RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 MAP2K5Q13163 448 aa5.99□□□□□ -1.45
CD44-234ENST00000531873 ZNF516Q92618 1163 aa5.99□□□□□ -1.45
CD44-234ENST00000531873 NUTM2FA1L443 756 aa5.98□□□□□ -1.45
CD44-234ENST00000531873 FECHP22830 423 aa5.98□□□□□ -1.45
CD44-234ENST00000531873 SAMD7Q7Z3H4 446 aa5.98□□□□□ -1.45
CD44-234ENST00000531873 IL27Q8NEV9 243 aa5.98□□□□□ -1.45
CD44-234ENST00000531873 DDX12PQ92771 950 aa5.98□□□□□ -1.45
CD44-234ENST00000531873 TMUB1Q9BVT8 246 aa5.98□□□□□ -1.45
CD44-234ENST00000531873 MINK1Q8N4C8 1332 aaPredicted RBP5.98□□□□□ -1.45
CD44-234ENST00000531873 GNPATO15228 680 aa5.97□□□□□ -1.45
CD44-234ENST00000531873 AMHR2Q16671 573 aa5.97□□□□□ -1.45
CD44-234ENST00000531873 LCE2AQ5TA79 106 aaPredicted RBP5.97□□□□□ -1.45
CD44-234ENST00000531873 TRIM67Q6ZTA4 783 aa5.97□□□□□ -1.45
CD44-234ENST00000531873 IRF6O14896 467 aa5.96□□□□□ -1.46
CD44-234ENST00000531873 GGCXP38435 758 aa5.96□□□□□ -1.46
CD44-234ENST00000531873 HIC1Q14526 733 aa5.96□□□□□ -1.46
CD44-234ENST00000531873 PARP9Q8IXQ6 854 aa5.96□□□□□ -1.46
CD44-234ENST00000531873 RBM33Q96EV2 1170 aaKnown RBP5.96□□□□□ -1.46
CD44-234ENST00000531873 FAM117AQ9C073 453 aa5.96□□□□□ -1.46
CD44-234ENST00000531873 PLEKHG3A1L390 1219 aa5.95□□□□□ -1.46
CD44-234ENST00000531873 DGAT1O75907 488 aa5.95□□□□□ -1.46
CD44-234ENST00000531873 MYT1Q01538 1121 aa5.95□□□□□ -1.46
CD44-234ENST00000531873 EN1Q05925 392 aaPredicted RBP5.95□□□□□ -1.46
CD44-234ENST00000531873 ARXQ96QS3 562 aa5.95□□□□□ -1.46
CD44-234ENST00000531873 FCHSD2O94868 740 aa5.94□□□□□ -1.46
CD44-234ENST00000531873 APLP1P51693 650 aa5.94□□□□□ -1.46
CD44-234ENST00000531873 PTGDRQ13258 359 aa5.94□□□□□ -1.46
CD44-234ENST00000531873 TREML4Q6UXN2 200 aa5.94□□□□□ -1.46
CD44-234ENST00000531873 NKX2-3Q8TAU0 364 aa5.94□□□□□ -1.46
CD44-234ENST00000531873 DAXXQ9UER7 740 aaPredicted RBP5.94□□□□□ -1.46
CD44-234ENST00000531873 POTECB2RU33 542 aa5.93□□□□□ -1.46
CD44-234ENST00000531873 PRSS12P56730 875 aa5.93□□□□□ -1.46
CD44-234ENST00000531873 PRR20EP86478 221 aa5.93□□□□□ -1.46
CD44-234ENST00000531873 PRR20CP86479 221 aa5.93□□□□□ -1.46
CD44-234ENST00000531873 PRR20DP86480 221 aa5.93□□□□□ -1.46
CD44-234ENST00000531873 PRR20BP86481 221 aa5.93□□□□□ -1.46
CD44-234ENST00000531873 PRR20AP86496 221 aa5.93□□□□□ -1.46
CD44-234ENST00000531873 CDCA7LQ96GN5 454 aa5.93□□□□□ -1.46
CD44-234ENST00000531873 CDHR5Q9HBB8 845 aa5.93□□□□□ -1.46
CD44-234ENST00000531873 FAM198AQ9UFP1 575 aa5.93□□□□□ -1.46
CD44-234ENST00000531873 SMAPO00193 183 aa5.92□□□□□ -1.46
CD44-234ENST00000531873 TSR1Q2NL82 804 aaKnown RBP5.92□□□□□ -1.46
CD44-234ENST00000531873 PKDCCQ504Y2 493 aa5.92□□□□□ -1.46
CD44-234ENST00000531873 CERKQ8TCT0 537 aa5.92□□□□□ -1.46
CD44-234ENST00000531873 NECTIN2Q92692 538 aa5.92□□□□□ -1.46
CD44-234ENST00000531873 TATDN2Q93075 761 aa5.92□□□□□ -1.46
CD44-234ENST00000531873 NBPF26B4DH59 902 aa5.91□□□□□ -1.46
CD44-234ENST00000531873 C3orf80F5H4A9 247 aa5.91□□□□□ -1.46
CD44-234ENST00000531873 MAP3K7O43318 606 aa5.91□□□□□ -1.46
CD44-234ENST00000531873 EMID1Q96A84 441 aaPredicted RBP5.91□□□□□ -1.46
CD44-234ENST00000531873 SUPT5HO00267 1087 aaKnown RBP5.9□□□□□ -1.46
CD44-234ENST00000531873 SLC19A1P41440 591 aa5.9□□□□□ -1.46
CD44-234ENST00000531873 DDRGK1Q96HY6 314 aa5.9□□□□□ -1.46
CD44-234ENST00000531873 NPDC1Q9NQX5 325 aaPredicted RBP5.9□□□□□ -1.46
CD44-234ENST00000531873 ZPR1O75312 459 aa5.89□□□□□ -1.47
CD44-234ENST00000531873 MS4A1P11836 297 aa5.89□□□□□ -1.47
CD44-234ENST00000531873 HDGFP51858 240 aaKnown RBP5.89□□□□□ -1.47
CD44-234ENST00000531873 ZNF598Q86UK7 904 aaKnown RBP5.89□□□□□ -1.47
CD44-234ENST00000531873 REPIN1Q9BWE0 567 aaKnown RBP5.89□□□□□ -1.47
CD44-234ENST00000531873 SPRYD7Q5W111 196 aa5.88□□□□□ -1.47
CD44-234ENST00000531873 GIGYF2Q6Y7W6 1299 aaKnown RBP5.88□□□□□ -1.47
CD44-234ENST00000531873 PNMA3Q9UL41 463 aa5.88□□□□□ -1.47
CD44-234ENST00000531873 RNF223E7ERA6 249 aa5.87□□□□□ -1.47
CD44-234ENST00000531873 TTLL12Q14166 644 aaPredicted RBP5.87□□□□□ -1.47
CD44-234ENST00000531873 RBM27Q9P2N5 1060 aaKnown RBP5.87□□□□□ -1.47
CD44-234ENST00000531873 COPS2P61201 443 aa5.86□□□□□ -1.47
CD44-234ENST00000531873 HOMEZQ8IX15 550 aa5.86□□□□□ -1.47
CD44-234ENST00000531873 PHOX2BQ99453 314 aa5.86□□□□□ -1.47
CD44-234ENST00000531873 GDF9O60383 454 aa5.85□□□□□ -1.47
CD44-234ENST00000531873 NUDT18Q6ZVK8 323 aa5.85□□□□□ -1.47
CD44-234ENST00000531873 SLF2Q8IX21 1173 aa5.85□□□□□ -1.47
CD44-234ENST00000531873 ANKLE1Q8NAG6 615 aa5.85□□□□□ -1.47
CD44-234ENST00000531873 ZMYND15Q9H091 742 aa5.85□□□□□ -1.47
CD44-234ENST00000531873 GOPCQ9HD26 462 aa5.85□□□□□ -1.47
CD44-234ENST00000531873 STK17AQ9UEE5 414 aa5.85□□□□□ -1.47
CD44-234ENST00000531873 RNF40O75150 1001 aa5.84□□□□□ -1.47
CD44-234ENST00000531873 AAASQ9NRG9 546 aa5.84□□□□□ -1.47
CD44-234ENST00000531873 TTC13Q8NBP0 860 aa5.83□□□□□ -1.48
CD44-234ENST00000531873 PRR14Q9BWN1 585 aa5.83□□□□□ -1.48
CD44-234ENST00000531873 FAM187AA6NFU0 413 aa5.82□□□□□ -1.48
CD44-234ENST00000531873 MDM2Q00987 491 aaPredicted RBP5.82□□□□□ -1.48
CD44-234ENST00000531873 SWT1Q5T5J6 900 aaKnown RBP5.82□□□□□ -1.48
CD44-234ENST00000531873 ZNF697Q5TEC3 545 aa5.82□□□□□ -1.48
CD44-234ENST00000531873 LIAT1Q6ZQX7 453 aa5.82□□□□□ -1.48
CD44-234ENST00000531873 CRIPAKQ8N1N5 446 aa5.82□□□□□ -1.48
CD44-234ENST00000531873 WIPF1O43516 503 aa5.81□□□□□ -1.48
CD44-234ENST00000531873 WFS1O76024 890 aa5.81□□□□□ -1.48
CD44-234ENST00000531873 FAM161AQ3B820 660 aa5.81□□□□□ -1.48
CD44-234ENST00000531873 RSPH6AQ9H0K4 717 aa5.81□□□□□ -1.48
CD44-234ENST00000531873 GPCPD1Q9NPB8 672 aa5.81□□□□□ -1.48
CD44-234ENST00000531873 PCDHB3Q9Y5E6 796 aa5.81□□□□□ -1.48
CD44-234ENST00000531873 ST8SIA5O15466 376 aa5.8□□□□□ -1.48
CD44-234ENST00000531873 CLCN1P35523 988 aa5.8□□□□□ -1.48
CD44-234ENST00000531873 SH3D19Q5HYK7 790 aa5.8□□□□□ -1.48
CD44-234ENST00000531873 PADI6Q6TGC4 694 aa5.8□□□□□ -1.48
CD44-234ENST00000531873 METTL3Q86U44 580 aaKnown RBP5.8□□□□□ -1.48
CD44-234ENST00000531873 NLRP7Q8WX94 980 aa5.8□□□□□ -1.48
CD44-234ENST00000531873 C1orf115Q9H7X2 142 aa5.8□□□□□ -1.48
CD44-234ENST00000531873 SLC4A3P48751 1232 aa5.79□□□□□ -1.48
CD44-234ENST00000531873 BLOC1S3Q6QNY0 202 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms