RNA–Protein interactions for RNA: ENST00000529046.5

CSDE1-212, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-212ENST00000529046 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.9□□□□□ -0.66
CSDE1-212ENST00000529046 METTL3Q86U44 580 aaKnown RBP10.9□□□□□ -0.66
CSDE1-212ENST00000529046 ITGBL1O95965 494 aaPredicted RBP10.86□□□□□ -0.67
CSDE1-212ENST00000529046 TPRNQ4KMQ1 711 aa10.86□□□□□ -0.67
CSDE1-212ENST00000529046 IFFO2Q5TF58 517 aa10.86□□□□□ -0.67
CSDE1-212ENST00000529046 MAP2K5Q13163 448 aa10.85□□□□□ -0.67
CSDE1-212ENST00000529046 PRKCSHP14314 528 aaPredicted RBP10.84□□□□□ -0.67
CSDE1-212ENST00000529046 APLP1P51693 650 aa10.84□□□□□ -0.67
CSDE1-212ENST00000529046 PRR14Q9BWN1 585 aa10.82□□□□□ -0.68
CSDE1-212ENST00000529046 KCNC4Q03721 635 aa10.81□□□□□ -0.68
CSDE1-212ENST00000529046 ZC3H15Q8WU90 426 aaKnown RBP10.8□□□□□ -0.68
CSDE1-212ENST00000529046 MINK1Q8N4C8 1332 aaPredicted RBP10.8□□□□□ -0.68
CSDE1-212ENST00000529046 IRF6O14896 467 aa10.79□□□□□ -0.68
CSDE1-212ENST00000529046 NLRP7Q8WX94 980 aa10.79□□□□□ -0.68
CSDE1-212ENST00000529046 PHOX2BQ99453 314 aa10.79□□□□□ -0.68
CSDE1-212ENST00000529046 MTRQ99707 1265 aa10.79□□□□□ -0.68
CSDE1-212ENST00000529046 DAXXQ9UER7 740 aaPredicted RBP10.79□□□□□ -0.68
CSDE1-212ENST00000529046 CFHP08603 1231 aa10.78□□□□□ -0.68
CSDE1-212ENST00000529046 KMT5BQ4FZB7 885 aa10.78□□□□□ -0.68
CSDE1-212ENST00000529046 TJAP1Q5JTD0 557 aa10.78□□□□□ -0.68
CSDE1-212ENST00000529046 SLC10A3P09131 477 aa10.77□□□□□ -0.69
CSDE1-212ENST00000529046 RSPH4AQ5TD94 716 aa10.77□□□□□ -0.69
CSDE1-212ENST00000529046 CCDC102AQ96A19 550 aa10.77□□□□□ -0.69
CSDE1-212ENST00000529046 IL21Q9HBE4 155 aa10.77□□□□□ -0.69
CSDE1-212ENST00000529046 A0A0G2JS52 829 aa10.76□□□□□ -0.69
CSDE1-212ENST00000529046 ZMYND10O75800 440 aa10.76□□□□□ -0.69
CSDE1-212ENST00000529046 PCDHB3Q9Y5E6 796 aa10.75□□□□□ -0.69
CSDE1-212ENST00000529046 COPS2P61201 443 aa10.74□□□□□ -0.69
CSDE1-212ENST00000529046 RDH13Q8NBN7 331 aa10.74□□□□□ -0.69
CSDE1-212ENST00000529046 DDX11L8A8MPP1 907 aa10.73□□□□□ -0.69
CSDE1-212ENST00000529046 ACTN4O43707 911 aaKnown RBP10.73□□□□□ -0.69
CSDE1-212ENST00000529046 BARGINQ6ZT62 677 aa10.73□□□□□ -0.69
CSDE1-212ENST00000529046 SULF1Q8IWU6 871 aa10.73□□□□□ -0.69
CSDE1-212ENST00000529046 KRI1Q8N9T8 703 aaKnown RBP10.73□□□□□ -0.69
CSDE1-212ENST00000529046 ZNF516Q92618 1163 aa10.71□□□□□ -0.69
CSDE1-212ENST00000529046 BLOC1S3Q6QNY0 202 aa10.7□□□□□ -0.7
CSDE1-212ENST00000529046 MDM2Q00987 491 aaPredicted RBP10.69□□□□□ -0.7
CSDE1-212ENST00000529046 ZPR1O75312 459 aa10.67□□□□□ -0.7
CSDE1-212ENST00000529046 RGS20O76081 388 aa10.65□□□□□ -0.7
CSDE1-212ENST00000529046 CLCN1P35523 988 aa10.65□□□□□ -0.7
CSDE1-212ENST00000529046 GPCPD1Q9NPB8 672 aa10.65□□□□□ -0.7
CSDE1-212ENST00000529046 GCGRP47871 477 aa10.64□□□□□ -0.71
CSDE1-212ENST00000529046 NKX2-3Q8TAU0 364 aa10.64□□□□□ -0.71
CSDE1-212ENST00000529046 NR1I2O75469 434 aa10.63□□□□□ -0.71
CSDE1-212ENST00000529046 CD46P15529 392 aa10.63□□□□□ -0.71
CSDE1-212ENST00000529046 PUS10Q3MIT2 529 aaKnown RBP10.63□□□□□ -0.71
CSDE1-212ENST00000529046 FUT2Q10981 343 aa10.62□□□□□ -0.71
CSDE1-212ENST00000529046 NISCHQ9Y2I1 1504 aa10.62□□□□□ -0.71
CSDE1-212ENST00000529046 TLL1O43897 1013 aa10.61□□□□□ -0.71
CSDE1-212ENST00000529046 PPP1R18Q6NYC8 613 aa10.61□□□□□ -0.71
CSDE1-212ENST00000529046 ATP6V1AP38606 617 aa10.6□□□□□ -0.71
CSDE1-212ENST00000529046 GGCXP38435 758 aa10.59□□□□□ -0.71
CSDE1-212ENST00000529046 TTLL12Q14166 644 aaPredicted RBP10.59□□□□□ -0.71
CSDE1-212ENST00000529046 AMHR2Q16671 573 aa10.59□□□□□ -0.71
CSDE1-212ENST00000529046 TMUB1Q9BVT8 246 aa10.59□□□□□ -0.71
CSDE1-212ENST00000529046 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.59□□□□□ -0.71
CSDE1-212ENST00000529046 FAM217BQ9NTX9 383 aaPredicted RBP10.59□□□□□ -0.71
CSDE1-212ENST00000529046 MORN1Q5T089 497 aa10.58□□□□□ -0.72
CSDE1-212ENST00000529046 SCUBE3Q8IX30 993 aa10.58□□□□□ -0.72
CSDE1-212ENST00000529046 SLC24A3Q9HC58 644 aa10.58□□□□□ -0.72
CSDE1-212ENST00000529046 GRIPAP1Q4V328 841 aa10.57□□□□□ -0.72
CSDE1-212ENST00000529046 AK7Q96M32 723 aa10.57□□□□□ -0.72
CSDE1-212ENST00000529046 REPIN1Q9BWE0 567 aaKnown RBP10.57□□□□□ -0.72
CSDE1-212ENST00000529046 ADH1BP00325 375 aa10.56□□□□□ -0.72
CSDE1-212ENST00000529046 TRIM66O15016 1216 aa10.55□□□□□ -0.72
CSDE1-212ENST00000529046 KDM4AO75164 1064 aa10.55□□□□□ -0.72
CSDE1-212ENST00000529046 SLC27A5Q9Y2P5 690 aa10.54□□□□□ -0.72
CSDE1-212ENST00000529046 SSTR3P32745 418 aaPredicted RBP10.53□□□□□ -0.72
CSDE1-212ENST00000529046 USP46P62068 366 aa10.53□□□□□ -0.72
CSDE1-212ENST00000529046 GIGYF2Q6Y7W6 1299 aaKnown RBP10.53□□□□□ -0.72
CSDE1-212ENST00000529046 SPSB2Q99619 263 aa10.53□□□□□ -0.72
CSDE1-212ENST00000529046 S1PR4O95977 384 aa10.52□□□□□ -0.73
CSDE1-212ENST00000529046 SLC6A16Q9GZN6 736 aa10.51□□□□□ -0.73
CSDE1-212ENST00000529046 RNF223E7ERA6 249 aa10.5□□□□□ -0.73
CSDE1-212ENST00000529046 FMNL1O95466 1100 aaPredicted RBP10.5□□□□□ -0.73
CSDE1-212ENST00000529046 NUTM1Q86Y26 1132 aa10.5□□□□□ -0.73
CSDE1-212ENST00000529046 PARP9Q8IXQ6 854 aa10.5□□□□□ -0.73
CSDE1-212ENST00000529046 THAP11Q96EK4 314 aa10.5□□□□□ -0.73
CSDE1-212ENST00000529046 HOXA2O43364 376 aa10.49□□□□□ -0.73
CSDE1-212ENST00000529046 PRKD2Q9BZL6 878 aa10.49□□□□□ -0.73
CSDE1-212ENST00000529046 SALL2Q9Y467 1007 aaPredicted RBP10.49□□□□□ -0.73
CSDE1-212ENST00000529046 Q3C1V9 767 aa10.48□□□□□ -0.73
CSDE1-212ENST00000529046 PDE4DQ08499 809 aa10.47□□□□□ -0.73
CSDE1-212ENST00000529046 RNF19BQ6ZMZ0 732 aa10.47□□□□□ -0.73
CSDE1-212ENST00000529046 IRX2Q9BZI1 471 aaPredicted RBP10.47□□□□□ -0.73
CSDE1-212ENST00000529046 PPEF1O14829 653 aaPredicted RBP10.46□□□□□ -0.73
CSDE1-212ENST00000529046 BRPF1P55201 1214 aaPredicted RBP10.46□□□□□ -0.73
CSDE1-212ENST00000529046 BRICD5Q6PL45 260 aa10.46□□□□□ -0.73
CSDE1-212ENST00000529046 ANKLE1Q8NAG6 615 aa10.46□□□□□ -0.73
CSDE1-212ENST00000529046 HLA-CQ95604 372 aa10.46□□□□□ -0.73
CSDE1-212ENST00000529046 V9GY48 417 aaPredicted RBP10.46□□□□□ -0.73
CSDE1-212ENST00000529046 BEGAINQ9BUH8 593 aa10.45□□□□□ -0.74
CSDE1-212ENST00000529046 SPIRE2Q8WWL2 714 aa10.44□□□□□ -0.74
CSDE1-212ENST00000529046 MS4A1P11836 297 aa10.43□□□□□ -0.74
CSDE1-212ENST00000529046 GUCA2AQ02747 115 aa10.43□□□□□ -0.74
CSDE1-212ENST00000529046 MSS51Q4VC12 460 aa10.43□□□□□ -0.74
CSDE1-212ENST00000529046 FAM160A2Q8N612 972 aaPredicted RBP10.43□□□□□ -0.74
CSDE1-212ENST00000529046 PRDM9Q9NQV7 894 aa10.42□□□□□ -0.74
CSDE1-212ENST00000529046 FDX1P10109 184 aa10.4□□□□□ -0.74
CSDE1-212ENST00000529046 SLC19A1P41440 591 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms