RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 BCAMP50895 628 aa7.29□□□□□ -1.24
USP28-210ENST00000542033 NYAP1Q6ZVC0 841 aa7.29□□□□□ -1.24
USP28-210ENST00000542033 TMEM134Q9H6X4 195 aa7.29□□□□□ -1.24
USP28-210ENST00000542033 TSR3Q9UJK0 312 aaKnown RBP7.29□□□□□ -1.24
USP28-210ENST00000542033 RNF40O75150 1001 aa7.28□□□□□ -1.24
USP28-210ENST00000542033 PTPN5P54829 565 aa7.28□□□□□ -1.24
USP28-210ENST00000542033 SWT1Q5T5J6 900 aaKnown RBP7.28□□□□□ -1.24
USP28-210ENST00000542033 CCDC102AQ96A19 550 aa7.28□□□□□ -1.24
USP28-210ENST00000542033 HPS5Q9UPZ3 1129 aa7.28□□□□□ -1.24
USP28-210ENST00000542033 PPP4CP60510 307 aa7.27□□□□□ -1.25
USP28-210ENST00000542033 RSPH4AQ5TD94 716 aa7.27□□□□□ -1.25
USP28-210ENST00000542033 PLA2G2EQ9NZK7 142 aa7.25□□□□□ -1.25
USP28-210ENST00000542033 DAXXQ9UER7 740 aaPredicted RBP7.25□□□□□ -1.25
USP28-210ENST00000542033 SULF1Q8IWU6 871 aa7.24□□□□□ -1.25
USP28-210ENST00000542033 PRR14Q9BWN1 585 aa7.24□□□□□ -1.25
USP28-210ENST00000542033 WBP1LQ9NX94 342 aa7.24□□□□□ -1.25
USP28-210ENST00000542033 AK7Q96M32 723 aa7.23□□□□□ -1.25
USP28-210ENST00000542033 SLC24A3Q9HC58 644 aa7.23□□□□□ -1.25
USP28-210ENST00000542033 CLCN1P35523 988 aa7.22□□□□□ -1.25
USP28-210ENST00000542033 PHOX2BQ99453 314 aa7.22□□□□□ -1.25
USP28-210ENST00000542033 MDM2Q00987 491 aaPredicted RBP7.21□□□□□ -1.26
USP28-210ENST00000542033 KMT5BQ4FZB7 885 aa7.21□□□□□ -1.26
USP28-210ENST00000542033 GPCPD1Q9NPB8 672 aa7.21□□□□□ -1.26
USP28-210ENST00000542033 AMHR2Q16671 573 aa7.2□□□□□ -1.26
USP28-210ENST00000542033 RDH13Q8NBN7 331 aa7.2□□□□□ -1.26
USP28-210ENST00000542033 DDX11L8A8MPP1 907 aa7.19□□□□□ -1.26
USP28-210ENST00000542033 TTLL12Q14166 644 aaPredicted RBP7.19□□□□□ -1.26
USP28-210ENST00000542033 NLRP7Q8WX94 980 aa7.19□□□□□ -1.26
USP28-210ENST00000542033 TRIM66O15016 1216 aa7.18□□□□□ -1.26
USP28-210ENST00000542033 CFHP08603 1231 aa7.18□□□□□ -1.26
USP28-210ENST00000542033 SLC10A3P09131 477 aa7.16□□□□□ -1.26
USP28-210ENST00000542033 APLP1P51693 650 aa7.16□□□□□ -1.26
USP28-210ENST00000542033 ACTN4O43707 911 aaKnown RBP7.14□□□□□ -1.27
USP28-210ENST00000542033 TMUB1Q9BVT8 246 aa7.14□□□□□ -1.27
USP28-210ENST00000542033 FAM217BQ9NTX9 383 aaPredicted RBP7.14□□□□□ -1.27
USP28-210ENST00000542033 PCDHB3Q9Y5E6 796 aa7.14□□□□□ -1.27
USP28-210ENST00000542033 ITGBL1O95965 494 aaPredicted RBP7.13□□□□□ -1.27
USP28-210ENST00000542033 CD46P15529 392 aa7.13□□□□□ -1.27
USP28-210ENST00000542033 PDE4DQ08499 809 aa7.13□□□□□ -1.27
USP28-210ENST00000542033 GRIPAP1Q4V328 841 aa7.13□□□□□ -1.27
USP28-210ENST00000542033 GIGYF2Q6Y7W6 1299 aaKnown RBP7.13□□□□□ -1.27
USP28-210ENST00000542033 SSTR3P32745 418 aaPredicted RBP7.12□□□□□ -1.27
USP28-210ENST00000542033 GCGRP47871 477 aa7.12□□□□□ -1.27
USP28-210ENST00000542033 KCNC4Q03721 635 aa7.12□□□□□ -1.27
USP28-210ENST00000542033 PARP9Q8IXQ6 854 aa7.12□□□□□ -1.27
USP28-210ENST00000542033 IL21Q9HBE4 155 aa7.12□□□□□ -1.27
USP28-210ENST00000542033 NEUROD2Q15784 382 aa7.11□□□□□ -1.27
USP28-210ENST00000542033 IFFO2Q5TF58 517 aa7.11□□□□□ -1.27
USP28-210ENST00000542033 MTRQ99707 1265 aa7.11□□□□□ -1.27
USP28-210ENST00000542033 NR1I2O75469 434 aa7.1□□□□□ -1.27
USP28-210ENST00000542033 ATP6V1AP38606 617 aa7.1□□□□□ -1.27
USP28-210ENST00000542033 USP46P62068 366 aa7.1□□□□□ -1.27
USP28-210ENST00000542033 NUTM1Q86Y26 1132 aa7.1□□□□□ -1.27
USP28-210ENST00000542033 REPIN1Q9BWE0 567 aaKnown RBP7.1□□□□□ -1.27
USP28-210ENST00000542033 KDM4AO75164 1064 aa7.09□□□□□ -1.27
USP28-210ENST00000542033 COPS2P61201 443 aa7.09□□□□□ -1.27
USP28-210ENST00000542033 TJAP1Q5JTD0 557 aa7.09□□□□□ -1.27
USP28-210ENST00000542033 FUT2Q10981 343 aa7.08□□□□□ -1.28
USP28-210ENST00000542033 DIXDC1Q155Q3 683 aa7.08□□□□□ -1.28
USP28-210ENST00000542033 BLOC1S3Q6QNY0 202 aa7.08□□□□□ -1.28
USP28-210ENST00000542033 ZPR1O75312 459 aa7.07□□□□□ -1.28
USP28-210ENST00000542033 BRPF1P55201 1214 aaPredicted RBP7.07□□□□□ -1.28
USP28-210ENST00000542033 MORN1Q5T089 497 aa7.06□□□□□ -1.28
USP28-210ENST00000542033 BEGAINQ9BUH8 593 aa7.06□□□□□ -1.28
USP28-210ENST00000542033 GPBP1L1Q9HC44 474 aaPredicted RBP7.06□□□□□ -1.28
USP28-210ENST00000542033 RGS20O76081 388 aa7.05□□□□□ -1.28
USP28-210ENST00000542033 MS4A1P11836 297 aa7.05□□□□□ -1.28
USP28-210ENST00000542033 PUS10Q3MIT2 529 aaKnown RBP7.05□□□□□ -1.28
USP28-210ENST00000542033 KDM4CQ9H3R0 1056 aa7.05□□□□□ -1.28
USP28-210ENST00000542033 HOXA2O43364 376 aa7.04□□□□□ -1.28
USP28-210ENST00000542033 Q3C1V9 767 aa7.04□□□□□ -1.28
USP28-210ENST00000542033 SCUBE3Q8IX30 993 aa7.04□□□□□ -1.28
USP28-210ENST00000542033 ZNF516Q92618 1163 aa7.04□□□□□ -1.28
USP28-210ENST00000542033 GGCXP38435 758 aa7.03□□□□□ -1.28
USP28-210ENST00000542033 A0A0G2JS52 829 aa7.02□□□□□ -1.29
USP28-210ENST00000542033 FMNL1O95466 1100 aaPredicted RBP7.02□□□□□ -1.29
USP28-210ENST00000542033 ADH1BP00325 375 aa7.02□□□□□ -1.29
USP28-210ENST00000542033 SPIRE2Q8WWL2 714 aa7.02□□□□□ -1.29
USP28-210ENST00000542033 DDRGK1Q96HY6 314 aa7.02□□□□□ -1.29
USP28-210ENST00000542033 SLC27A5Q9Y2P5 690 aa7.02□□□□□ -1.29
USP28-210ENST00000542033 SALL2Q9Y467 1007 aaPredicted RBP7.02□□□□□ -1.29
USP28-210ENST00000542033 TBC1D2Q9BYX2 928 aa7.01□□□□□ -1.29
USP28-210ENST00000542033 TLL1O43897 1013 aa7□□□□□ -1.29
USP28-210ENST00000542033 GJA5P36382 358 aa7□□□□□ -1.29
USP28-210ENST00000542033 SPSB2Q99619 263 aa7□□□□□ -1.29
USP28-210ENST00000542033 RSPH6AQ9H0K4 717 aa7□□□□□ -1.29
USP28-210ENST00000542033 FDX1P10109 184 aa6.99□□□□□ -1.29
USP28-210ENST00000542033 BRICD5Q6PL45 260 aa6.98□□□□□ -1.29
USP28-210ENST00000542033 NKX2-3Q8TAU0 364 aa6.98□□□□□ -1.29
USP28-210ENST00000542033 IRX2Q9BZI1 471 aaPredicted RBP6.98□□□□□ -1.29
USP28-210ENST00000542033 SLC6A16Q9GZN6 736 aa6.98□□□□□ -1.29
USP28-210ENST00000542033 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.98□□□□□ -1.29
USP28-210ENST00000542033 MOXD2PA6NHM9 499 aa6.97□□□□□ -1.29
USP28-210ENST00000542033 PPP1R18Q6NYC8 613 aa6.97□□□□□ -1.29
USP28-210ENST00000542033 IL27Q8NEV9 243 aa6.97□□□□□ -1.29
USP28-210ENST00000542033 THAP11Q96EK4 314 aa6.97□□□□□ -1.29
USP28-210ENST00000542033 FAM117AQ9C073 453 aa6.97□□□□□ -1.29
USP28-210ENST00000542033 GUCA2AQ02747 115 aa6.96□□□□□ -1.3
USP28-210ENST00000542033 MSS51Q4VC12 460 aa6.96□□□□□ -1.3
USP28-210ENST00000542033 RSBN1LQ6PCB5 846 aaPredicted RBP6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms