKnown RBP20.25■□□□□ 0.83
VPS29-211ENST00000553128 SETD5Q9C0A6 1442 aa20.25■□□□□ 0.83
VPS29-211ENST00000553128 C8orf37Q96NL8 207 aa20.24■□□□□ 0.83
VPS29-211ENST00000553128 QTRT2Q9H974 415 aaKnown RBP20.24■□□□□ 0.83
VPS29-211ENST00000553128 MST1RQ04912 1400 aa20.22■□□□□ 0.83
VPS29-211ENST00000553128 TRPM2O94759 1503 aa20.22■□□□□ 0.83
VPS29-211ENST00000553128 NHSL1Q5SYE7 1610 aa20.2■□□□□ 0.82
VPS29-211ENST00000553128 DCCP43146 1447 aa20.2■□□□□ 0.82
VPS29-211ENST00000553128 RBM6P78332 1123 aaKnown RBP20.2■□□□□ 0.82
VPS29-211ENST00000553128 UNC13BO14795 1591 aa20.2■□□□□ 0.82
VPS29-211ENST00000553128 E9PCH4 1651 aa20.19■□□□□ 0.82
VPS29-211ENST00000553128 PNPLA6Q8IY17 1366 aa20.19■□□□□ 0.82
VPS29-211ENST00000553128 APLP2Q06481 763 aa20.18■□□□□ 0.82
VPS29-211ENST00000553128 FAM50AQ14320 339 aaKnown RBP20.18■□□□□ 0.82
VPS29-211ENST00000553128 LRRC59Q96AG4 307 aaKnown RBP20.18■□□□□ 0.82
VPS29-211ENST00000553128 NRXN3Q9Y4C0 1643 aa20.17■□□□□ 0.82
VPS29-211ENST00000553128 XRN1Q8IZH2 1706 aaKnown RBP20.17■□□□□ 0.82
VPS29-211ENST00000553128 METP08581 1390 aa20.14■□□□□ 0.81
VPS29-211ENST00000553128 ADAMTS2O95450 1211 aa20.14■□□□□ 0.81
VPS29-211ENST00000553128 EP400Q96L91 3159 aa20.14■□□□□ 0.81
VPS29-211ENST00000553128 NGLY1Q96IV0 654 aa20.12■□□□□ 0.81
VPS29-211ENST00000553128 SETBP1Q9Y6X0 1596 aa20.1■□□□□ 0.81
VPS29-211ENST00000553128 ADGRL3Q9HAR2 1447 aa20.1■□□□□ 0.81
VPS29-211ENST00000553128 ATAD2Q6PL18 1390 aa20.09■□□□□ 0.81
VPS29-211ENST00000553128 IQGAP3Q86VI3 1631 aa20.09■□□□□ 0.81
VPS29-211ENST00000553128 NALCNQ8IZF0 1738 aa20.08■□□□□ 0.81
VPS29-211ENST00000553128 C1orf167Q5SNV9 1468 aa20.06■□□□□ 0.8
VPS29-211ENST00000553128 USP21Q9UK80 565 aa20.06■□□□□ 0.8
VPS29-211ENST00000553128 NUP155O75694 1391 aa20.05■□□□□ 0.8
VPS29-211ENST00000553128 ORAI2Q96SN7 254 aa20.04■□□□□ 0.8
VPS29-211ENST00000553128 ZRANB1Q9UGI0 708 aa20.04■□□□□ 0.8
VPS29-211ENST00000553128 ZNF326Q5BKZ1 582 aaKnown RBP20.02■□□□□ 0.8
VPS29-211ENST00000553128 FNBP4Q8N3X1 1017 aaPredicted RBP20.02■□□□□ 0.8
VPS29-211ENST00000553128 TRPC5Q9UL62 973 aaPredicted RBP20.02■□□□□ 0.8
VPS29-211ENST00000553128 ATRNO75882 1429 aa20.02■□□□□ 0.79
VPS29-211ENST00000553128 SOS2Q07890 1332 aaPredicted RBP20.02■□□□□ 0.79
VPS29-211ENST00000553128 LAMC1P11047 1609 aa20.01■□□□□ 0.79
VPS29-211ENST00000553128 ROCK1Q13464 1354 aa19.98■□□□□ 0.79
VPS29-211ENST00000553128 PTCH1Q13635 1447 aa19.98■□□□□ 0.79
VPS29-211ENST00000553128 NEXMIFQ5QGS0 1516 aa19.97■□□□□ 0.79
VPS29-211ENST00000553128 ROBO2Q9HCK4 1378 aa19.96■□□□□ 0.79
VPS29-211ENST00000553128 BCL9LQ86UU0 1499 aa19.96■□□□□ 0.79
VPS29-211ENST00000553128 SPHKAPQ2M3C7 1700 aa19.96■□□□□ 0.79
VPS29-211ENST00000553128 MYOM2P54296 1465 aa19.94■□□□□ 0.78
VPS29-211ENST00000553128 COL22A1Q8NFW1 1626 aaPredicted RBP19.94■□□□□ 0.78
VPS29-211ENST00000553128 CLTCL1P53675 1640 aa19.92■□□□□ 0.78
VPS29-211ENST00000553128 ITGAEP38570 1179 aa19.91■□□□□ 0.78
VPS29-211ENST00000553128 FOXD1Q16676 465 aa19.91■□□□□ 0.78
VPS29-211ENST00000553128 CCDC125Q86Z20 511 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms