RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 PRR20CP86479 221 aa9.46□□□□□ -0.9
USP48-215ENST00000534705 PRR20DP86480 221 aa9.46□□□□□ -0.9
USP48-215ENST00000534705 PRR20BP86481 221 aa9.46□□□□□ -0.9
USP48-215ENST00000534705 PRR20AP86496 221 aa9.46□□□□□ -0.9
USP48-215ENST00000534705 SPRYD7Q5W111 196 aa9.46□□□□□ -0.9
USP48-215ENST00000534705 ZNF598Q86UK7 904 aaKnown RBP9.46□□□□□ -0.9
USP48-215ENST00000534705 TRIM67Q6ZTA4 783 aa9.45□□□□□ -0.9
USP48-215ENST00000534705 ANKLE1Q8NAG6 615 aa9.45□□□□□ -0.9
USP48-215ENST00000534705 MYT1Q01538 1121 aa9.44□□□□□ -0.9
USP48-215ENST00000534705 BLOC1S3Q6QNY0 202 aa9.43□□□□□ -0.9
USP48-215ENST00000534705 DNAJB2P25686 324 aa9.42□□□□□ -0.9
USP48-215ENST00000534705 KMT5BQ4FZB7 885 aa9.42□□□□□ -0.9
USP48-215ENST00000534705 ACTN4O43707 911 aaKnown RBP9.4□□□□□ -0.9
USP48-215ENST00000534705 RBM46Q8TBY0 533 aaKnown RBP9.4□□□□□ -0.9
USP48-215ENST00000534705 EMID1Q96A84 441 aaPredicted RBP9.4□□□□□ -0.9
USP48-215ENST00000534705 ZNF697Q5TEC3 545 aa9.39□□□□□ -0.91
USP48-215ENST00000534705 FAM187AA6NFU0 413 aa9.37□□□□□ -0.91
USP48-215ENST00000534705 LIAT1Q6ZQX7 453 aa9.37□□□□□ -0.91
USP48-215ENST00000534705 S1PR4O95977 384 aa9.36□□□□□ -0.91
USP48-215ENST00000534705 TMEM134Q9H6X4 195 aa9.36□□□□□ -0.91
USP48-215ENST00000534705 PPEF1O14829 653 aaPredicted RBP9.35□□□□□ -0.91
USP48-215ENST00000534705 TLL1O43897 1013 aa9.35□□□□□ -0.91
USP48-215ENST00000534705 GDF9O60383 454 aa9.35□□□□□ -0.91
USP48-215ENST00000534705 NR1I2O75469 434 aa9.35□□□□□ -0.91
USP48-215ENST00000534705 ADH1BP00325 375 aa9.34□□□□□ -0.91
USP48-215ENST00000534705 POTECB2RU33 542 aa9.33□□□□□ -0.92
USP48-215ENST00000534705 LMOD2Q6P5Q4 547 aa9.33□□□□□ -0.92
USP48-215ENST00000534705 CFAP44Q96MT7 982 aa9.33□□□□□ -0.92
USP48-215ENST00000534705 SLC6A16Q9GZN6 736 aa9.33□□□□□ -0.92
USP48-215ENST00000534705 TNFRSF10AO00220 468 aa9.32□□□□□ -0.92
USP48-215ENST00000534705 CFHP08603 1231 aa9.32□□□□□ -0.92
USP48-215ENST00000534705 PTGDRQ13258 359 aa9.32□□□□□ -0.92
USP48-215ENST00000534705 PAXIP1Q6ZW49 1069 aaPredicted RBP9.32□□□□□ -0.92
USP48-215ENST00000534705 RCCD1A6NED2 376 aa9.31□□□□□ -0.92
USP48-215ENST00000534705 TREML4Q6UXN2 200 aa9.31□□□□□ -0.92
USP48-215ENST00000534705 ADGRG1Q9Y653 693 aa9.31□□□□□ -0.92
USP48-215ENST00000534705 ARHGEF1Q92888 912 aaKnown RBP9.3□□□□□ -0.92
USP48-215ENST00000534705 RSPH4AQ5TD94 716 aa9.29□□□□□ -0.92
USP48-215ENST00000534705 AAASQ9NRG9 546 aa9.29□□□□□ -0.92
USP48-215ENST00000534705 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.28□□□□□ -0.92
USP48-215ENST00000534705 SLC10A3P09131 477 aa9.26□□□□□ -0.93
USP48-215ENST00000534705 MLLT3P42568 568 aaPredicted RBP9.26□□□□□ -0.93
USP48-215ENST00000534705 SCUBE3Q8IX30 993 aa9.26□□□□□ -0.93
USP48-215ENST00000534705 ST8SIA5O15466 376 aa9.25□□□□□ -0.93
USP48-215ENST00000534705 RPIAP49247 311 aa9.25□□□□□ -0.93
USP48-215ENST00000534705 PLCB2Q00722 1185 aa9.25□□□□□ -0.93
USP48-215ENST00000534705 CRIPAKQ8N1N5 446 aa9.25□□□□□ -0.93
USP48-215ENST00000534705 PLA2G2CQ5R387 149 aa9.24□□□□□ -0.93
USP48-215ENST00000534705 SPSB2Q99619 263 aa9.24□□□□□ -0.93
USP48-215ENST00000534705 NUTM2FA1L443 756 aa9.23□□□□□ -0.93
USP48-215ENST00000534705 CD2BP2O95400 341 aaKnown RBP9.23□□□□□ -0.93
USP48-215ENST00000534705 OATP04181 439 aa9.23□□□□□ -0.93
USP48-215ENST00000534705 FOXC1Q12948 553 aa9.23□□□□□ -0.93
USP48-215ENST00000534705 LCE2AQ5TA79 106 aaPredicted RBP9.23□□□□□ -0.93
USP48-215ENST00000534705 PKD2L1Q9P0L9 805 aa9.23□□□□□ -0.93
USP48-215ENST00000534705 FCHSD2O94868 740 aa9.22□□□□□ -0.93
USP48-215ENST00000534705 AVPP01185 164 aa9.21□□□□□ -0.94
USP48-215ENST00000534705 CTC1Q2NKJ3 1217 aa9.2□□□□□ -0.94
USP48-215ENST00000534705 FAM161AQ3B820 660 aa9.2□□□□□ -0.94
USP48-215ENST00000534705 CYP4X1Q8N118 509 aa9.2□□□□□ -0.94
USP48-215ENST00000534705 AXIN1O15169 862 aa9.19□□□□□ -0.94
USP48-215ENST00000534705 WFS1O76024 890 aa9.18□□□□□ -0.94
USP48-215ENST00000534705 PXYLP1Q8TE99 480 aa9.18□□□□□ -0.94
USP48-215ENST00000534705 TOR4AQ9NXH8 423 aa9.18□□□□□ -0.94
USP48-215ENST00000534705 C11orf95C9JLR9 678 aaPredicted RBP9.17□□□□□ -0.94
USP48-215ENST00000534705 SMCPP49901 116 aaPredicted RBP9.17□□□□□ -0.94
USP48-215ENST00000534705 PUS10Q3MIT2 529 aaKnown RBP9.17□□□□□ -0.94
USP48-215ENST00000534705 GMPR2Q9P2T1 348 aaKnown RBP9.15□□□□□ -0.94
USP48-215ENST00000534705 STK17AQ9UEE5 414 aa9.15□□□□□ -0.94
USP48-215ENST00000534705 FMNL1O95466 1100 aaPredicted RBP9.14□□□□□ -0.95
USP48-215ENST00000534705 KCNV2Q8TDN2 545 aa9.14□□□□□ -0.95
USP48-215ENST00000534705 DACH1Q9UI36 760 aa9.14□□□□□ -0.95
USP48-215ENST00000534705 FCF1Q9Y324 198 aaKnown RBP9.14□□□□□ -0.95
USP48-215ENST00000534705 ZBTB24O43167 697 aaPredicted RBP9.13□□□□□ -0.95
USP48-215ENST00000534705 INSM1Q01101 510 aaPredicted RBP9.13□□□□□ -0.95
USP48-215ENST00000534705 ATP6V1AP38606 617 aa9.12□□□□□ -0.95
USP48-215ENST00000534705 HIC1Q14526 733 aa9.12□□□□□ -0.95
USP48-215ENST00000534705 MORN1Q5T089 497 aa9.12□□□□□ -0.95
USP48-215ENST00000534705 METTL3Q86U44 580 aaKnown RBP9.12□□□□□ -0.95
USP48-215ENST00000534705 SALL2Q9Y467 1007 aaPredicted RBP9.12□□□□□ -0.95
USP48-215ENST00000534705 TTC24A2A3L6 582 aaPredicted RBP9.11□□□□□ -0.95
USP48-215ENST00000534705 WIPF1O43516 503 aa9.11□□□□□ -0.95
USP48-215ENST00000534705 RDH13Q8NBN7 331 aa9.11□□□□□ -0.95
USP48-215ENST00000534705 THAP11Q96EK4 314 aa9.11□□□□□ -0.95
USP48-215ENST00000534705 DAXXQ9UER7 740 aaPredicted RBP9.11□□□□□ -0.95
USP48-215ENST00000534705 NFX1Q12986 1120 aaKnown RBP9.09□□□□□ -0.95
USP48-215ENST00000534705 P3H3Q8IVL6 736 aa9.08□□□□□ -0.96
USP48-215ENST00000534705 FAM160A2Q8N612 972 aaPredicted RBP9.08□□□□□ -0.96
USP48-215ENST00000534705 TSHZ2Q9NRE2 1034 aa9.08□□□□□ -0.96
USP48-215ENST00000534705 FUT2Q10981 343 aa9.07□□□□□ -0.96
USP48-215ENST00000534705 SNIP1Q8TAD8 396 aaKnown RBP9.07□□□□□ -0.96
USP48-215ENST00000534705 SLC27A5Q9Y2P5 690 aa9.07□□□□□ -0.96
USP48-215ENST00000534705 WNT7AO00755 349 aa9.06□□□□□ -0.96
USP48-215ENST00000534705 GRIPAP1Q4V328 841 aa9.06□□□□□ -0.96
USP48-215ENST00000534705 MSS51Q4VC12 460 aa9.06□□□□□ -0.96
USP48-215ENST00000534705 BRICD5Q6PL45 260 aa9.06□□□□□ -0.96
USP48-215ENST00000534705 SULF1Q8IWU6 871 aa9.06□□□□□ -0.96
USP48-215ENST00000534705 SENP2Q9HC62 589 aa9.06□□□□□ -0.96
USP48-215ENST00000534705 DDX11L8A8MPP1 907 aa9.05□□□□□ -0.96
USP48-215ENST00000534705 GCGRP47871 477 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms