RNA–Protein interactions for RNA: ENST00000545688.5

SNHG1-224, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 3

Gene SNHG1, Length 610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-224ENST00000545688 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.32□□□□□ -0.44
SNHG1-224ENST00000545688 NECTIN2Q92692 538 aa12.31□□□□□ -0.44
SNHG1-224ENST00000545688 KCNC4Q03721 635 aa12.29□□□□□ -0.44
SNHG1-224ENST00000545688 TJAP1Q5JTD0 557 aa12.28□□□□□ -0.44
SNHG1-224ENST00000545688 LMOD2Q6P5Q4 547 aa12.28□□□□□ -0.44
SNHG1-224ENST00000545688 A0A0G2JS52 829 aa12.27□□□□□ -0.45
SNHG1-224ENST00000545688 NLRP7Q8WX94 980 aa12.27□□□□□ -0.45
SNHG1-224ENST00000545688 MTRQ99707 1265 aa12.27□□□□□ -0.45
SNHG1-224ENST00000545688 PHOX2BQ99453 314 aa12.26□□□□□ -0.45
SNHG1-224ENST00000545688 SLC10A3P09131 477 aa12.24□□□□□ -0.45
SNHG1-224ENST00000545688 MAP2K5Q13163 448 aa12.24□□□□□ -0.45
SNHG1-224ENST00000545688 IL21Q9HBE4 155 aa12.23□□□□□ -0.45
SNHG1-224ENST00000545688 CFHP08603 1231 aa12.22□□□□□ -0.45
SNHG1-224ENST00000545688 ZNF516Q92618 1163 aa12.21□□□□□ -0.45
SNHG1-224ENST00000545688 PRR14Q9BWN1 585 aa12.21□□□□□ -0.45
SNHG1-224ENST00000545688 COPS2P61201 443 aa12.2□□□□□ -0.46
SNHG1-224ENST00000545688 DAXXQ9UER7 740 aaPredicted RBP12.2□□□□□ -0.46
SNHG1-224ENST00000545688 MINK1Q8N4C8 1332 aaPredicted RBP12.19□□□□□ -0.46
SNHG1-224ENST00000545688 IRF6O14896 467 aa12.19□□□□□ -0.46
SNHG1-224ENST00000545688 KMT5BQ4FZB7 885 aa12.19□□□□□ -0.46
SNHG1-224ENST00000545688 PCDHB3Q9Y5E6 796 aa12.19□□□□□ -0.46
SNHG1-224ENST00000545688 ACTN4O43707 911 aaKnown RBP12.17□□□□□ -0.46
SNHG1-224ENST00000545688 SLC24A1O60721 1099 aa12.17□□□□□ -0.46
SNHG1-224ENST00000545688 BLOC1S3Q6QNY0 202 aa12.17□□□□□ -0.46
SNHG1-224ENST00000545688 CCDC102AQ96A19 550 aa12.17□□□□□ -0.46
SNHG1-224ENST00000545688 DDX11L8A8MPP1 907 aa12.16□□□□□ -0.46
SNHG1-224ENST00000545688 RSPH4AQ5TD94 716 aa12.15□□□□□ -0.46
SNHG1-224ENST00000545688 RDH13Q8NBN7 331 aa12.15□□□□□ -0.46
SNHG1-224ENST00000545688 NKX2-3Q8TAU0 364 aa12.14□□□□□ -0.47
SNHG1-224ENST00000545688 ZC3H15Q8WU90 426 aaKnown RBP12.14□□□□□ -0.47
SNHG1-224ENST00000545688 ZPR1O75312 459 aa12.12□□□□□ -0.47
SNHG1-224ENST00000545688 ZMYND10O75800 440 aa12.11□□□□□ -0.47
SNHG1-224ENST00000545688 RGS20O76081 388 aa12.11□□□□□ -0.47
SNHG1-224ENST00000545688 BARGINQ6ZT62 677 aa12.11□□□□□ -0.47
SNHG1-224ENST00000545688 SULF1Q8IWU6 871 aa12.11□□□□□ -0.47
SNHG1-224ENST00000545688 MDM2Q00987 491 aaPredicted RBP12.1□□□□□ -0.47
SNHG1-224ENST00000545688 KRI1Q8N9T8 703 aaKnown RBP12.09□□□□□ -0.47
SNHG1-224ENST00000545688 TLL1O43897 1013 aa12.08□□□□□ -0.48
SNHG1-224ENST00000545688 PUS10Q3MIT2 529 aaKnown RBP12.07□□□□□ -0.48
SNHG1-224ENST00000545688 PPP1R18Q6NYC8 613 aa12.07□□□□□ -0.48
SNHG1-224ENST00000545688 GCGRP47871 477 aa12.06□□□□□ -0.48
SNHG1-224ENST00000545688 NR1I2O75469 434 aa12.04□□□□□ -0.48
SNHG1-224ENST00000545688 CD46P15529 392 aa12.04□□□□□ -0.48
SNHG1-224ENST00000545688 FUT2Q10981 343 aa12.04□□□□□ -0.48
SNHG1-224ENST00000545688 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.03□□□□□ -0.48
SNHG1-224ENST00000545688 SCUBE3Q8IX30 993 aa12.02□□□□□ -0.49
SNHG1-224ENST00000545688 GPCPD1Q9NPB8 672 aa12.02□□□□□ -0.49
SNHG1-224ENST00000545688 CLCN1P35523 988 aa12.01□□□□□ -0.49
SNHG1-224ENST00000545688 TMUB1Q9BVT8 246 aa12.01□□□□□ -0.49
SNHG1-224ENST00000545688 ATP6V1AP38606 617 aa12□□□□□ -0.49
SNHG1-224ENST00000545688 MORN1Q5T089 497 aa12□□□□□ -0.49
SNHG1-224ENST00000545688 REPIN1Q9BWE0 567 aaKnown RBP12□□□□□ -0.49
SNHG1-224ENST00000545688 FAM217BQ9NTX9 383 aaPredicted RBP11.99□□□□□ -0.49
SNHG1-224ENST00000545688 ADH1BP00325 375 aa11.98□□□□□ -0.49
SNHG1-224ENST00000545688 GGCXP38435 758 aa11.98□□□□□ -0.49
SNHG1-224ENST00000545688 S1PR4O95977 384 aa11.96□□□□□ -0.49
SNHG1-224ENST00000545688 BCANQ96GW7 911 aa11.96□□□□□ -0.49
SNHG1-224ENST00000545688 SLC27A5Q9Y2P5 690 aa11.96□□□□□ -0.49
SNHG1-224ENST00000545688 TTLL12Q14166 644 aaPredicted RBP11.95□□□□□ -0.5
SNHG1-224ENST00000545688 AMHR2Q16671 573 aa11.95□□□□□ -0.5
SNHG1-224ENST00000545688 PRKD2Q9BZL6 878 aa11.95□□□□□ -0.5
SNHG1-224ENST00000545688 RNF223E7ERA6 249 aa11.94□□□□□ -0.5
SNHG1-224ENST00000545688 SPSB2Q99619 263 aa11.94□□□□□ -0.5
SNHG1-224ENST00000545688 KDM4AO75164 1064 aa11.93□□□□□ -0.5
SNHG1-224ENST00000545688 THAP11Q96EK4 314 aa11.93□□□□□ -0.5
SNHG1-224ENST00000545688 SLC6A16Q9GZN6 736 aa11.93□□□□□ -0.5
SNHG1-224ENST00000545688 TRIM66O15016 1216 aa11.92□□□□□ -0.5
SNHG1-224ENST00000545688 GRIPAP1Q4V328 841 aa11.92□□□□□ -0.5
SNHG1-224ENST00000545688 PPEF1O14829 653 aaPredicted RBP11.91□□□□□ -0.5
SNHG1-224ENST00000545688 SSTR3P32745 418 aaPredicted RBP11.91□□□□□ -0.5
SNHG1-224ENST00000545688 AK7Q96M32 723 aa11.91□□□□□ -0.5
SNHG1-224ENST00000545688 GIGYF2Q6Y7W6 1299 aaKnown RBP11.9□□□□□ -0.5
SNHG1-224ENST00000545688 HLA-CQ95604 372 aa11.9□□□□□ -0.5
SNHG1-224ENST00000545688 IRX2Q9BZI1 471 aaPredicted RBP11.9□□□□□ -0.5
SNHG1-224ENST00000545688 FMNL1O95466 1100 aaPredicted RBP11.89□□□□□ -0.51
SNHG1-224ENST00000545688 RNF19BQ6ZMZ0 732 aa11.89□□□□□ -0.51
SNHG1-224ENST00000545688 V9GY48 417 aaPredicted RBP11.89□□□□□ -0.51
SNHG1-224ENST00000545688 HOXA2O43364 376 aa11.88□□□□□ -0.51
SNHG1-224ENST00000545688 USP46P62068 366 aa11.88□□□□□ -0.51
SNHG1-224ENST00000545688 BRICD5Q6PL45 260 aa11.88□□□□□ -0.51
SNHG1-224ENST00000545688 ANKLE1Q8NAG6 615 aa11.88□□□□□ -0.51
SNHG1-224ENST00000545688 SLC24A3Q9HC58 644 aa11.88□□□□□ -0.51
SNHG1-224ENST00000545688 PARP9Q8IXQ6 854 aa11.87□□□□□ -0.51
SNHG1-224ENST00000545688 FAM160A2Q8N612 972 aaPredicted RBP11.87□□□□□ -0.51
SNHG1-224ENST00000545688 EMID1Q96A84 441 aaPredicted RBP11.87□□□□□ -0.51
SNHG1-224ENST00000545688 SALL2Q9Y467 1007 aaPredicted RBP11.87□□□□□ -0.51
SNHG1-224ENST00000545688 NUTM1Q86Y26 1132 aa11.86□□□□□ -0.51
SNHG1-224ENST00000545688 GUCA2AQ02747 115 aa11.85□□□□□ -0.51
SNHG1-224ENST00000545688 Q3C1V9 767 aa11.84□□□□□ -0.51
SNHG1-224ENST00000545688 PRDM9Q9NQV7 894 aa11.84□□□□□ -0.51
SNHG1-224ENST00000545688 SLC19A1P41440 591 aa11.82□□□□□ -0.52
SNHG1-224ENST00000545688 PLA2G2CQ5R387 149 aa11.82□□□□□ -0.52
SNHG1-224ENST00000545688 PDE4DQ08499 809 aa11.81□□□□□ -0.52
SNHG1-224ENST00000545688 MSS51Q4VC12 460 aa11.81□□□□□ -0.52
SNHG1-224ENST00000545688 LIAT1Q6ZQX7 453 aa11.81□□□□□ -0.52
SNHG1-224ENST00000545688 SPIRE2Q8WWL2 714 aa11.81□□□□□ -0.52
SNHG1-224ENST00000545688 MS4A1P11836 297 aa11.8□□□□□ -0.52
SNHG1-224ENST00000545688 BEGAINQ9BUH8 593 aa11.8□□□□□ -0.52
SNHG1-224ENST00000545688 USB1Q9BQ65 265 aaKnown RBP11.78□□□□□ -0.52
SNHG1-224ENST00000545688 FCF1Q9Y324 198 aaKnown RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms