RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 TSPOAP1O95153 1857 aa11.09□□□□□ -0.63
CLIP1-218ENST00000545889 FANCIQ9NVI1 1328 aa11.09□□□□□ -0.63
CLIP1-218ENST00000545889 DNAJC5Q9H3Z4 198 aa11.09□□□□□ -0.63
CLIP1-218ENST00000545889 ERBINQ96RT1 1412 aa11.09□□□□□ -0.63
CLIP1-218ENST00000545889 FTSJ3Q8IY81 847 aaKnown RBP11.09□□□□□ -0.63
CLIP1-218ENST00000545889 SLC26A8Q96RN1 970 aa11.09□□□□□ -0.63
CLIP1-218ENST00000545889 DUOX2Q9NRD8 1548 aa11.08□□□□□ -0.64
CLIP1-218ENST00000545889 MAPKBP1O60336 1514 aa11.08□□□□□ -0.64
CLIP1-218ENST00000545889 EIF3AQ14152 1382 aaKnown RBP11.08□□□□□ -0.64
CLIP1-218ENST00000545889 POGZQ7Z3K3 1410 aa11.07□□□□□ -0.64
CLIP1-218ENST00000545889 SAMD9LQ8IVG5 1584 aa11.07□□□□□ -0.64
CLIP1-218ENST00000545889 MYO5CQ9NQX4 1742 aa11.07□□□□□ -0.64
CLIP1-218ENST00000545889 TAOK2Q9UL54 1235 aa11.07□□□□□ -0.64
CLIP1-218ENST00000545889 LRRIQ1Q96JM4 1722 aa11.07□□□□□ -0.64
CLIP1-218ENST00000545889 SHROOM2Q13796 1616 aa11.07□□□□□ -0.64
CLIP1-218ENST00000545889 GTF2E1P29083 439 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-218ENST00000545889 YEATS2Q9ULM3 1422 aa11.06□□□□□ -0.64
CLIP1-218ENST00000545889 G3V3G9 751 aa11.06□□□□□ -0.64
CLIP1-218ENST00000545889 DCAF8Q5TAQ9 597 aa11.06□□□□□ -0.64
CLIP1-218ENST00000545889 PANK3Q9H999 370 aa11.06□□□□□ -0.64
CLIP1-218ENST00000545889 SHANK2Q9UPX8 1470 aa11.06□□□□□ -0.64
CLIP1-218ENST00000545889 ARHGEF12Q9NZN5 1544 aa11.06□□□□□ -0.64
CLIP1-218ENST00000545889 ADGRF5Q8IZF2 1346 aa11.05□□□□□ -0.64
CLIP1-218ENST00000545889 RIMBP3CA6NJZ7 1639 aa11.05□□□□□ -0.64
CLIP1-218ENST00000545889 RIMBP3BA6NNM3 1639 aa11.05□□□□□ -0.64
CLIP1-218ENST00000545889 RIMBP3Q9UFD9 1639 aa11.05□□□□□ -0.64
CLIP1-218ENST00000545889 KIF7Q2M1P5 1343 aa11.05□□□□□ -0.64
CLIP1-218ENST00000545889 ATP7AQ04656 1500 aa11.05□□□□□ -0.64
CLIP1-218ENST00000545889 FGD1P98174 961 aa11.05□□□□□ -0.64
CLIP1-218ENST00000545889 MORC1Q86VD1 984 aa11.05□□□□□ -0.64
CLIP1-218ENST00000545889 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.05□□□□□ -0.64
CLIP1-218ENST00000545889 CENPJQ9HC77 1338 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-218ENST00000545889 RTEL1-TNFRSF6BF6WH68 1400 aa11.04□□□□□ -0.64
CLIP1-218ENST00000545889 WASHC2AQ641Q2 1341 aa11.04□□□□□ -0.64
CLIP1-218ENST00000545889 FAM135AQ9P2D6 1515 aa11.04□□□□□ -0.64
CLIP1-218ENST00000545889 CFAP65Q6ZU64 1925 aaKnown RBP11.04□□□□□ -0.64
CLIP1-218ENST00000545889 EVA1CP58658 441 aa11.04□□□□□ -0.64
CLIP1-218ENST00000545889 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.03□□□□□ -0.64
CLIP1-218ENST00000545889 RPRD2Q5VT52 1461 aaKnown RBP11.03□□□□□ -0.64
CLIP1-218ENST00000545889 THEMISQ8N1K5 641 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-218ENST00000545889 ADGRL2O95490 1459 aa11.03□□□□□ -0.64
CLIP1-218ENST00000545889 PZPP20742 1482 aa11.03□□□□□ -0.64
CLIP1-218ENST00000545889 KDM6BO15054 1643 aa11.03□□□□□ -0.64
CLIP1-218ENST00000545889 CDC42BPAQ5VT25 1732 aa11.03□□□□□ -0.64
CLIP1-218ENST00000545889 NEO1Q92859 1461 aa11.02□□□□□ -0.64
CLIP1-218ENST00000545889 NAP1L5Q96NT1 182 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-218ENST00000545889 CABP2Q9NPB3 220 aa11.02□□□□□ -0.65
CLIP1-218ENST00000545889 STAC3Q96MF2 364 aa11.02□□□□□ -0.65
CLIP1-218ENST00000545889 KCNJ4P48050 445 aa11.02□□□□□ -0.65
CLIP1-218ENST00000545889 PRAM1Q96QH2 718 aa11.02□□□□□ -0.65
CLIP1-218ENST00000545889 PREX2Q70Z35 1606 aa11.01□□□□□ -0.65
CLIP1-218ENST00000545889 B4GALNT3Q6L9W6 998 aa11.01□□□□□ -0.65
CLIP1-218ENST00000545889 CASC1Q6TDU7 716 aa11.01□□□□□ -0.65
CLIP1-218ENST00000545889 CHMP4BQ9H444 224 aaKnown RBP11.01□□□□□ -0.65
CLIP1-218ENST00000545889 CCDC7Q96M83 1385 aa11□□□□□ -0.65
CLIP1-218ENST00000545889 EVC2Q86UK5 1308 aa11□□□□□ -0.65
CLIP1-218ENST00000545889 ZRSR1Q15695 479 aaKnown RBP11□□□□□ -0.65
CLIP1-218ENST00000545889 KLHL34Q8N239 644 aa11□□□□□ -0.65
CLIP1-218ENST00000545889 FRAT1Q92837 279 aaPredicted RBP11□□□□□ -0.65
CLIP1-218ENST00000545889 ABCC1P33527 1531 aa11□□□□□ -0.65
CLIP1-218ENST00000545889 KTN1Q86UP2 1357 aaKnown RBP11□□□□□ -0.65
CLIP1-218ENST00000545889 LTV1Q96GA3 475 aaPredicted RBP11□□□□□ -0.65
CLIP1-218ENST00000545889 C11orf95C9JLR9 678 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-218ENST00000545889 AMPHP49418 695 aa10.99□□□□□ -0.65
CLIP1-218ENST00000545889 RBM33Q96EV2 1170 aaKnown RBP10.99□□□□□ -0.65
CLIP1-218ENST00000545889 NAP1L2Q9ULW6 460 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-218ENST00000545889 NOS1P29475 1434 aa10.99□□□□□ -0.65
CLIP1-218ENST00000545889 ZMYND15Q9H091 742 aa10.98□□□□□ -0.65
CLIP1-218ENST00000545889 TERF2IPQ9NYB0 399 aa10.98□□□□□ -0.65
CLIP1-218ENST00000545889 ARHGEF5Q12774 1597 aa10.98□□□□□ -0.65
CLIP1-218ENST00000545889 CHMP4AQ9BY43 222 aa10.98□□□□□ -0.65
CLIP1-218ENST00000545889 ATP10AO60312 1499 aa10.98□□□□□ -0.65
CLIP1-218ENST00000545889 NCBP3Q53F19 620 aaKnown RBP10.97□□□□□ -0.65
CLIP1-218ENST00000545889 BRPF3Q9ULD4 1205 aa10.97□□□□□ -0.65
CLIP1-218ENST00000545889 NCLP19338 710 aaKnown RBP10.97□□□□□ -0.65
CLIP1-218ENST00000545889 WAPLQ7Z5K2 1190 aa10.97□□□□□ -0.65
CLIP1-218ENST00000545889 RSPH6AQ9H0K4 717 aa10.97□□□□□ -0.65
CLIP1-218ENST00000545889 PPP6R1Q9UPN7 881 aa10.97□□□□□ -0.65
CLIP1-218ENST00000545889 RPGRIP1LQ68CZ1 1315 aa10.97□□□□□ -0.65
CLIP1-218ENST00000545889 ANKLE2Q86XL3 938 aa10.97□□□□□ -0.65
CLIP1-218ENST00000545889 ZMYM3Q14202 1370 aa10.96□□□□□ -0.65
CLIP1-218ENST00000545889 SLC12A5Q9H2X9 1139 aa10.96□□□□□ -0.65
CLIP1-218ENST00000545889 PRKRIP1Q9H875 184 aaPredicted RBP10.96□□□□□ -0.65
CLIP1-218ENST00000545889 CDC42BPBQ9Y5S2 1711 aa10.95□□□□□ -0.66
CLIP1-218ENST00000545889 TNRQ92752 1358 aa10.95□□□□□ -0.66
CLIP1-218ENST00000545889 TAF7LQ5H9L4 462 aa10.95□□□□□ -0.66
CLIP1-218ENST00000545889 CLSTN1O94985 981 aa10.95□□□□□ -0.66
CLIP1-218ENST00000545889 MS4A1P11836 297 aa10.95□□□□□ -0.66
CLIP1-218ENST00000545889 CCER2I3L3R5 266 aa10.94□□□□□ -0.66
CLIP1-218ENST00000545889 ATF3P18847 181 aa10.94□□□□□ -0.66
CLIP1-218ENST00000545889 HSP90AA2PQ14568 343 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-218ENST00000545889 RALBP1Q15311 655 aa10.93□□□□□ -0.66
CLIP1-218ENST00000545889 U2AF1L5P0DN76 240 aaPredicted RBP10.93□□□□□ -0.66
CLIP1-218ENST00000545889 U2AF1Q01081 240 aaKnown RBP eCLIP10.93□□□□□ -0.66
CLIP1-218ENST00000545889 ZFYVE16Q7Z3T8 1539 aa10.93□□□□□ -0.66
CLIP1-218ENST00000545889 FRAT2O75474 233 aaPredicted RBP10.93□□□□□ -0.66
CLIP1-218ENST00000545889 GORABQ5T7V8 394 aa10.93□□□□□ -0.66
CLIP1-218ENST00000545889 CHMP3Q9Y3E7 222 aa10.93□□□□□ -0.66
CLIP1-218ENST00000545889 PMFBP1Q8TBY8 1022 aa10.92□□□□□ -0.66
CLIP1-218ENST00000545889 PROSER2Q86WR7 435 aaPredicted RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms