RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 VGFO15240 615 aaPredicted RBP29.56■■■□□ 2.32
VPS28-208ENST00000527797 CEBPAP49715 358 aaPredicted RBP29.56■■■□□ 2.32
VPS28-208ENST00000527797 NRXN1Q9ULB1 1477 aa29.56■■■□□ 2.32
VPS28-208ENST00000527797 PPLO60437 1756 aa29.54■■■□□ 2.32
VPS28-208ENST00000527797 NEXMIFQ5QGS0 1516 aa29.53■■■□□ 2.32
VPS28-208ENST00000527797 LAMC1P11047 1609 aa29.51■■■□□ 2.31
VPS28-208ENST00000527797 C3P01024 1663 aa29.5■■■□□ 2.31
VPS28-208ENST00000527797 A2ML1A8K2U0 1454 aa29.5■■■□□ 2.31
VPS28-208ENST00000527797 ZFYVE9O95405 1425 aa29.49■■■□□ 2.31
VPS28-208ENST00000527797 CFAP70Q5T0N1 1121 aa29.49■■■□□ 2.31
VPS28-208ENST00000527797 PIK3C2GO75747 1445 aa29.48■■■□□ 2.31
VPS28-208ENST00000527797 NUTM2DQ5VT03 806 aaPredicted RBP29.48■■■□□ 2.31
VPS28-208ENST00000527797 PLPPR3Q6T4P5 718 aa29.48■■■□□ 2.31
VPS28-208ENST00000527797 KIAA1210Q9ULL0 1709 aa29.47■■■□□ 2.31
VPS28-208ENST00000527797 NLRP1Q9C000 1473 aa29.46■■■□□ 2.31
VPS28-208ENST00000527797 ADAMTSL3P82987 1691 aa29.46■■■□□ 2.31
VPS28-208ENST00000527797 MYO5BQ9ULV0 1848 aa29.45■■■□□ 2.31
VPS28-208ENST00000527797 C14orf93Q9H972 538 aaKnown RBP29.45■■■□□ 2.3
VPS28-208ENST00000527797 ST20-MTHFSA0A0A6YYL1 179 aa29.43■■■□□ 2.3
VPS28-208ENST00000527797 RIMS1Q86UR5 1692 aaKnown RBP29.42■■■□□ 2.3
VPS28-208ENST00000527797 RIMS2Q9UQ26 1411 aa29.41■■■□□ 2.3
VPS28-208ENST00000527797 HDGFP51858 240 aaKnown RBP29.39■■■□□ 2.3
VPS28-208ENST00000527797 WASHC2AQ641Q2 1341 aa29.38■■■□□ 2.29
VPS28-208ENST00000527797 KDM5AP29375 1690 aaKnown RBP29.38■■■□□ 2.29
VPS28-208ENST00000527797 DDX10Q13206 875 aaKnown RBP29.38■■■□□ 2.29
VPS28-208ENST00000527797 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.38■■■□□ 2.29
VPS28-208ENST00000527797 SCAF11Q99590 1463 aaKnown RBP29.38■■■□□ 2.29
VPS28-208ENST00000527797 C11orf95C9JLR9 678 aaPredicted RBP29.37■■■□□ 2.29
VPS28-208ENST00000527797 SETBP1Q9Y6X0 1596 aa29.35■■■□□ 2.29
VPS28-208ENST00000527797 CCDC7Q96M83 1385 aa29.35■■■□□ 2.29
VPS28-208ENST00000527797 EIF3AQ14152 1382 aaKnown RBP29.33■■■□□ 2.29
VPS28-208ENST00000527797 TMEM2Q9UHN6 1383 aa29.33■■■□□ 2.29
VPS28-208ENST00000527797 UBR1Q8IWV7 1749 aa29.33■■■□□ 2.29
VPS28-208ENST00000527797 KIF7Q2M1P5 1343 aa29.32■■■□□ 2.28
VPS28-208ENST00000527797 IQGAP1P46940 1657 aa29.31■■■□□ 2.28
VPS28-208ENST00000527797 ADGRB1O14514 1584 aa29.28■■■□□ 2.28
VPS28-208ENST00000527797 TMEM132EQ6IEE7 984 aa29.27■■■□□ 2.28
VPS28-208ENST00000527797 MYO3AQ8NEV4 1616 aa29.27■■■□□ 2.28
VPS28-208ENST00000527797 THEMISQ8N1K5 641 aaPredicted RBP29.27■■■□□ 2.28
VPS28-208ENST00000527797 TESK2Q96S53 571 aa29.27■■■□□ 2.28
VPS28-208ENST00000527797 SENP3Q9H4L4 574 aaPredicted RBP29.25■■■□□ 2.27
VPS28-208ENST00000527797 PTPRMP28827 1452 aa29.23■■■□□ 2.27
VPS28-208ENST00000527797 EID1Q9Y6B2 187 aa29.22■■■□□ 2.27
VPS28-208ENST00000527797 ALKQ9UM73 1620 aa29.22■■■□□ 2.27
VPS28-208ENST00000527797 POLR1AO95602 1720 aaPredicted RBP29.22■■■□□ 2.27
VPS28-208ENST00000527797 TMF1P82094 1093 aa29.21■■■□□ 2.27
VPS28-208ENST00000527797 TRAK1Q9UPV9 953 aa29.21■■■□□ 2.27
VPS28-208ENST00000527797 POLR3GLQ9BT43 218 aa29.2■■■□□ 2.27
VPS28-208ENST00000527797 TXNDC2Q86VQ3 553 aa29.2■■■□□ 2.26
VPS28-208ENST00000527797 SLIT1O75093 1534 aa29.19■■■□□ 2.26
VPS28-208ENST00000527797 SLC24A1O60721 1099 aa29.19■■■□□ 2.26
VPS28-208ENST00000527797 MIER1Q8N108 512 aa29.19■■■□□ 2.26
VPS28-208ENST00000527797 CEP170BQ9Y4F5 1589 aaPredicted RBP29.19■■■□□ 2.26
VPS28-208ENST00000527797 ARHGAP23Q9P227 1491 aa29.18■■■□□ 2.26
VPS28-208ENST00000527797 LTKP29376 864 aa29.17■■■□□ 2.26
VPS28-208ENST00000527797 BCANQ96GW7 911 aa29.16■■■□□ 2.26
VPS28-208ENST00000527797 ASXL1Q8IXJ9 1541 aa29.15■■■□□ 2.26
VPS28-208ENST00000527797 CENPJQ9HC77 1338 aaPredicted RBP29.15■■■□□ 2.26
VPS28-208ENST00000527797 PLEKHG1Q9ULL1 1385 aa29.15■■■□□ 2.26
VPS28-208ENST00000527797 DISP3Q9P2K9 1392 aa29.14■■■□□ 2.26
VPS28-208ENST00000527797 STK26Q9P289 416 aa29.12■■■□□ 2.25
VPS28-208ENST00000527797 YTHDC2Q9H6S0 1430 aaKnown RBP29.12■■■□□ 2.25
VPS28-208ENST00000527797 CDCA8Q53HL2 280 aa29.12■■■□□ 2.25
VPS28-208ENST00000527797 SBNO2Q9Y2G9 1366 aa29.1■■■□□ 2.25
VPS28-208ENST00000527797 NRXN3Q9Y4C0 1643 aa29.1■■■□□ 2.25
VPS28-208ENST00000527797 SETD1BQ9UPS6 1966 aaKnown RBP29.1■■■□□ 2.25
VPS28-208ENST00000527797 ZNF142P52746 1687 aaPredicted RBP29.09■■■□□ 2.25
VPS28-208ENST00000527797 LRPPRCP42704 1394 aaKnown RBP29.07■■■□□ 2.24
VPS28-208ENST00000527797 METP08581 1390 aa29.05■■■□□ 2.24
VPS28-208ENST00000527797 ADAMTS13Q76LX8 1427 aa29.05■■■□□ 2.24
VPS28-208ENST00000527797 SETD1AO15047 1707 aaKnown RBP29.05■■■□□ 2.24
VPS28-208ENST00000527797 ANP32CO43423 234 aa29.05■■■□□ 2.24
VPS28-208ENST00000527797 ANKLE2Q86XL3 938 aa29.03■■■□□ 2.24
VPS28-208ENST00000527797 ARHGEF28Q8N1W1 1705 aaKnown RBP29.03■■■□□ 2.24
VPS28-208ENST00000527797 ABCC11Q96J66 1382 aa29.02■■■□□ 2.24
VPS28-208ENST00000527797 POGKQ9P215 609 aa29.01■■■□□ 2.23
VPS28-208ENST00000527797 KDM4FA0A1W2PPD8 638 aa29■■■□□ 2.23
VPS28-208ENST00000527797 PRAM1Q96QH2 718 aa29■■■□□ 2.23
VPS28-208ENST00000527797 DLC1Q96QB1 1528 aa28.99■■■□□ 2.23
VPS28-208ENST00000527797 MED14O60244 1454 aa28.99■■■□□ 2.23
VPS28-208ENST00000527797 TBX22Q9Y458 520 aa28.99■■■□□ 2.23
VPS28-208ENST00000527797 QRICH2Q9H0J4 1663 aa28.99■■■□□ 2.23
VPS28-208ENST00000527797 SLC26A8Q96RN1 970 aa28.98■■■□□ 2.23
VPS28-208ENST00000527797 SAFB2Q14151 953 aaKnown RBP eCLIP28.96■■■□□ 2.23
VPS28-208ENST00000527797 SIRT1Q96EB6 747 aa28.95■■■□□ 2.23
VPS28-208ENST00000527797 EVC2Q86UK5 1308 aa28.94■■■□□ 2.22
VPS28-208ENST00000527797 DIP2AQ14689 1571 aa28.93■■■□□ 2.22
VPS28-208ENST00000527797 TECPR2O15040 1411 aa28.92■■■□□ 2.22
VPS28-208ENST00000527797 PUS7Q96PZ0 661 aaKnown RBP28.91■■■□□ 2.22
VPS28-208ENST00000527797 WAPLQ7Z5K2 1190 aa28.89■■■□□ 2.22
VPS28-208ENST00000527797 FAM135BQ49AJ0 1406 aa28.89■■■□□ 2.22
VPS28-208ENST00000527797 PANK3Q9H999 370 aa28.88■■■□□ 2.21
VPS28-208ENST00000527797 MINK1Q8N4C8 1332 aaPredicted RBP28.88■■■□□ 2.21
VPS28-208ENST00000527797 KNDC1Q76NI1 1749 aa28.87■■■□□ 2.21
VPS28-208ENST00000527797 PLEKHH1Q9ULM0 1364 aa28.86■■■□□ 2.21
VPS28-208ENST00000527797 CPS1P31327 1500 aa28.86■■■□□ 2.21
VPS28-208ENST00000527797 TULP4Q9NRJ4 1543 aa28.85■■■□□ 2.21
VPS28-208ENST00000527797 PTPRUQ92729 1446 aa28.85■■■□□ 2.21
VPS28-208ENST00000527797 AMOTL2Q9Y2J4 779 aa28.84■■■□□ 2.21
VPS28-208ENST00000527797 PIK3R4Q99570 1358 aa28.84■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms