RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 NKTRP30414 1462 aaKnown RBP26.68■■□□□ 1.86
CHMP1A-205ENST00000548650 RIMS2Q9UQ26 1411 aa26.67■■□□□ 1.86
CHMP1A-205ENST00000548650 ITGAEP38570 1179 aa26.67■■□□□ 1.86
CHMP1A-205ENST00000548650 RRBP1Q9P2E9 1410 aaKnown RBP26.66■■□□□ 1.86
CHMP1A-205ENST00000548650 SLC26A8Q96RN1 970 aa26.66■■□□□ 1.86
CHMP1A-205ENST00000548650 PLEKHG1Q9ULL1 1385 aa26.66■■□□□ 1.86
CHMP1A-205ENST00000548650 NUP155O75694 1391 aa26.65■■□□□ 1.86
CHMP1A-205ENST00000548650 SPHKAPQ2M3C7 1700 aa26.65■■□□□ 1.86
CHMP1A-205ENST00000548650 TMEM94Q12767 1356 aa26.64■■□□□ 1.86
CHMP1A-205ENST00000548650 CHD2O14647 1828 aaKnown RBP26.64■■□□□ 1.85
CHMP1A-205ENST00000548650 KCNA6P17658 529 aa26.63■■□□□ 1.85
CHMP1A-205ENST00000548650 DIP2AQ14689 1571 aa26.59■■□□□ 1.85
CHMP1A-205ENST00000548650 SOCS7O14512 581 aa26.58■■□□□ 1.85
CHMP1A-205ENST00000548650 PPP1R15AO75807 674 aaPredicted RBP26.56■■□□□ 1.84
CHMP1A-205ENST00000548650 ROBO1Q9Y6N7 1651 aa26.55■■□□□ 1.84
CHMP1A-205ENST00000548650 ADAMTS13Q76LX8 1427 aa26.55■■□□□ 1.84
CHMP1A-205ENST00000548650 CHGAP10645 457 aaKnown RBP26.53■■□□□ 1.84
CHMP1A-205ENST00000548650 BCANQ96GW7 911 aa26.53■■□□□ 1.84
CHMP1A-205ENST00000548650 SENP3Q9H4L4 574 aaPredicted RBP26.53■■□□□ 1.84
CHMP1A-205ENST00000548650 NAIPQ13075 1403 aa26.53■■□□□ 1.84
CHMP1A-205ENST00000548650 FAM135BQ49AJ0 1406 aa26.52■■□□□ 1.84
CHMP1A-205ENST00000548650 PROSER2Q86WR7 435 aaPredicted RBP26.52■■□□□ 1.84
CHMP1A-205ENST00000548650 NRXN3Q9Y4C0 1643 aa26.51■■□□□ 1.83
CHMP1A-205ENST00000548650 HDGFP51858 240 aaKnown RBP26.51■■□□□ 1.83
CHMP1A-205ENST00000548650 CLTCL1P53675 1640 aa26.5■■□□□ 1.83
CHMP1A-205ENST00000548650 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.5■■□□□ 1.83
CHMP1A-205ENST00000548650 RBM33Q96EV2 1170 aaKnown RBP26.5■■□□□ 1.83
CHMP1A-205ENST00000548650 TRPM2O94759 1503 aa26.49■■□□□ 1.83
CHMP1A-205ENST00000548650 TBX22Q9Y458 520 aa26.47■■□□□ 1.83
CHMP1A-205ENST00000548650 MSH6P52701 1360 aa26.46■■□□□ 1.83
CHMP1A-205ENST00000548650 SETBP1Q9Y6X0 1596 aa26.46■■□□□ 1.83
CHMP1A-205ENST00000548650 NUTM2DQ5VT03 806 aaPredicted RBP26.46■■□□□ 1.83
CHMP1A-205ENST00000548650 HFM1A2PYH4 1435 aa26.45■■□□□ 1.82
CHMP1A-205ENST00000548650 PIK3R4Q99570 1358 aa26.45■■□□□ 1.82
CHMP1A-205ENST00000548650 XRN1Q8IZH2 1706 aaKnown RBP26.43■■□□□ 1.82
CHMP1A-205ENST00000548650 NEXMIFQ5QGS0 1516 aa26.42■■□□□ 1.82
CHMP1A-205ENST00000548650 KIF1BO60333 1816 aa26.42■■□□□ 1.82
CHMP1A-205ENST00000548650 NCOA3Q9Y6Q9 1424 aa26.41■■□□□ 1.82
CHMP1A-205ENST00000548650 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.39■■□□□ 1.82
CHMP1A-205ENST00000548650 PTPRUQ92729 1446 aa26.39■■□□□ 1.81
CHMP1A-205ENST00000548650 PHLPP1O60346 1717 aa26.38■■□□□ 1.81
CHMP1A-205ENST00000548650 PHF23Q9BUL5 403 aaPredicted RBP26.36■■□□□ 1.81
CHMP1A-205ENST00000548650 COL16A1Q07092 1604 aaPredicted RBP26.34■■□□□ 1.81
CHMP1A-205ENST00000548650 SLAIN2Q9P270 581 aa26.32■■□□□ 1.8
CHMP1A-205ENST00000548650 SETD1AO15047 1707 aaKnown RBP26.31■■□□□ 1.8
CHMP1A-205ENST00000548650 ZNF326Q5BKZ1 582 aaKnown RBP26.29■■□□□ 1.8
CHMP1A-205ENST00000548650 AMOTL2Q9Y2J4 779 aa26.28■■□□□ 1.8
CHMP1A-205ENST00000548650 AHDC1Q5TGY3 1603 aaPredicted RBP26.28■■□□□ 1.8
CHMP1A-205ENST00000548650 METP08581 1390 aa26.27■■□□□ 1.8
CHMP1A-205ENST00000548650 PPLO60437 1756 aa26.26■■□□□ 1.79
CHMP1A-205ENST00000548650 DCCP43146 1447 aa26.26■■□□□ 1.79
CHMP1A-205ENST00000548650 C14orf37Q86TY3 774 aa26.26■■□□□ 1.79
CHMP1A-205ENST00000548650 NALCNQ8IZF0 1738 aa26.25■■□□□ 1.79
CHMP1A-205ENST00000548650 TRIM52Q96A61 297 aa26.24■■□□□ 1.79
CHMP1A-205ENST00000548650 C19orf44Q9H6X5 657 aa26.24■■□□□ 1.79
CHMP1A-205ENST00000548650 CADPS2Q86UW7 1296 aa26.23■■□□□ 1.79
CHMP1A-205ENST00000548650 RGS17Q9UGC6 210 aaPredicted RBP26.23■■□□□ 1.79
CHMP1A-205ENST00000548650 JCADQ9P266 1359 aa26.2■■□□□ 1.79
CHMP1A-205ENST00000548650 SHPRHQ149N8 1683 aa26.2■■□□□ 1.78
CHMP1A-205ENST00000548650 SLC4A1APQ9BWU0 796 aaKnown RBP26.2■■□□□ 1.78
CHMP1A-205ENST00000548650 ATF3P18847 181 aa26.19■■□□□ 1.78
CHMP1A-205ENST00000548650 ADGRL3Q9HAR2 1447 aa26.18■■□□□ 1.78
CHMP1A-205ENST00000548650 ASXL1Q8IXJ9 1541 aa26.18■■□□□ 1.78
CHMP1A-205ENST00000548650 MST1RQ04912 1400 aa26.17■■□□□ 1.78
CHMP1A-205ENST00000548650 NHSL1Q5SYE7 1610 aa26.17■■□□□ 1.78
CHMP1A-205ENST00000548650 PTCH1Q13635 1447 aa26.15■■□□□ 1.78
CHMP1A-205ENST00000548650 PRAG1Q86YV5 1406 aa26.15■■□□□ 1.78
CHMP1A-205ENST00000548650 IFT172Q9UG01 1749 aa26.15■■□□□ 1.78
CHMP1A-205ENST00000548650 LRP6O75581 1613 aa26.14■■□□□ 1.77
CHMP1A-205ENST00000548650 BRINP3Q76B58 766 aa26.12■■□□□ 1.77
CHMP1A-205ENST00000548650 RPGRIP1LQ68CZ1 1315 aa26.11■■□□□ 1.77
CHMP1A-205ENST00000548650 FOXD1Q16676 465 aa26.1■■□□□ 1.77
CHMP1A-205ENST00000548650 CCDC144AA2RUR9 1427 aa26.09■■□□□ 1.77
CHMP1A-205ENST00000548650 VGFO15240 615 aaPredicted RBP26.09■■□□□ 1.77
CHMP1A-205ENST00000548650 SPATA31E1Q6ZUB1 1445 aa26.08■■□□□ 1.77
CHMP1A-205ENST00000548650 ROBO2Q9HCK4 1378 aa26.07■■□□□ 1.76
CHMP1A-205ENST00000548650 POTEAQ6S8J7 498 aa26.06■■□□□ 1.76
CHMP1A-205ENST00000548650 SPATA31A6Q5VVP1 1343 aa26.06■■□□□ 1.76
CHMP1A-205ENST00000548650 LAMC1P11047 1609 aa26.04■■□□□ 1.76
CHMP1A-205ENST00000548650 SETD5Q9C0A6 1442 aa26.03■■□□□ 1.76
CHMP1A-205ENST00000548650 MPHOSPH9Q99550 1183 aa26.02■■□□□ 1.76
CHMP1A-205ENST00000548650 C1orf167Q5SNV9 1468 aa26■■□□□ 1.75
CHMP1A-205ENST00000548650 KNDC1Q76NI1 1749 aa26■■□□□ 1.75
CHMP1A-205ENST00000548650 CDC42BPGQ6DT37 1551 aa25.99■■□□□ 1.75
CHMP1A-205ENST00000548650 ADGRF5Q8IZF2 1346 aa25.97■■□□□ 1.75
CHMP1A-205ENST00000548650 ANKRD30BQ9BXX2 1392 aa25.96■■□□□ 1.75
CHMP1A-205ENST00000548650 TECPR2O15040 1411 aa25.96■■□□□ 1.75
CHMP1A-205ENST00000548650 PIK3C2GO75747 1445 aa25.96■■□□□ 1.75
CHMP1A-205ENST00000548650 DDX17Q92841 729 aaKnown RBP25.92■■□□□ 1.74
CHMP1A-205ENST00000548650 RGL3Q3MIN7 710 aa25.91■■□□□ 1.74
CHMP1A-205ENST00000548650 MEX3CQ5U5Q3 659 aaKnown RBP25.91■■□□□ 1.74
CHMP1A-205ENST00000548650 PNPLA6Q8IY17 1366 aa25.91■■□□□ 1.74
CHMP1A-205ENST00000548650 ACIN1Q9UKV3 1341 aaKnown RBP25.9■■□□□ 1.74
CHMP1A-205ENST00000548650 RAB3GAP2Q9H2M9 1393 aa25.9■■□□□ 1.74
CHMP1A-205ENST00000548650 NRXN1Q9ULB1 1477 aa25.89■■□□□ 1.73
CHMP1A-205ENST00000548650 MYOM2P54296 1465 aa25.88■■□□□ 1.73
CHMP1A-205ENST00000548650 LRPPRCP42704 1394 aaKnown RBP25.88■■□□□ 1.73
CHMP1A-205ENST00000548650 LRRC59Q96AG4 307 aaKnown RBP25.87■■□□□ 1.73
CHMP1A-205ENST00000548650 NUTM2BA6NNL0 878 aaPredicted RBP25.85■■□□□ 1.73
CHMP1A-205ENST00000548650 NUTM2EB1AL46 878 aaPredicted RBP25.85■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms