RNA–Protein interactions for RNA: ENST00000545432.5

RTN3-214, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-214ENST00000545432 PTPN23Q9H3S7 1636 aa23.22■■□□□ 1.31
RTN3-214ENST00000545432 PLEKHG1Q9ULL1 1385 aa23.21■■□□□ 1.31
RTN3-214ENST00000545432 LOC105371045A0A1W2PR82 267 aa23.2■■□□□ 1.3
RTN3-214ENST00000545432 TBX22Q9Y458 520 aa23.2■■□□□ 1.3
RTN3-214ENST00000545432 FGD6Q6ZV73 1430 aa23.19■■□□□ 1.3
RTN3-214ENST00000545432 RPRD2Q5VT52 1461 aaKnown RBP23.18■■□□□ 1.3
RTN3-214ENST00000545432 SPATA31A6Q5VVP1 1343 aa23.15■■□□□ 1.3
RTN3-214ENST00000545432 HDGFP51858 240 aaKnown RBP23.15■■□□□ 1.3
RTN3-214ENST00000545432 CHIC2Q9UKJ5 165 aa23.15■■□□□ 1.3
RTN3-214ENST00000545432 ADGRL2O95490 1459 aa23.15■■□□□ 1.3
RTN3-214ENST00000545432 CHD2O14647 1828 aaKnown RBP23.15■■□□□ 1.3
RTN3-214ENST00000545432 COL16A1Q07092 1604 aaPredicted RBP23.14■■□□□ 1.29
RTN3-214ENST00000545432 PHLPP1O60346 1717 aa23.13■■□□□ 1.29
RTN3-214ENST00000545432 RIMS2Q9UQ26 1411 aa23.12■■□□□ 1.29
RTN3-214ENST00000545432 UPF1Q92900 1129 aaKnown RBP eCLIP23.11■■□□□ 1.29
RTN3-214ENST00000545432 LRP6O75581 1613 aa23.11■■□□□ 1.29
RTN3-214ENST00000545432 ZNF772Q68DY9 489 aaPredicted RBP23.1■■□□□ 1.29
RTN3-214ENST00000545432 BCANQ96GW7 911 aa23.1■■□□□ 1.29
RTN3-214ENST00000545432 C19orf44Q9H6X5 657 aa23.1■■□□□ 1.29
RTN3-214ENST00000545432 PIK3R4Q99570 1358 aa23.1■■□□□ 1.29
RTN3-214ENST00000545432 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.09■■□□□ 1.29
RTN3-214ENST00000545432 ADAMTS13Q76LX8 1427 aa23.08■■□□□ 1.29
RTN3-214ENST00000545432 CADPS2Q86UW7 1296 aa23.08■■□□□ 1.29
RTN3-214ENST00000545432 TMEM131LA2VDJ0 1609 aa23.08■■□□□ 1.28
RTN3-214ENST00000545432 AHDC1Q5TGY3 1603 aaPredicted RBP23.07■■□□□ 1.28
RTN3-214ENST00000545432 ANKRD50Q9ULJ7 1429 aa23.07■■□□□ 1.28
RTN3-214ENST00000545432 SETD1AO15047 1707 aaKnown RBP23.06■■□□□ 1.28
RTN3-214ENST00000545432 PPP1R15AO75807 674 aaPredicted RBP23.04■■□□□ 1.28
RTN3-214ENST00000545432 APLP2Q06481 763 aa23.03■■□□□ 1.28
RTN3-214ENST00000545432 CDK12Q9NYV4 1490 aaPredicted RBP23■■□□□ 1.27
RTN3-214ENST00000545432 BRINP3Q76B58 766 aa23■■□□□ 1.27
RTN3-214ENST00000545432 DIP2AQ14689 1571 aa23■■□□□ 1.27
RTN3-214ENST00000545432 SHPRHQ149N8 1683 aa23■■□□□ 1.27
RTN3-214ENST00000545432 ATF3P18847 181 aa22.99■■□□□ 1.27
RTN3-214ENST00000545432 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.99■■□□□ 1.27
RTN3-214ENST00000545432 MYO5BQ9ULV0 1848 aa22.98■■□□□ 1.27
RTN3-214ENST00000545432 RXRBP28702 533 aa22.98■■□□□ 1.27
RTN3-214ENST00000545432 GCC2Q8IWJ2 1684 aa22.97■■□□□ 1.27
RTN3-214ENST00000545432 MEX3CQ5U5Q3 659 aaKnown RBP22.97■■□□□ 1.27
RTN3-214ENST00000545432 PTPRUQ92729 1446 aa22.97■■□□□ 1.27
RTN3-214ENST00000545432 AMOTL2Q9Y2J4 779 aa22.96■■□□□ 1.27
RTN3-214ENST00000545432 DCCP43146 1447 aa22.96■■□□□ 1.27
RTN3-214ENST00000545432 C14orf37Q86TY3 774 aa22.95■■□□□ 1.26
RTN3-214ENST00000545432 SETD5Q9C0A6 1442 aa22.95■■□□□ 1.26
RTN3-214ENST00000545432 TRIM52Q96A61 297 aa22.94■■□□□ 1.26
RTN3-214ENST00000545432 UNC13BO14795 1591 aa22.92■■□□□ 1.26
RTN3-214ENST00000545432 NUTM2DQ5VT03 806 aaPredicted RBP22.91■■□□□ 1.26
RTN3-214ENST00000545432 CHGAP10645 457 aaKnown RBP22.9■■□□□ 1.26
RTN3-214ENST00000545432 TRPM2O94759 1503 aa22.9■■□□□ 1.26
RTN3-214ENST00000545432 FAM50AQ14320 339 aaKnown RBP22.88■■□□□ 1.25
RTN3-214ENST00000545432 ROCK1Q13464 1354 aa22.88■■□□□ 1.25
RTN3-214ENST00000545432 E9PCH4 1651 aa22.87■■□□□ 1.25
RTN3-214ENST00000545432 AFF2P51816 1311 aa22.87■■□□□ 1.25
RTN3-214ENST00000545432 LRRC59Q96AG4 307 aaKnown RBP22.87■■□□□ 1.25
RTN3-214ENST00000545432 MST1RQ04912 1400 aa22.87■■□□□ 1.25
RTN3-214ENST00000545432 ASXL1Q8IXJ9 1541 aa22.86■■□□□ 1.25
RTN3-214ENST00000545432 NUTM2BA6NNL0 878 aaPredicted RBP22.84■■□□□ 1.25
RTN3-214ENST00000545432 NUTM2EB1AL46 878 aaPredicted RBP22.84■■□□□ 1.25
RTN3-214ENST00000545432 NUTM2AQ8IVF1 878 aaPredicted RBP22.84■■□□□ 1.25
RTN3-214ENST00000545432 RBM6P78332 1123 aaKnown RBP22.83■■□□□ 1.25
RTN3-214ENST00000545432 IQGAP3Q86VI3 1631 aa22.82■■□□□ 1.24
RTN3-214ENST00000545432 XRN1Q8IZH2 1706 aaKnown RBP22.82■■□□□ 1.24
RTN3-214ENST00000545432 SETBP1Q9Y6X0 1596 aa22.82■■□□□ 1.24
RTN3-214ENST00000545432 NRXN3Q9Y4C0 1643 aa22.82■■□□□ 1.24
RTN3-214ENST00000545432 NHSL1Q5SYE7 1610 aa22.81■■□□□ 1.24
RTN3-214ENST00000545432 PNPLA6Q8IY17 1366 aa22.8■■□□□ 1.24
RTN3-214ENST00000545432 QTRT2Q9H974 415 aaKnown RBP22.8■■□□□ 1.24
RTN3-214ENST00000545432 NUP155O75694 1391 aa22.79■■□□□ 1.24
RTN3-214ENST00000545432 METP08581 1390 aa22.79■■□□□ 1.24
RTN3-214ENST00000545432 RGS12O14924 1447 aa22.79■■□□□ 1.24
RTN3-214ENST00000545432 ADGRL3Q9HAR2 1447 aa22.76■■□□□ 1.23
RTN3-214ENST00000545432 DDX17Q92841 729 aaKnown RBP22.73■■□□□ 1.23
RTN3-214ENST00000545432 C8orf37Q96NL8 207 aa22.73■■□□□ 1.23
RTN3-214ENST00000545432 SOS2Q07890 1332 aaPredicted RBP22.72■■□□□ 1.23
RTN3-214ENST00000545432 LAMC1P11047 1609 aa22.71■■□□□ 1.23
RTN3-214ENST00000545432 NGLY1Q96IV0 654 aa22.7■■□□□ 1.22
RTN3-214ENST00000545432 C1orf167Q5SNV9 1468 aa22.7■■□□□ 1.22
RTN3-214ENST00000545432 FNBP4Q8N3X1 1017 aaPredicted RBP22.69■■□□□ 1.22
RTN3-214ENST00000545432 PRAG1Q86YV5 1406 aa22.67■■□□□ 1.22
RTN3-214ENST00000545432 SRCAPQ6ZRS2 3230 aa22.67■■□□□ 1.22
RTN3-214ENST00000545432 ZNF326Q5BKZ1 582 aaKnown RBP22.65■■□□□ 1.22
RTN3-214ENST00000545432 NEXMIFQ5QGS0 1516 aa22.65■■□□□ 1.22
RTN3-214ENST00000545432 PTCH1Q13635 1447 aa22.65■■□□□ 1.22
RTN3-214ENST00000545432 ATAD2Q6PL18 1390 aa22.64■■□□□ 1.22
RTN3-214ENST00000545432 TRPC5Q9UL62 973 aaPredicted RBP22.64■■□□□ 1.21
RTN3-214ENST00000545432 ADAMTS2O95450 1211 aa22.63■■□□□ 1.21
RTN3-214ENST00000545432 ORAI2Q96SN7 254 aa22.63■■□□□ 1.21
RTN3-214ENST00000545432 USP21Q9UK80 565 aa22.62■■□□□ 1.21
RTN3-214ENST00000545432 NALCNQ8IZF0 1738 aa22.62■■□□□ 1.21
RTN3-214ENST00000545432 ATRNO75882 1429 aa22.61■■□□□ 1.21
RTN3-214ENST00000545432 SPHKAPQ2M3C7 1700 aa22.61■■□□□ 1.21
RTN3-214ENST00000545432 ROBO2Q9HCK4 1378 aa22.61■■□□□ 1.21
RTN3-214ENST00000545432 VGFO15240 615 aaPredicted RBP22.57■■□□□ 1.2
RTN3-214ENST00000545432 CCDC125Q86Z20 511 aa22.57■■□□□ 1.2
RTN3-214ENST00000545432 MYOM2P54296 1465 aa22.55■■□□□ 1.2
RTN3-214ENST00000545432 FOXD1Q16676 465 aa22.55■■□□□ 1.2
RTN3-214ENST00000545432 CLTCL1P53675 1640 aa22.55■■□□□ 1.2
RTN3-214ENST00000545432 COL22A1Q8NFW1 1626 aaPredicted RBP22.55■■□□□ 1.2
RTN3-214ENST00000545432 RPGRIP1LQ68CZ1 1315 aa22.54■■□□□ 1.2
RTN3-214ENST00000545432 BCL9LQ86UU0 1499 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms