RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-218	ENST00000546298	RIMS2	Q9UQ26	1411 aa		14.13	□□□□□ -0.15
YBX3-218	ENST00000546298	TET3	O43151	1660 aa		14.13	□□□□□ -0.15
YBX3-218	ENST00000546298	KDM5A	P29375	1690 aa	Known RBP	14.13	□□□□□ -0.15
YBX3-218	ENST00000546298	UNC13B	O14795	1591 aa		14.13	□□□□□ -0.15
YBX3-218	ENST00000546298	PLEKHG1	Q9ULL1	1385 aa		14.12	□□□□□ -0.15
YBX3-218	ENST00000546298	TBX22	Q9Y458	520 aa		14.12	□□□□□ -0.15
YBX3-218	ENST00000546298	TMEM94	Q12767	1356 aa		14.1	□□□□□ -0.15
YBX3-218	ENST00000546298	ZFYVE9	O95405	1425 aa		14.1	□□□□□ -0.15
YBX3-218	ENST00000546298	TRIM52	Q96A61	297 aa		14.09	□□□□□ -0.15
YBX3-218	ENST00000546298	IQGAP3	Q86VI3	1631 aa		14.08	□□□□□ -0.16
YBX3-218	ENST00000546298	NAIP	Q13075	1403 aa		14.07	□□□□□ -0.16
YBX3-218	ENST00000546298	NUTM2D	Q5VT03	806 aa	Predicted RBP	14.07	□□□□□ -0.16
YBX3-218	ENST00000546298	ZNF326	Q5BKZ1	582 aa	Known RBP	14.06	□□□□□ -0.16
YBX3-218	ENST00000546298	GCC2	Q8IWJ2	1684 aa		14.06	□□□□□ -0.16
YBX3-218	ENST00000546298	ILDR2	Q71H61	639 aa		14.05	□□□□□ -0.16
YBX3-218	ENST00000546298	MSH6	P52701	1360 aa		14.05	□□□□□ -0.16
YBX3-218	ENST00000546298	HFM1	A2PYH4	1435 aa		14.05	□□□□□ -0.16
YBX3-218	ENST00000546298	NKTR	P30414	1462 aa	Known RBP	14.05	□□□□□ -0.16
YBX3-218	ENST00000546298	RBM33	Q96EV2	1170 aa	Known RBP	14.04	□□□□□ -0.16
YBX3-218	ENST00000546298	SLC4A1AP	Q9BWU0	796 aa	Known RBP	14.04	□□□□□ -0.16
YBX3-218	ENST00000546298	PIK3R4	Q99570	1358 aa		14.04	□□□□□ -0.16
YBX3-218	ENST00000546298	FAM135B	Q49AJ0	1406 aa		14.04	□□□□□ -0.16
YBX3-218	ENST00000546298	TMEM131L	A2VDJ0	1609 aa		14.04	□□□□□ -0.16
YBX3-218	ENST00000546298	C14orf37	Q86TY3	774 aa		14.03	□□□□□ -0.16
YBX3-218	ENST00000546298		E9PCH4	1651 aa		14.03	□□□□□ -0.16
YBX3-218	ENST00000546298	STRCP1	A6NGW2	1772 aa		14.02	□□□□□ -0.16
YBX3-218	ENST00000546298	NCOA3	Q9Y6Q9	1424 aa		14.02	□□□□□ -0.16
YBX3-218	ENST00000546298	ALK	Q9UM73	1620 aa		14.01	□□□□□ -0.17
YBX3-218	ENST00000546298	ADAMTS13	Q76LX8	1427 aa		14.01	□□□□□ -0.17
YBX3-218	ENST00000546298	SOCS7	O14512	581 aa		14.01	□□□□□ -0.17
YBX3-218	ENST00000546298	SLAIN2	Q9P270	581 aa		14.01	□□□□□ -0.17
YBX3-218	ENST00000546298	ACIN1	Q9UKV3	1341 aa	Known RBP	14	□□□□□ -0.17
YBX3-218	ENST00000546298	AMOTL2	Q9Y2J4	779 aa		14	□□□□□ -0.17
YBX3-218	ENST00000546298	C19orf44	Q9H6X5	657 aa		13.99	□□□□□ -0.17
YBX3-218	ENST00000546298	RPGRIP1L	Q68CZ1	1315 aa		13.98	□□□□□ -0.17
YBX3-218	ENST00000546298	NWD1	Q149M9	1564 aa		13.98	□□□□□ -0.17
YBX3-218	ENST00000546298	VGF	O15240	615 aa	Predicted RBP	13.98	□□□□□ -0.17
YBX3-218	ENST00000546298	CADPS2	Q86UW7	1296 aa		13.98	□□□□□ -0.17
YBX3-218	ENST00000546298	ATF3	P18847	181 aa		13.97	□□□□□ -0.17
YBX3-218	ENST00000546298	DIP2A	Q14689	1571 aa		13.96	□□□□□ -0.18
YBX3-218	ENST00000546298	TRPM2	O94759	1503 aa		13.95	□□□□□ -0.18
YBX3-218	ENST00000546298	MPHOSPH9	Q99550	1183 aa		13.93	□□□□□ -0.18
YBX3-218	ENST00000546298	MED1	Q15648	1581 aa	Predicted RBP	13.92	□□□□□ -0.18
YBX3-218	ENST00000546298	PTPRU	Q92729	1446 aa		13.91	□□□□□ -0.18
YBX3-218	ENST00000546298	MET	P08581	1390 aa		13.91	□□□□□ -0.18
YBX3-218	ENST00000546298	SPHKAP	Q2M3C7	1700 aa		13.9	□□□□□ -0.18
YBX3-218	ENST00000546298	SETBP1	Q9Y6X0	1596 aa		13.9	□□□□□ -0.18
YBX3-218	ENST00000546298	MYO5B	Q9ULV0	1848 aa		13.89	□□□□□ -0.19
YBX3-218	ENST00000546298	CCDC144A	A2RUR9	1427 aa		13.89	□□□□□ -0.19
YBX3-218	ENST00000546298	CHD2	O14647	1828 aa	Known RBP	13.88	□□□□□ -0.19
YBX3-218	ENST00000546298	XIRP1	Q702N8	1843 aa	Known RBP	13.88	□□□□□ -0.19
YBX3-218	ENST00000546298	JCAD	Q9P266	1359 aa		13.88	□□□□□ -0.19
YBX3-218	ENST00000546298	SETD5	Q9C0A6	1442 aa		13.88	□□□□□ -0.19
YBX3-218	ENST00000546298	CLTCL1	P53675	1640 aa		13.87	□□□□□ -0.19
YBX3-218	ENST00000546298	NEXMIF	Q5QGS0	1516 aa		13.87	□□□□□ -0.19
YBX3-218	ENST00000546298	DCC	P43146	1447 aa		13.87	□□□□□ -0.19
YBX3-218	ENST00000546298	RGL3	Q3MIN7	710 aa		13.86	□□□□□ -0.19
YBX3-218	ENST00000546298	BRINP3	Q76B58	766 aa		13.85	□□□□□ -0.19
YBX3-218	ENST00000546298	ROBO1	Q9Y6N7	1651 aa		13.85	□□□□□ -0.19
YBX3-218	ENST00000546298	ANKRD30B	Q9BXX2	1392 aa		13.84	□□□□□ -0.19
YBX3-218	ENST00000546298	SPATA31A6	Q5VVP1	1343 aa		13.83	□□□□□ -0.2
YBX3-218	ENST00000546298	NRXN3	Q9Y4C0	1643 aa		13.82	□□□□□ -0.2
YBX3-218	ENST00000546298	ADGRL3	Q9HAR2	1447 aa		13.82	□□□□□ -0.2
YBX3-218	ENST00000546298	RGS17	Q9UGC6	210 aa	Predicted RBP	13.82	□□□□□ -0.2
YBX3-218	ENST00000546298	ADGRF5	Q8IZF2	1346 aa		13.82	□□□□□ -0.2
YBX3-218	ENST00000546298	PTCH1	Q13635	1447 aa		13.81	□□□□□ -0.2
YBX3-218	ENST00000546298	SPATA31E1	Q6ZUB1	1445 aa		13.81	□□□□□ -0.2
YBX3-218	ENST00000546298	HRC	P23327	699 aa		13.8	□□□□□ -0.2
YBX3-218	ENST00000546298	MEX3C	Q5U5Q3	659 aa	Known RBP	13.8	□□□□□ -0.2
YBX3-218	ENST00000546298	LRRC59	Q96AG4	307 aa	Known RBP	13.8	□□□□□ -0.2
YBX3-218	ENST00000546298	RAB3GAP2	Q9H2M9	1393 aa		13.8	□□□□□ -0.2
YBX3-218	ENST00000546298	ROBO2	Q9HCK4	1378 aa		13.8	□□□□□ -0.2
YBX3-218	ENST00000546298	MST1R	Q04912	1400 aa		13.8	□□□□□ -0.2
YBX3-218	ENST00000546298	XRN1	Q8IZH2	1706 aa	Known RBP	13.79	□□□□□ -0.2
YBX3-218	ENST00000546298	KIF1B	O60333	1816 aa		13.79	□□□□□ -0.2
YBX3-218	ENST00000546298	PRAG1	Q86YV5	1406 aa		13.79	□□□□□ -0.2
YBX3-218	ENST00000546298	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.78	□□□□□ -0.2
YBX3-218	ENST00000546298	STK26	Q9P289	416 aa		13.77	□□□□□ -0.21
YBX3-218	ENST00000546298	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.76	□□□□□ -0.21
YBX3-218	ENST00000546298	LRPPRC	P42704	1394 aa	Known RBP	13.76	□□□□□ -0.21
YBX3-218	ENST00000546298	MSH5	O43196	834 aa		13.76	□□□□□ -0.21
YBX3-218	ENST00000546298	POTEA	Q6S8J7	498 aa		13.76	□□□□□ -0.21
YBX3-218	ENST00000546298	C1orf167	Q5SNV9	1468 aa		13.75	□□□□□ -0.21
YBX3-218	ENST00000546298	ABCC11	Q96J66	1382 aa		13.75	□□□□□ -0.21
YBX3-218	ENST00000546298	ZNF772	Q68DY9	489 aa	Predicted RBP	13.75	□□□□□ -0.21
YBX3-218	ENST00000546298	C14orf93	Q9H972	538 aa	Known RBP	13.75	□□□□□ -0.21
YBX3-218	ENST00000546298	PHLPP1	O60346	1717 aa		13.75	□□□□□ -0.21
YBX3-218	ENST00000546298	ASXL1	Q8IXJ9	1541 aa		13.74	□□□□□ -0.21
YBX3-218	ENST00000546298	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.74	□□□□□ -0.21
YBX3-218	ENST00000546298	NUTM2E	B1AL46	878 aa	Predicted RBP	13.74	□□□□□ -0.21
YBX3-218	ENST00000546298	TMEM132E	Q6IEE7	984 aa		13.74	□□□□□ -0.21
YBX3-218	ENST00000546298	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.74	□□□□□ -0.21
YBX3-218	ENST00000546298	SIRT1	Q96EB6	747 aa		13.74	□□□□□ -0.21
YBX3-218	ENST00000546298	COL16A1	Q07092	1604 aa	Predicted RBP	13.74	□□□□□ -0.21
YBX3-218	ENST00000546298	WAPL	Q7Z5K2	1190 aa		13.73	□□□□□ -0.21
YBX3-218	ENST00000546298	STAC3	Q96MF2	364 aa		13.73	□□□□□ -0.21
YBX3-218	ENST00000546298	ORAI2	Q96SN7	254 aa		13.73	□□□□□ -0.21
YBX3-218	ENST00000546298	TECPR2	O15040	1411 aa		13.73	□□□□□ -0.21
YBX3-218	ENST00000546298	DHX57	Q6P158	1386 aa	Known RBP	13.72	□□□□□ -0.21
YBX3-218	ENST00000546298	ESCO1	Q5FWF5	840 aa		13.72	□□□□□ -0.21

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